mRNA_H-elongata_contig6839.14466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6839.14466.1
Unique NamemRNA_H-elongata_contig6839.14466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A6H5KL96_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL96_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.750e-84
Identity = 128/158 (81.01%), Postives = 141/158 (89.24%), Query Frame = 1
Query:    1 SLQGAISSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKALQA 474
            S Q   S+ LRMVSVGQA PDFKL NQ+GK V+LSSFKNKK+VVVFFYPKDSTPGCTKEAQTFQ+DL +FKK GAEVIGISSDADHT FVKEN LSMTLLSDIGG+VRK WKVK A FGTIDGRVTYV+DK+G+VT +YDNLLDG AHSKEALKAL++
Sbjct:   35 SAQRVSSTALRMVSVGQAAPDFKLNNQNGKPVTLSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGIVTSMYDNLLDGAAHSKEALKALES 192          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: D8LJF6_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF6_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 3.670e-83
Identity = 125/147 (85.03%), Postives = 135/147 (91.84%), Query Frame = 1
Query:   34 MVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKALQA 474
            MVSVGQA PDFKL NQ+GK V+LSSFKNKK+VVVFFYPKDSTPGCTKEAQTFQ+DL +FKK GAEVIGISSDADHT FVKEN LSMTLLSDIGG+VRK WKVK A FGTIDGRVTYV+DK+GVVT +YDNLLDG AHSKEALKAL+A
Sbjct:    1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 147          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A0G4FWI1_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWI1_VITBC)

HSP 1 Score: 200 bits (509), Expect = 7.740e-63
Identity = 99/147 (67.35%), Postives = 112/147 (76.19%), Query Frame = 1
Query:   28 LRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKAL 468
            L MV VG+  PDF L++QSGK V LSSFKNKK VVVFFYP D TPGCTK+AQ F   LD FKKLGAEVIG+SSDADH+ F+   GL MTLLSDIGGEVRK W+V  A FG + GRVTYVI K G+V K+YDNLLD  +H  +A  AL
Sbjct:   48 LSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSESHIPQARAAL 194          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A7S2V5C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.470e-60
Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 1
Query:   19 SSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHS---KEALK 462
            SSTL MVS GQA P F L++QSG T++L+S+K KK VV+FFYPKD TPGCTKEAQ F A+LD+F+K+GAEVIGISSDADH+AFV++ GL M LLSDI G VRK +KV  + FG +DGRVTYVI K G+V KIYDN  +  +H    KEALK
Sbjct:   44 SSTLSMVSEGQAAPSFSLKDQSGSTITLASYKGKKDVVLFFYPKDDTPGCTKEAQAFNANLDEFQKMGAEVIGISSDADHSAFVEKYGLKMKLLSDINGAVRKQFKVPSSLFGALDGRVTYVIGKDGIVKKIYDNQFNPESHIDVVKEALK 194          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A0G4GTF6_9ALVE (Thioredoxin domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GTF6_9ALVE)

HSP 1 Score: 174 bits (441), Expect = 1.160e-52
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = 1
Query:   22 STLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKAL 468
            S L MV+VG   PDFKL +Q+G++VSLSSFK KK VV+FFYPKD TPGCT E   F    D+F KL A+++G+SSD DHT FV + G  +TLLSD+GG VR+ +KV KA  G +DGRVTY+I K G V  +Y+N+++   H +EA K L
Sbjct:   33 SHLSMVNVGDVAPDFKLTDQNGQSVSLSSFKGKKDVVLFFYPKDDTPGCTAECDLFDKAADEFSKLNAKILGVSSDEDHTEFVSKYGFQLTLLSDVGGNVRQTYKVPKAMMGFLDGRVTYIIGKDGKVKSVYENMMEPAKHVEEARKVL 181          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A835Z8Y3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 8.220e-51
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   19 SSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAH---SKEAL 459
            +++LRMV  G + PDF L++ +GK+VSLSSFK KK VV+FF+PK  TPGCTKEA  F A+L  F K G E+IGISSDA+  AF  +  L MTLL+D GG VRK + V ++ FG +DGRVTYVI K G+V K++DNL+D  +H   SK+AL
Sbjct:   24 AASLRMVKAGDSAPDFTLKDSAGKSVSLSSFKGKKNVVLFFFPKSDTPGCTKEACAFNAELPVFAKAGTEIIGISSDAEQAAFKAKYNLGMTLLADAGGAVRKLYNVPRSMFGALDGRVTYVIGKDGIVKKVHDNLIDAESHVSISKQAL 173          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: W7TJV0_9STRA (Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.930e-50
Identity = 85/153 (55.56%), Postives = 105/153 (68.63%), Query Frame = 1
Query:   10 GAISSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKAL 468
            G     + M+ VG A PDF L++Q+ K V LS+FK KK+VV+FFYPKD TPGCTKEA+ F A L  FKK GAEV GISSD DHTAFV + GL M LLSD+GG  RK ++V  + FG +DGRVTYVI K   +  IYDN     +H +++L  L
Sbjct:   27 GRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: A0A835QDD0_VANPL (Thioredoxin-dependent peroxiredoxin n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QDD0_VANPL)

