mRNA_H-elongata_contig68033.14428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68033.14428.1
Unique NamemRNA_H-elongata_contig68033.14428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A6H5JDY7_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 9.420e-32
Identity = 53/77 (68.83%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGSLETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGDRFLHHSFVCKLL 231
            P+I+G+IRLGLVFQ+KE+LGS+E +EE LTH+GL+ LR++PR+ ++GDTGR+RLPIFSFL+RHG+R+LHH+FVC LL
Sbjct:  477 PDILGSIRLGLVFQMKEKLGSVEEKEERLTHMGLTALRSNPRICLLGDTGRKRLPIFSFLVRHGNRYLHHNFVCALL 553          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: D7G374_ECTSI (Class-V aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G374_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.530e-29
Identity = 53/80 (66.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGSLETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGDR---FLHHSFVCKLL 231
            P+I+G+IRLGLVFQ+KE+LGS+E +EE LTH+GL+ LR++PR+  +GDTGR RLPIFSFL+RHG+R   +LHH+FVC LL
Sbjct:  424 PDILGSIRLGLVFQMKEKLGSVEEKEERLTHMGLTALRSNPRIFFLGDTGRERLPIFSFLVRHGNRGARYLHHNFVCALL 503          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.070e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLG--SLETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGD---RFLHHSFVCKLL 231
            P+I+G+IRLGL  Q+KE +G   L+ REEAL  LGLSTLRAH  +VV+GD+G++RLPIFSFL+R      RFLH++FVC LL
Sbjct:  388 PDILGSIRLGLAVQMKESMGRRGLQGREEALAELGLSTLRAHKGIVVLGDSGKKRLPIFSFLVRTASSSGRFLHYNFVCALL 469          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A6H5JLY0_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.930e-20
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGSLETREE---ALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGD---RFLHHSFVCKLL 231
            P+I+G+IRLGL  Q+KE +G  E +     AL  LGLSTLRAH  +VV+GD+G++RLPIFSFL+R      RFLH++FVC LL
Sbjct:  399 PDILGSIRLGLAVQMKESMGRRELQARIYRALAELGLSTLRAHKGIVVLGDSGKKRLPIFSFLVRTASSSGRFLHYNFVCALL 481          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A6G0WTZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTZ0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLG--SLETREEALTHLGLSTLRAHPRVVVIG-DTGRRRLPIFSFLIRHGDRFLHHSFVCKLL 231
            P+ +G+IRLGL F+LK+R+G  ++  REE      L  L+ H RVV++G +  + RLPIFSFL+R G RFLH++FVC LL
Sbjct:  361 PDTLGSIRLGLAFELKQRIGVSTIMEREERHVRRVLDALQNHDRVVLLGHEFSQARLPIFSFLVRAGRRFLHYNFVCALL 440          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A1V9YME9_9STRA (Class V aminotransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YME9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.550e-15
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGS--LETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGDRFLHHSFVCKLL 231
            P+IVGA+R  +VFQLK  LG   L  +E A+     + L+AHP VVV+GD    RLP FSFLIRH   FLH  FV +LL
Sbjct:  356 PDIVGALRAAMVFQLKASLGHAFLRAQEAAVATRMYTALQAHPNVVVLGDPAAPRLPTFSFLIRHDTLFLHPQFVSRLL 434          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A1V9ZU97_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU97_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGS--LETREEALTHLGLSTLRAHPRVVVIGD--TGRRRLPIFSFLIRHGDRFLHHSFVCKLL 231
            P+ +GAIRLGL  ++K R+G   +  REEA     L+ L AHP VV++G       RLPIFSFL+R GDRFLH++FVC LL
