mRNA_H-elongata_contig6801.14423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6801.14423.1
Unique NamemRNA_H-elongata_contig6801.14423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6801.14423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6801contigH-elongata_contig6801:1350..3238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size468
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6801.14423.1prot_H-elongata_contig6801.14423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6801 1350..3074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.6623504-CDS-H-elongata_contig6801:1349..13761622931072.6623504-CDS-H-elongata_contig6801:1349..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 1350..1376 -
1691679686.4640107-CDS-H-elongata_contig6801:1349..13761691679686.4640107-CDS-H-elongata_contig6801:1349..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 1350..1376 -
1622931072.6836138-CDS-H-elongata_contig6801:1741..18191622931072.6836138-CDS-H-elongata_contig6801:1741..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 1742..1819 -
1691679686.4736736-CDS-H-elongata_contig6801:1741..18191691679686.4736736-CDS-H-elongata_contig6801:1741..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 1742..1819 -
1622931072.7027214-CDS-H-elongata_contig6801:2090..21941622931072.7027214-CDS-H-elongata_contig6801:2090..2194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 2091..2194 -
1691679686.4836988-CDS-H-elongata_contig6801:2090..21941691679686.4836988-CDS-H-elongata_contig6801:2090..2194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 2091..2194 -
1622931072.7181516-CDS-H-elongata_contig6801:2980..30741622931072.7181516-CDS-H-elongata_contig6801:2980..3074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 2981..3074 -
1691679686.4983437-CDS-H-elongata_contig6801:2980..30741691679686.4983437-CDS-H-elongata_contig6801:2980..3074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6801 2981..3074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.7311566-UTR-H-elongata_contig6801:3074..32381622931072.7311566-UTR-H-elongata_contig6801:3074..3238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6801 3075..3238 -
1691679686.5093565-UTR-H-elongata_contig6801:3074..32381691679686.5093565-UTR-H-elongata_contig6801:3074..3238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6801 3075..3238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6801.14423.1

>prot_H-elongata_contig6801.14423.1 ID=prot_H-elongata_contig6801.14423.1|Name=mRNA_H-elongata_contig6801.14423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MSFLPICNVCLLEIGSGTQGILLSCGHFVCYGCCRAPGPSICPHCGSPAR
AAALDHPPAEVQDYLQSPLAQFRASSDVVMFQLEHFRSVAKQASKALHEL
R
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mRNA from alignment at H-elongata_contig6801:1350..3238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6801.14423.1 ID=mRNA_H-elongata_contig6801.14423.1|Name=mRNA_H-elongata_contig6801.14423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1889bp|location=Sequence derived from alignment at H-elongata_contig6801:1350..3238- (Himanthalia elongata Himel1 dioecious)