HSP 1 Score: 155 bits (392), Expect = 1.250e-45
Identity = 84/153 (54.90%), Postives = 103/153 (67.32%), Query Frame = 1
Query:   22 STLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSD--ADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKALQA 474
            STL+ VS G  PP+F L++Q GKTVSLS FK K  +VV+FYP D TPGCTKEA  F+   ++FKK GAEV+GIS D  + H AF K+  L  TLLSD G +VRK+W V    FGT+ GR TYVIDK GV+  +Y+N      H  E LK LQ+
Sbjct:    3 STLK-VSKGDVPPNFNLKDQDGKTVSLSKFKGK-PIVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDDGNKVRKEWGVPSDLFGTLPGRQTYVIDKKGVIQLVYNNQFQPEKHVDETLKLLQS 153          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: M2X6X8_GALSU (Peroxiredoxin Q/BCP n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X6X8_GALSU)

HSP 1 Score: 157 bits (396), Expect = 1.400e-45
Identity = 81/152 (53.29%), Postives = 106/152 (69.74%), Query Frame = 1
Query:   19 SSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKALQA 474
            +S L MV  G+A PDF L++Q G  V LS FK KK V+++FYPKD TPGCTK+A  F+  ++ F +LGAEVIG+SSD DH  FV++  L   LLSD G +VRK ++V  + FG + GRVTYVID+ G+V KIY+N      H +EA KAL+A
Sbjct:   51 TSFLNMVKEGEAAPDFSLKDQDGNNVRLSDFKGKKAVILYFYPKDDTPGCTKQALCFREAIEDFAQLGAEVIGVSSDQDHRKFVEKYKLPFKLLSDEGSKVRKLYEVP-STFGILPGRVTYVIDRQGIVKKIYNNQFRSELHVEEAKKALKA 201          
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Match: UPI001CFC0FD1 (peroxiredoxin Q, chloroplastic-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFC0FD1)

HSP 1 Score: 155 bits (391), Expect = 1.040e-44
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 1
Query:   19 SSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPKDSTPGCTKEAQTFQADLDQFKKLGAEVIGISSD--ADHTAFVKENGLSMTLLSDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSKEALKALQA 474
            +S +  V+ GQ PP+F L++Q GK VSLS FK K  VVV+FYP D TPGCTK+A  F+   ++FKK GAEVIGIS D  + H AF K+  L  TLLSD G +VRKDW V    FGT+ GR TYV+DK+GVV  IY+N      H  E LK LQ+
Sbjct:   60 TSIVAKVTKGQVPPEFTLKDQDGKNVSLSRFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDTSSHKAFAKKYRLPFTLLSDEGNKVRKDWGVPADLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQS 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6839.14466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL96_9PHAE1.750e-8481.01Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D8LJF6_ECTSI3.670e-8385.03Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A0G4FWI1_VITBC7.740e-6367.35Thioredoxin domain-containing protein n=2 Tax=Vitr... [more]
A0A7S2V5C5_9STRA1.470e-6065.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4GTF6_9ALVE1.160e-5255.70Thioredoxin domain-containing protein n=1 Tax=Chro... [more]
A0A835Z8Y3_9STRA8.220e-5156.67Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
W7TJV0_9STRA1.930e-5055.56Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=4250... [more]
A0A835QDD0_VANPL1.250e-4554.90Thioredoxin-dependent peroxiredoxin n=1 Tax=Vanill... [more]
M2X6X8_GALSU1.400e-4553.29Peroxiredoxin Q/BCP n=1 Tax=Galdieria sulphuraria ... [more]
UPI001CFC0FD11.040e-4454.55peroxiredoxin Q, chloroplastic-like n=1 Tax=Mangif... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6839contigH-elongata_contig6839:1292..3865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue2e-64
Seed eggNOG ortholog2880.D8LJF6
KEGG koko:K03564
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG1225@1,KOG0855@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Ec32 orthologEc-06_010010.1
Exons3
Model size477
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6839.14466.1prot_H-elongata_contig6839.14466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6839 1292..3865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.3309197-CDS-H-elongata_contig6839:1291..14501622931077.3309197-CDS-H-elongata_contig6839:1291..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 1292..1450 -
1691679688.5636892-CDS-H-elongata_contig6839:1291..14501691679688.5636892-CDS-H-elongata_contig6839:1291..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 1292..1450 -
1622931077.345667-CDS-H-elongata_contig6839:2071..22571622931077.345667-CDS-H-elongata_contig6839:2071..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 2072..2257 -
1691679688.585603-CDS-H-elongata_contig6839:2071..22571691679688.585603-CDS-H-elongata_contig6839:2071..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 2072..2257 -
1622931077.3602943-CDS-H-elongata_contig6839:3733..38651622931077.3602943-CDS-H-elongata_contig6839:3733..3865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 3734..3865 -
1691679688.6022959-CDS-H-elongata_contig6839:3733..38651691679688.6022959-CDS-H-elongata_contig6839:3733..3865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6839 3734..3865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6839.14466.1