Sbjct:  330 PDNLGAIRLGLALEVKHRIGVSYILEREEAHVAQVLAALSAHPSVVLLGHDVAAPTRLPIFSFLVRAGDRFLHYNFVCALL 410          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: K3WC28_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC28_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGSLETREEALTHLGL--STLRAHPRVVVIGDTGRRRLPIFSFLIRHGDRFLHHSFVCKLL 231
            P+I+G+IRLGL F+LK+R+G+    E    H+     TL ++  VV++G +   +LPIFSFLIR GDRFLH++FVC LL
Sbjct:  375 PDILGSIRLGLAFELKQRVGAARIMEIEKQHVTRVRGTLGSNENVVLLGRSDVDQLPIFSFLIRFGDRFLHYNFVCALL 453          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: UPI0009E1BDC2 (uncharacterized protein LOC110066069 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1BDC2)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGS--LETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRH--GDRFLHHSFVCKLL 231
            P IVGAIR GLVFQLK+ +G+  + TREE L    L+   +   +V++G T   RLPIFSFLIRH     FLHH++VC LL
Sbjct:  349 PAIVGAIRAGLVFQLKQEIGAAAIMTREEELCRKALAAWSSSSNLVLLGSTSVPRLPIFSFLIRHPIAGVFLHHNYVCALL 429          
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Match: A0A7M7NSX4_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NSX4_STRPU)

HSP 1 Score: 78.6 bits (192), Expect = 2.940e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 PEIVGAIRLGLVFQLKERLGS--LETREEALTHLGLSTLRAHPRVVVIGDTGRRRLPIFSFLIRHGD--RFLHHSFVCKLL 231
            P +VGAIR GLV QLKE +G   +  RE+ +    +  L + P +V++G T R RLPIFSFLIRH    +FLHH+F+C LL
Sbjct:  327 PSVVGAIRAGLVMQLKETIGHDVIMKREKEICSSVMQRLSSCPNLVMLGSTSRPRLPIFSFLIRHPHTRQFLHHNFICALL 407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68033.14428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDY7_9PHAE9.420e-3268.83Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
D7G374_ECTSI2.530e-2966.25Class-V aminotransferase n=1 Tax=Ectocarpus silicu... [more]
D7FR81_ECTSI1.070e-2260.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLY0_9PHAE3.930e-2056.63Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
A0A6G0WTZ0_9STRA1.150e-1551.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YME9_9STRA1.550e-1553.16Class V aminotransferase n=1 Tax=Achlya hypogyna T... [more]
A0A1V9ZU97_9STRA1.570e-1553.09Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WC28_GLOUD1.570e-1550.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI0009E1BDC21.570e-1553.09uncharacterized protein LOC110066069 n=1 Tax=Orbic... [more]
A0A7M7NSX4_STRPU2.940e-1550.62Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68033contigH-elongata_contig68033:1473..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D7G374
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size233
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68033.14428.1prot_H-elongata_contig68033.14428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68033 1475..2785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.3181808-CDS-H-elongata_contig68033:1474..15081622931073.3181808-CDS-H-elongata_contig68033:1474..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 1475..1508 -
1691679686.6866956-CDS-H-elongata_contig68033:1474..15081691679686.6866956-CDS-H-elongata_contig68033:1474..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 1475..1508 -
1622931073.3354821-CDS-H-elongata_contig68033:1916..20441622931073.3354821-CDS-H-elongata_contig68033:1916..2044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 1917..2044 -
