prot_H-elongata_contig68408.14474.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68408.14474.1
Unique Nameprot_H-elongata_contig68408.14474.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length176
Homology
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI)

HSP 1 Score: 126 bits (316), Expect = 1.050e-30
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            G W +V    G  ++G+R V+K K+D+DG   +YK RLVAQ F Q +GI ++E+ +P     ++R+V+S+  ALG     +D+   YL   + EE+ ++ P  Y D   +V LLR+A+YGL  AG  W  T   +L + GF + Q++PC+F R   G  V I+ VYVDD+ +A+
Sbjct:   55 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGRPV-ILAVYVDDIVIAA 227          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 126 bits (317), Expect = 1.720e-30
Identity = 67/172 (38.95%), Postives = 107/172 (62.21%), Query Frame = 0
Query:    5 WQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            W++V  PKG+ V+G+R V+K K+D+DGR  +YK RLVAQ F Q  GI + ++ +P    ++IR+++S+  AL      +D+   YL   ++EE+ ++ P  Y D   +V LLR+A+YGL  AG  W  T   +L + G+ + Q++PC+F R       VI+ VYVDD+ +A+
Sbjct:  725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVIAA 895          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI)

HSP 1 Score: 125 bits (315), Expect = 3.190e-30
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            G W +V    G  ++G+R V+K K+D+DG   +YK RLVAQ F Q +GI ++E+ +P     ++R+V+S+  ALG     +D+   YL   + EE+ ++ P  Y D   +V LLR+A+YGL  AG  W  T   +L + GF + Q++PC+F R   G  V I+ VYVDD+ +A+
Sbjct:  724 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGGPV-ILAVYVDDIVIAA 896          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177U2V9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U2V9_9BASI)

HSP 1 Score: 125 bits (314), Expect = 3.920e-30
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            G W +V    G  ++G+R V+K K+D+DG   +YK RLVAQ F Q +GI ++E+ +P     ++R+V+S+  ALG     +D+   YL   + EE+ ++ P  Y D   +V LLR+A+YGL  AG  W  T   +L + GF + Q++PC+F R   G  V I+ VYVDD+ +A+
Sbjct:  253 GTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLRQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGTGGPV-ILAVYVDDIVIAA 425          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 124 bits (311), Expect = 4.020e-30
Identity = 67/174 (38.51%), Postives = 103/174 (59.20%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRD-SRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVA 175
            G WQ+   P G+  +G + +FKRK+D+DG + +YK RLVAQ F Q  G  Y+E  +P   Q + R++L++    G   +  DV   YL  ++EE I +  P  Y D +R  V  L+K++YGL  AG +W+K F   L+   FQ+S+ DPC++ R  +G     +V+YVDD+ +A
Sbjct:   24 GTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVR-RNGKGYTYLVIYVDDMVIA 196          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A177TMV6_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TMV6_9BASI)

HSP 1 Score: 125 bits (313), Expect = 5.910e-30
Identity = 66/174 (37.93%), Postives = 104/174 (59.77%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            G W +V  PKG+ ++G+R VFK K+D++G   +YK RLVAQ F Q +GI + E+ +P     +IR+ +S+  A G     +D+   YL   + EE+ ++ P  Y D   +V LLR+A+YGL  AG  W  T   +L +  +++ Q++PC+F R      V I+ VYVDD+ +A+
Sbjct:  724 GTWTLVDLPKGREMVGSRWVFKLKLDREGCAARYKARLVAQGFTQREGIDFSETFAPVARLGTIRITISLALAFGLNLHSIDIKTAYLNGKLSEEVYIQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLRAKLLSAAYKQVQSEPCLFVRFGKDGPV-ILAVYVDDIVIAA 896          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: Q2QPL7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QPL7_ORYSJ)

HSP 1 Score: 119 bits (299), Expect = 1.200e-29
Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 0
Query:    5 WQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRK--QVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            W +V   +G+ ++  + V+K K   DG I++YK RLVA+ F+Q  GI YEE+ SP    A+IR++LS+  + GW  RQLDV   +L   +EE++ +  P  Y D  K   V  L KA+YGL  A   W     ++L+  GFQ S+AD  +F     GT+ + +++YVDD+ VAS
Sbjct:   14 WHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGIDYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFY-KKGTISIFVLIYVDDIIVAS 186          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 121 bits (304), Expect = 9.670e-29
Identity = 61/170 (35.88%), Postives = 101/170 (59.41%), Query Frame = 0
Query:    3 GVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDL 172
            G W++    + + ++G+R VF +K D+ G++ +YK RLVAQ F Q+ G+ Y ++ SP     ++R  +++     WE RQ+D+   YL  ++EEEI +E P+ + D   +V  L+  +YGL  AG +W+K    +L   GF R+ ADPCV+     G +  I+ V+VDD+
Sbjct:  885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDI 1053          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.220e-28
Identity = 63/170 (37.06%), Postives = 101/170 (59.41%), Query Frame = 0
Query:    7 VVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            V G P+G+  + ++  F  K +K+G+I+ +K RLVA+ F Q+  + Y  SSSP P+ ASI+++L++    G      DV   Y  A ++EE+ ++LP    D   ++    +A+YGL  +G  W       L   GF++ +ADPCVFR+++   VV+IIV+YVDD+ VA 
Sbjct:  326 VDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG 495          
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Match: A0A141NB86_ORYMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Oryza TaxID=4527 RepID=A0A141NB86_ORYMI)

HSP 1 Score: 119 bits (299), Expect = 1.600e-28
Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 0
Query:    5 WQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKGIHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINVELPKAYRDSRK--QVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADPCVFRRILHGTVVVIIVVYVDDLPVAS 176
            W +V   +G+ ++  + V+K K   DG I++YK RLVA+ F+Q  GI YEE+ SP    A+IR++LS+  + GW  RQLDV   +L   +EE++ +  P  Y D  K   V  L KA+YGL  A   W     ++L+  GFQ S+AD  +F     GT+ + +++YVDD+ VAS
Sbjct:   14 WHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGIDYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFY-KKGTISIFVLIYVDDIIVAS 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68408.14474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177U0B1_9BASI1.050e-3039.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177TV96_9BASI1.720e-3038.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A177VSQ5_9BASI3.190e-3039.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U2V9_9BASI3.920e-3039.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL4.020e-3038.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177TMV6_9BASI5.910e-3037.93Integrase catalytic domain-containing protein n=1 ... [more]
Q2QPL7_ORYSJ1.200e-2939.66Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A0C3AKI0_9AGAM9.670e-2935.88Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A6H5JC10_9PHAE1.220e-2837.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A141NB86_ORYMI1.600e-2839.66Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..175
e-value: 1.5E-36
score: 126.3
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 5..171
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68408contigH-elongata_contig68408:2763..3290 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68408.14474.1mRNA_H-elongata_contig68408.14474.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68408 2763..3290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68408.14474.1 ID=prot_H-elongata_contig68408.14474.1|Name=mRNA_H-elongata_contig68408.14474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
ARGVWQVVGRPKGKTVLGTRIVFKRKIDKDGRIEKYKCRLVAQSFRQVKG
IHYEESSSPTPTQASIRMVLSMIKALGWEARQLDVDMVYLEADVEEEINV
ELPKAYRDSRKQVGLLRKAMYGLVHAGLLWSKTFWIELEAKGFQRSQADP
CVFRRILHGTVVVIIVVYVDDLPVAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like