>prot_H-elongata_contig6839.14466.1 ID=prot_H-elongata_contig6839.14466.1|Name=mRNA_H-elongata_contig6839.14466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
SLQGAISSTLRMVSVGQAPPDFKLQNQSGKTVSLSSFKNKKQVVVFFYPK
DSTPGCTKEAQTFQADLDQFKKLGAEVIGISSDADHTAFVKENGLSMTLL
SDIGGEVRKDWKVKKAAFGTIDGRVTYVIDKSGVVTKIYDNLLDGGAHSK
EALKALQA*
back to top

mRNA from alignment at H-elongata_contig6839:1292..3865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6839.14466.1 ID=mRNA_H-elongata_contig6839.14466.1|Name=mRNA_H-elongata_contig6839.14466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2574bp|location=Sequence derived from alignment at H-elongata_contig6839:1292..3865- (Himanthalia elongata Himel1 dioecious)
TCTCTCCAGGGAGCCATATCGTCTACGTTGCGCATGGTGTCAGTGGGCCA GGCCCCTCCCGACTTCAAGCTCCAGAACCAAAGTGGGAAGACGGTGTCCT TGAGCAGCTTCAAGAACAAAAAGCAAGTTGTGGTGCGTGTAGACCCCCTG AGAGGCGTTACTCACCGACAGCTAATTATTCAACCATTTTACTGTTGAAG TCACTTCGAAATCACGTGGAAGGATCCCGAAGATACATTACAGTATGTGA TCATGTTTTTCTCTTATTAATAGTATTGGTTTTCAGGATGACTTTCTTCA CCTGTACGCGGTGACCAATTCAAAATCCCTCGTTGTCTGCTGAATGAAGC GTGCATGTACCCGAGCGCAGTCATGAACATAACGATTCCGTTTCGGGAGA GGCGTTATCGAAAGAAACATATAAAATAAATCATCCTCTTTACCGTTCCC ACATGATGACATGTGACGATTTTGTGCTCATCAGTAGTAATTTAATTTTT AAAAAACTTGAATTCATTCCAACCCTCCGACCATCCACGCCTTCTTAGCA CCATGAGAGGTGCAGTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGT ACAATACTACCTCTGAGCACAAAATGTAAATAAACCGTGTTCCCCAATAG TAAGTTCATCGGGTCATGTGGGGACACCAAACGAAAGCCTAGGAGTGGAC TTGTACAAGAAGAGGAGTTGCAAGAGGGAGAGAGGGGGGTGTGGGGGGGG GGAAATAAGTGATTCTCTGATCTGTTGGGTAAATTGGTTGTACACACACG CGAACCTGCCGATAGTTGGTACCCTGGACTTCATTTCTCATTGTGTAAAA AGGGTGTGGATTGTGGATGTTCGGAGGGTTTGAGTTAGAGTTGATCTGTT TAAAAAGAAAAACACGAGTCATATCCGCACCGTTCGTGTTGGCAGAGGTC ACGAAGTGAATTCGAGGCGCTTCTTATGAGCATACATGTTAACCCTTTTA GAACTCGATTTCAAGTTTTATATTGAATTTAGTGTCTAAAAAAACAGATC GAGTTCCATAGGGGTTAAACTGGCGGAGTCCCCCCCAAACGTCAAGGACC CAATTCTCTCCCTGGATAAGTCTGACATTTTGACTACTGTAACACGGCAG GATATATGTTTATTAATAAGCGCACGTTGGGCAAAAATCGCTTGGGCAGT GATGCAGCCTTACCAAAACGCAGAAGGTAGCTTTACGGATCAACCCACGC GTGGCGATCGAGAGCAGGCCCAATTTTGAAGAGCTTAGATACTTGTACGT CGTTGTGCCGCGTTATCTACCTTACAGCACAGCTGAACCAACGTTAGACC CAATCTTTGCAGATACGTGGGGAGAGAGGTGAAAGTTCCCCGGGTACGGC GCAAAACTTCAGACCACAGCTCGAACAGTTGGGTGTTTTCTTTCAGGCGA TCGCGCATAGAAGTCGGCTCACAGAACATCACCCCCCCCCCCCTTTAAAA CAATGCATCTCACACACCGCATTTTCAGTCCGTATCAGTCTTGACCCTTT CCAACATCGAGATAAACACTTTGCTCCACTTTTCGTATTCCGTCAAATCG TGCAAAAGGTGTTCTTCTATCCCAAAGACAGCACGCCGGGCTGCACAAAA GAGGCACAGACGTTCCAGGCTGACCTTGATCAGTTCAAGAAGCTCGGGGC GGAGGTGATCGGAATCAGTAGCGATGCTGACCACACGGCCTTCGTGAAGG AGAATGGTCTGAGCATGACGCTCTTGTCCGACATCGGTGGCGAGGTGATT AGAGCATTAGCTCGTCTTAAAGAGGAGGCTTGATGAATGCGCGTAATTCG AGCGGGCGTCTCCGTTCGCTCTTTTCTCGTGGTTATTCAATATTATTATT TTTTTATTTTTTTTCGAGGGCTTTTTTTTAAATCCTAGCACCATCATTGA CTACGGGCGCTAACATTACTGTCCTAATGCCCCTCAAACTCTCTTTCTCT CCTCGATGAATGAATATTCGCGATGCGGATGCGGAGTGCTTCTTAACACA GTGCAGCTTACATTCTTCGTTTTCCTAATATTTTGGGATCAACCCGTGCT TCCTTCCTTCCTCTCGTTGTCTGTAGGCTATACGCCCGAGTTACATCACT TTCTTTTTGCCTTCCACATTTTGTAATGAGCATGTTGAGTGACCAATCTA AGATGTGCATTTCAAGCACGGTGCTCTGCTTTGCCTTTCTTTTGTGACAA CGGGAAGTCTGCCTTTCTTACACACATTCAAAATGTCGGCTACATATATT TTTGAGTGCCCATACGTTTAGGCAGATACACGACTAGGCGGAAGTTTGAA CTGAGTCTGCAGCATGTAGACCCAAACGCTGATCGCCCTCGCTGCCATGG ACCATGGACCATCAGGTTCGCAAGGACTGGAAAGTGAAGAAGGCCGCGTT CGGTACCATCGATGGGCGCGTCACCTACGTGATCGACAAGAGCGGCGTGG TGACCAAAATATACGACAATCTCCTTGATGGTGGTGCGCACAGCAAGGAG GCCCTCAAAGCTCTTCAGGCTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6839:1292..3865-