CGACGGACAGTGGAACTCGAGCATTGGAACTACACTAGGGCAACGTTGAC
CAAAATTCAGCCCCTGTGCCCAGAAAATTGCATCCGCTTCGACAGGGACT
GTTTTCTCCTTGAGCCCACCTGATATTTGAGAAGCGCCGCTCGAACGTCG
ACTTACCCCCTCCCATGTCTTTCCTTCCGATCTGCAACGTCTGCCTGTTG
GAGATAGGGTCCGGGACACAGGGGATATTGCTATCGTGCGGTCATTTCGT
GTGCTACGGTAAGTGTTGCCCCGTAGCATCAGCTCGCATGTGAAGTGGTA
TGAGTTCTCGTCAATCGCGGCCAAGAAACAACATTCAAATTCGCCGACCT
TTTTGCAGACCTTACGCCAGAGCATGACAGTGTTGATAGCATCAACACTG
CGTTGCCGACAGGAATTTTGCCACTTGGTTCAGCTTGCCACCGTGTCGTG
TCTTGAACGGTTCCCGAGTGAGACCGTTGGTCCAGTCTGAGAATGTGCAC
GGATCATCCTGTCGGCGCATGTATATTGCCCAAAGTTAAGCGCTACCTAA
GCTAGAGATGCGCTGTGTGCACTTAGTGGCGACGTCGCGCATTCCCCTCC
TGGGAGCACTTCACGCGCCACATCCGCTTGCAAATATAGCTAGCTCTCCA
TGGGGTGGGGGTAGGGGTAGGTTATTCGAAAACTGATGCGGCAAACCCTT
ACGTATTGCACCGACTTGCACGGTCTAATGCAAATTGGTAGAAAGGGAAC
ACTACTCGTACGCAGTCTTCTCTACCACTGCTCTACATGGGCTATTTGTA
TAAGTTCTCGTCGACGTCCATCGCGCGCGCTGTCGAACCTGCGCGCCGGT
ACGGGTTCATGAGGGAAACAGCAGCAAGAGTAATATGGAGCAAGGTGTCC
TTTCGAGAACCGTTGTTTGGTCGAGGACTTTTTATATTCTCTACATTACA
CCATACACACGACCGTTTATCCTTCTTTGTACTGCCGTAATTTCCACCTT
CGCGCTTGTATATTCCTAAGATCGCGTCGCTTTTACCCCCACAGGTTGCT
GCAGAGCGCCTGGACCATCTATATGTCCTCATTGCGGGAGTCCAGCGCGT
GCAGCGGCGTTGGACCACCCTCCCGCAGAAGTGCAAGACTACCTGCAGGT
GCGTAGGAATTCAGGATGAGCTACCAGGCATTAAAATAGGGTTTCTCCAT
CGTCCGAAAGCTTCGAGGCGATCGATGATAACTAGATGTTGTAGAGCTGT
GTGACGGAAAGCCTTGATCTGTCGGCAGAAGTATTTGGTTCAAAATAAAA
CTCGGAGACGCATTCATGCGACTCTGTTTCATGTCGCGGATGACATCAGG
CGTCAAAACTGTTCTTCCCGCCGCTTCTCTCGCGGTGCTCCTCAACACTT
CCGTCGCCGCCCGCGGCAGAGCCCTTTGGCGCAGTTCAGAGCGTCTAGCG
ACGTGGTCATGTTTCAGCTCGAGCACTTCCGCTCCGTTGCAAAGCAGGCA
AGCTCTCACCATTACATCAAGTAGAATAATTGCTGGACCTTTGTGCGTAG
TACGACGGAAGGTGTGTTGAAAAGCGGCGGCCTACGGCAAGGACCAGCAC
GTTTGACACTGGCTGAGATGGGTCGGGTCGGGTCGTTGTGGGATTGAGCG
CCCGCGGCGATAACTTTTCAGTTATTACCCCGCCATTTGTCGGTCGGTGC
TTGGTAAATACTCAAGCCCCGGTGAATGCAGTCTTCACCCAAGTGAAGCA
AGCCGGACATGGGTGGGGTCGTGGGTGCGTTGATCTCCTGCCAATGGTCG
GGCGCCCGAAAAAACGTTTCTCTCCGCGCTACAAGCATCTCGCATGTTCG
CTGATGCGTTAGGCGAGCAAGGCACTCCACGAGCTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig6801:1350..3238-

>mRNA_H-elongata_contig6801.14423.1 ID=mRNA_H-elongata_contig6801.14423.1|Name=mRNA_H-elongata_contig6801.14423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6801:1350..3238- (Himanthalia elongata Himel1 dioecious)
ATGTCTTTCCTTCCGATCTGCAACGTCTGCCTGTTGGAGATAGGGTCCGG
GACACAGGGGATATTGCTATCGTGCGGTCATTTCGTGTGCTACGATGTCT
TTCCTTCCGATCTGCAACGTCTGCCTGTTGGAGATAGGGTCCGGGACACA
GGGGATATTGCTATCGTGCGGTCATTTCGTGTGCTACGGTTGCTGCAGAG
CGCCTGGACCATCTATATGTCCTCATTGCGGGAGTCCAGCGCGTGCAGCG
GCGTTGGACCACCCTCCCGCAGAAGTGCAAGACTACCTGCAGGTTGCTGC
AGAGCGCCTGGACCATCTATATGTCCTCATTGCGGGAGTCCAGCGCGTGC
AGCGGCGTTGGACCACCCTCCCGCAGAAGTGCAAGACTACCTGCAGAGCC
CTTTGGCGCAGTTCAGAGCGTCTAGCGACGTGGTCATGTTTCAGCTCGAG
CACTTCCGCTCCGTTGCAAAGCAGAGCCCTTTGGCGCAGTTCAGAGCGTC
TAGCGACGTGGTCATGTTTCAGCTCGAGCACTTCCGCTCCGTTGCAAAGC
AGGCGAGCAAGGCACTCCACGAGCTGCGGGCGAGCAAGGCACTCCACGAG
CTGCGG
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