1691679686.7040615-CDS-H-elongata_contig68033:1916..20441691679686.7040615-CDS-H-elongata_contig68033:1916..2044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 1917..2044 -
1622931073.3534567-CDS-H-elongata_contig68033:2716..27851622931073.3534567-CDS-H-elongata_contig68033:2716..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 2717..2785 -
1691679686.7162812-CDS-H-elongata_contig68033:2716..27851691679686.7162812-CDS-H-elongata_contig68033:2716..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68033 2717..2785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68033.14428.1

>prot_H-elongata_contig68033.14428.1 ID=prot_H-elongata_contig68033.14428.1|Name=mRNA_H-elongata_contig68033.14428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
PEIVGAIRLGLVFQLKERLGSLETREEALTHLGLSTLRAHPRVVVIGDTG
RRRLPIFSFLIRHGDRFLHHSFVCKLL
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mRNA from alignment at H-elongata_contig68033:1473..2785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68033.14428.1 ID=mRNA_H-elongata_contig68033.14428.1|Name=mRNA_H-elongata_contig68033.14428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1313bp|location=Sequence derived from alignment at H-elongata_contig68033:1473..2785- (Himanthalia elongata Himel1 dioecious)
CCAGAAATTGTCGGTGCAATTCGCTTGGGCCTCGTTTTCCAGCTGAAGGA AAGGCTTGGAAGCTTGGAGGCAAGTCGTTGTGGATGAAATCTGAGTAGAT CACAACAAACGCGACGTAGTTGGTAATCCCTATTATTTTCTTAAGCCGAT CCCCGCGGCCACGGTAGTCTGGCAAGAGTTTTAATGATTCCTTCTCGGTT GTACATATGTAACCGTTACGCCCATCGTATTATTTCTCAACAAGTGTTCA GCCATCACGTTGGGCCATTACGCGGGGTTATTGCAAGAACGGCATCATCC CTAGAACGGCATCTTCAAACGTTTAAAATTATTCAATGACCCCTTGCGCC GTCAAACGTCCCTCCATCACCACCCGGATTTTCCCTGTGCGGGACCCAGG CTTTGGTGGTCACCCTTCATGACGTGTACGATTGTAGCATGAATTGACCG CGGCCTTGTGGCCCGACATAAGTCATTGGCCCATCGTGCCCGGTTAACCA CAATGTAGTACTGATGTGCTGATTTTAGCTAGTCTGGAGCCTACGACTGC GAGAAAATTAATAAGATGCATGCTTTGCACGTAAATGAGCTCGTGGTTTG AGGCAGCGCCACGTAGCAAGCCCTAACTACATTATAATTTCGGATTTTAA AAAGAGTAGCTAGGATCTGCACTGTCGGTATAGCACTATTGAAGTATATA TAATAATCTCTGCACGCTTACGATCGACGGCTTTGTCACAGACACGGGAG GAAGCGCTGACACACCTCGGGTTGTCTACCCTCAGGGCCCACCCTCGCGT AGTCGTGATCGGCGACACGGGCAGGAGGCGACTCCCGATTTTCTCCTTCC TTATCCGTCACGGTGACCGGTGAGTATCAGTGACGTGACGGAATTATTTG CCAATATCAAGTATAGACGAGAAATCTGCCTCACCAATCTATCAATTTTA ATCTTCTGACAAAGAAGATATGATCACACGATATAGGGTAACTCAAGATA ATACGTGTTCTTTTTTGTCAGAGGACGAACAAAGATAGATTGGAAAATGT TAGGGAAGAAACGCTAGAGGTAAATCCCCAGCCAAAACATACGATAAAGC TTCCTCAAGCAGACGGGCAAAACCTTGCAATAGAAGCAAACGTCGGTTAG TGTAGAAACGAGCATCGTCACCCATAAAAGCTGAAAAGGGAATATATATT ACCCTACGCGTACGACGAACAGTGCTATAGCTCCTGATGATTCCTTTGCG TGTGACAATTCGGCTTACCGACGGCAGGTTCCTTCACCATAGCTTCGTGT GCAAGCTGCTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig68033:1473..2785-

>mRNA_H-elongata_contig68033.14428.1 ID=mRNA_H-elongata_contig68033.14428.1|Name=mRNA_H-elongata_contig68033.14428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig68033:1473..2785- (Himanthalia elongata Himel1 dioecious)
CCAGAAATTGTCGGTGCAATTCGCTTGGGCCTCGTTTTCCAGCTGAAGGA
AAGGCTTGGAAGCTTGGAGCCAGAAATTGTCGGTGCAATTCGCTTGGGCC
TCGTTTTCCAGCTGAAGGAAAGGCTTGGAAGCTTGGAGACACGGGAGGAA
GCGCTGACACACCTCGGGTTGTCTACCCTCAGGGCCCACCCTCGCGTAGT
CGTGATCGGCGACACGGGCAGGAGGCGACTCCCGATTTTCTCCTTCCTTA
TCCGTCACGGTGACCGACACGGGAGGAAGCGCTGACACACCTCGGGTTGT
CTACCCTCAGGGCCCACCCTCGCGTAGTCGTGATCGGCGACACGGGCAGG
AGGCGACTCCCGATTTTCTCCTTCCTTATCCGTCACGGTGACCGGTTCCT
TCACCATAGCTTCGTGTGCAAGCTGCTGGTTCCTTCACCATAGCTTCGTG
TGCAAGCTGCTG
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