prot_H-elongata_contig68462.14480.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68462.14480.1
Unique Nameprot_H-elongata_contig68462.14480.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.910e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL+QI  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct: 1065 ALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1142          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.950e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL+QI  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct: 1618 ALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1695          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.930e-14
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0
Query:    5 IAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            I  Y+NAT ++G+ +VRGSGL L VY DA YA     RRSV+G+AV +G T +   S TQ+ V  +T EAEY+A
Sbjct:  194 ILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 267          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.340e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:    4 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 81          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.610e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   31 ALVRIMSYLNETKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 108          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K588_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K588_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.160e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ      T EAEY+A
Sbjct:   73 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQPTTEAEYIA 150          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   31 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 108          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.560e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:   99 ALVRILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 176          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:  192 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 269          
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.030e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    1 ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIDWKSSTQKCVMTATCEAEYVA 78
            AL++I  Y+N TK++G+ +VRGSGL L V+ D+ YA ++ DRRS +G+AV +G T +   + TQ     +T EAEY+A
Sbjct:  190 ALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIA 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68462.14480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE4.910e-1652.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.950e-1652.56Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.930e-1451.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCR8_9PHAE5.340e-1446.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE8.610e-1446.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K588_9PHAE1.160e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K887_9PHAE1.330e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV3_9PHAE1.560e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB4_9PHAE2.100e-1346.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU54_9PHAE4.030e-1346.15Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..78
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 4..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68462contigH-elongata_contig68462:90..326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68462.14480.1mRNA_H-elongata_contig68462.14480.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68462 90..326 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68462.14480.1 ID=prot_H-elongata_contig68462.14480.1|Name=mRNA_H-elongata_contig68462.14480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ALLQIAVYVNATKEIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAV
MLGNTAIDWKSSTQKCVMTATCEAEYVAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like