mRNA_H-elongata_contig68462.14480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68462.14480.1
Unique NamemRNA_H-elongata_contig68462.14480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.910e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL+QI  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct: 1065 ALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1142
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.950e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL+QI  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct: 1618 ALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1695
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BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.930e-14
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   13 IAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            I  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct:  194 ILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 267
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.340e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:    4 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 81
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.610e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   31 ALVRIMSYLNETKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 108
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K588_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K588_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.160e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T EAEY+A
Sbjct:   73 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQPTTEAEYIA 150
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   31 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 108
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.560e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   99 ALVRILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 176
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:  192 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 269
[Close]
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.030e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 234
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:  190 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE4.910e-1652.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.950e-1652.56Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.930e-1451.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCR8_9PHAE5.340e-1446.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE8.610e-1446.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K588_9PHAE1.160e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K887_9PHAE1.330e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV3_9PHAE1.560e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB4_9PHAE2.100e-1346.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU54_9PHAE4.030e-1346.15Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68462contigH-elongata_contig68462:90..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog3750.XP_008360651.1
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
EggNOG free text desc.fructose-bisphosphate aldolase
EggNOG OGs37KBJ@33090,3GDDU@35493,4JE64@91835,COG2801@1,COG3588@1,KOG0017@2759,KOG1557@2759
EC4.1.2.13
COG Functional cat.G
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.6385984-CDS-H-elongata_contig68462:89..3261622931078.6385984-CDS-H-elongata_contig68462:89..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68462 90..326 +
1691679689.2639213-CDS-H-elongata_contig68462:89..3261691679689.2639213-CDS-H-elongata_contig68462:89..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68462 90..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68462.14480.1prot_H-elongata_contig68462.14480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68462 90..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68462.14480.1

>prot_H-elongata_contig68462.14480.1 ID=prot_H-elongata_contig68462.14480.1|Name=mRNA_H-elongata_contig68462.14480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAV
MLGNTAIDWKSSTQKCVMTATCEAEYVAL
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mRNA from alignment at H-elongata_contig68462:90..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68462.14480.1 ID=mRNA_H-elongata_contig68462.14480.1|Name=mRNA_H-elongata_contig68462.14480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig68462:90..326+ (Himanthalia elongata Himel1 dioecious)
GCGCTCCTGCAGATCGCTGTGTACGTGAATGCCACAAAAGAGATAGGTCT
GAGGTTTGTGCGAGGTTCTGGCCTGAAGCTTTCTGTTTACGCTGATGCTG
ATTACGCGGCGGCATCTAACGATCGAAGGTCCGTGTCTGGTGTTGCAGTG
ATGTTGGGAAACACAGCCATTGACTGGAAGAGTTCTACGCAGAAATGCGT
GATGACTGCCACGTGTGAAGCCGAATACGTTGCACTG
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Coding sequence (CDS) from alignment at H-elongata_contig68462:90..326+

>mRNA_H-elongata_contig68462.14480.1 ID=mRNA_H-elongata_contig68462.14480.1|Name=mRNA_H-elongata_contig68462.14480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig68462:90..326+ (Himanthalia elongata Himel1 dioecious)
GCGCTCCTGCAGATCGCTGTGTACGTGAATGCCACAAAAGAGATAGGTCT
GAGGTTTGTGCGAGGTTCTGGCCTGAAGCTTTCTGTTTACGCTGATGCTG
ATTACGCGGCGGCATCTAACGATCGAAGGTCCGTGTCTGGTGTTGCAGTG
ATGTTGGGAAACACAGCCATTGACTGGAAGAGTTCTACGCAGAAATGCGT
GATGACTGCCACGTGTGAAGCCGAATACGTTGCACTGGCGCTCCTGCAGA
TCGCTGTGTACGTGAATGCCACAAAAGAGATAGGTCTGAGGTTTGTGCGA
GGTTCTGGCCTGAAGCTTTCTGTTTACGCTGATGCTGATTACGCGGCGGC
ATCTAACGATCGAAGGTCCGTGTCTGGTGTTGCAGTGATGTTGGGAAACA
CAGCCATTGACTGGAAGAGTTCTACGCAGAAATGCGTGATGACTGCCACG
TGTGAAGCCGAATACGTTGCACTG
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