>mRNA_H-elongata_contig6839.14466.1 ID=mRNA_H-elongata_contig6839.14466.1|Name=mRNA_H-elongata_contig6839.14466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig6839:1292..3865- (Himanthalia elongata Himel1 dioecious)
TCTCTCCAGGGAGCCATATCGTCTACGTTGCGCATGGTGTCAGTGGGCCA
GGCCCCTCCCGACTTCAAGCTCCAGAACCAAAGTGGGAAGACGGTGTCCT
TGAGCAGCTTCAAGAACAAAAAGCAAGTTGTGTCTCTCCAGGGAGCCATA
TCGTCTACGTTGCGCATGGTGTCAGTGGGCCAGGCCCCTCCCGACTTCAA
GCTCCAGAACCAAAGTGGGAAGACGGTGTCCTTGAGCAGCTTCAAGAACA
AAAAGCAAGTTGTGGTGTTCTTCTATCCCAAAGACAGCACGCCGGGCTGC
ACAAAAGAGGCACAGACGTTCCAGGCTGACCTTGATCAGTTCAAGAAGCT
CGGGGCGGAGGTGATCGGAATCAGTAGCGATGCTGACCACACGGCCTTCG
TGAAGGAGAATGGTCTGAGCATGACGCTCTTGTCCGACATCGGTGGCGAG
GTGTTCTTCTATCCCAAAGACAGCACGCCGGGCTGCACAAAAGAGGCACA
GACGTTCCAGGCTGACCTTGATCAGTTCAAGAAGCTCGGGGCGGAGGTGA
TCGGAATCAGTAGCGATGCTGACCACACGGCCTTCGTGAAGGAGAATGGT
CTGAGCATGACGCTCTTGTCCGACATCGGTGGCGAGGTTCGCAAGGACTG
GAAAGTGAAGAAGGCCGCGTTCGGTACCATCGATGGGCGCGTCACCTACG
TGATCGACAAGAGCGGCGTGGTGACCAAAATATACGACAATCTCCTTGAT
GGTGGTGCGCACAGCAAGGAGGCCCTCAAAGCTCTTCAGGCTTAAGTTCG
CAAGGACTGGAAAGTGAAGAAGGCCGCGTTCGGTACCATCGATGGGCGCG
TCACCTACGTGATCGACAAGAGCGGCGTGGTGACCAAAATATACGACAAT
CTCCTTGATGGTGGTGCGCACAGCAAGGAGGCCCTCAAAGCTCTTCAGGC
TTAA
back to top