mRNA_H-elongata_contig68408.14474.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI) HSP 1 Score: 126 bits (316), Expect = 1.050e-30 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
G W +V G ++G+R V+K K+D+DG +YK RLVAQ F Q +GI ++E+ +P ++R+V+S+ ALG +D+ YL + EE+ ++ P Y D +V LLR+A+YGL AG W T +L + GF + Q++PC+F R G V I+ VYVDD+ +A+
Sbjct: 55 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGRPV-ILAVYVDDIVIAA 227
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI) HSP 1 Score: 126 bits (317), Expect = 1.720e-30 Identity = 67/172 (38.95%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 13 WQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
W++V PKG+ V+G+R V+K K+D+DGR +YK RLVAQ F Q GI + ++ +P ++IR+++S+ AL +D+ YL ++EE+ ++ P Y D +V LLR+A+YGL AG W T +L + G+ + Q++PC+F R VI+ VYVDD+ +A+
Sbjct: 725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVIAA 895
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI) HSP 1 Score: 125 bits (315), Expect = 3.190e-30 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
G W +V G ++G+R V+K K+D+DG +YK RLVAQ F Q +GI ++E+ +P ++R+V+S+ ALG +D+ YL + EE+ ++ P Y D +V LLR+A+YGL AG W T +L + GF + Q++PC+F R G V I+ VYVDD+ +A+
Sbjct: 724 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGGPV-ILAVYVDDIVIAA 896
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177U2V9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U2V9_9BASI) HSP 1 Score: 125 bits (314), Expect = 3.920e-30 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
G W +V G ++G+R V+K K+D+DG +YK RLVAQ F Q +GI ++E+ +P ++R+V+S+ ALG +D+ YL + EE+ ++ P Y D +V LLR+A+YGL AG W T +L + GF + Q++PC+F R G V I+ VYVDD+ +A+
Sbjct: 253 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLRQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGTGGPV-ILAVYVDDIVIAA 425
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 124 bits (311), Expect = 4.020e-30 Identity = 67/174 (38.51%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRD-SRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVA 525
G WQ+ P G+ +G + +FKRK+D+DG + +YK RLVAQ F Q G Y+E +P Q + R++L++ G + DV YL ++EE I + P Y D +R V L+K++YGL AG +W+K F L+ FQ+S+ DPC++ R +G +V+YVDD+ +A
Sbjct: 24 GTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVR-RNGKGYTYLVIYVDDMVIA 196
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177TMV6_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TMV6_9BASI) HSP 1 Score: 125 bits (313), Expect = 5.910e-30 Identity = 66/174 (37.93%), Postives = 104/174 (59.77%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
G W +V PKG+ ++G+R VFK K+D++G +YK RLVAQ F Q +GI + E+ +P +IR+ +S+ A G +D+ YL + EE+ ++ P Y D +V LLR+A+YGL AG W T +L + +++ Q++PC+F R V I+ VYVDD+ +A+
Sbjct: 724 GTWTLVDLPKGREMVGSRWVFKLKLDREGCAARYKARLVAQGFTQREGIDFSETFAPVARLGTIRITISLALAFGLNLHSIDIKTAYLNGKLSEEVYIQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLRAKLLSAAYKQVQSEPCLFVRFGKDGPV-ILAVYVDDIVIAA 896
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 121 bits (304), Expect = 9.670e-29 Identity = 61/170 (35.88%), Postives = 101/170 (59.41%), Query Frame = 1
Query: 7 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDL 516
G W++ + + ++G+R VF +K D+ G++ +YK RLVAQ F Q+ G+ Y ++ SP ++R +++ WE RQ+D+ YL ++EEEI +E P+ + D +V L+ +YGL AG +W+K +L GF R+ ADPCV+ G + I+ V+VDD+
Sbjct: 885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDI 1053
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.220e-28 Identity = 63/170 (37.06%), Postives = 101/170 (59.41%), Query Frame = 1
Query: 19 VVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
V G P+G+ + ++ F K +K+G+I+ +K RLVA+ F Q+ + Y SSSP P+ ASI+++L++ G DV Y A ++EE+ ++LP D ++ +A+YGL +G W L GF++ +ADPCVFR+++ VV+IIV+YVDD+ VA
Sbjct: 326 VDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG 495
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A5S6QJY9_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJY9_TRIMR) HSP 1 Score: 120 bits (302), Expect = 1.680e-28 Identity = 66/171 (38.60%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 4 RGVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDL 516
R W V P+ +G++ VF+RK+D G +E+YK RLVA+ F Q GI Y E+++P + IR +LS+ GW R +DV YL + EEI ++LP+ Y + +V L + +YGL +G +W++T + LE GFQR + CV+ +IIVVYVDD+
Sbjct: 343 RQTWVEVDLPEKAPSIGSKWVFRRKLDSTGSVERYKARLVARGFGQKAGIDYSETNAPVVSLTVIRFLLSLSMQFGWHVRHVDVKSAYLYGKLAEEIYMKLPEGYEHTVGKVARLLRPIYGLKQSGRVWNETLTVFLEKLGFQRQWSSSCVYVSSNQ----IIIVVYVDDI 509
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.750e-28 Identity = 63/170 (37.06%), Postives = 101/170 (59.41%), Query Frame = 1
Query: 19 VVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 528
V G P+G+ + ++ F K +K+G+I+ +K RLVA+ F Q+ + Y SSSP P+ ASI+++L++ G DV Y A ++EE+ ++LP D ++ +A+YGL +G W L GF++ +ADPCVFR+++ VV+IIV+YVDD+ VA
Sbjct: 572 VDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG 741 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68408.14474.1 >prot_H-elongata_contig68408.14474.1 ID=prot_H-elongata_contig68408.14474.1|Name=mRNA_H-elongata_contig68408.14474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp ARGVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGback to top mRNA from alignment at H-elongata_contig68408:2763..3290+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68408.14474.1 ID=mRNA_H-elongata_contig68408.14474.1|Name=mRNA_H-elongata_contig68408.14474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig68408:2763..3290+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68408:2763..3290+ >mRNA_H-elongata_contig68408.14474.1 ID=mRNA_H-elongata_contig68408.14474.1|Name=mRNA_H-elongata_contig68408.14474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig68408:2763..3290+ (Himanthalia elongata Himel1 dioecious)back to top |