mRNA_H-elongata_contig67830.14396.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.290e-10 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
+ WV D+GAS HF N+S+ + +R A+G IEG G + L + + +V ++L NV+Y+P L +NL SL V+ G
Sbjct: 295 NEWVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQHG 378
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H7E0P8_9EURO (Uncharacterized protein n=1 Tax=Endocarpon pusillum TaxID=364733 RepID=A0A8H7E0P8_9EURO) HSP 1 Score: 54.3 bits (129), Expect = 3.610e-7 Identity = 27/80 (33.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGK-VVHLKLSNVAYVPQLSHNLISLRAVA 243
W+ D+GA+ + + + + + +R A+G EGYGD++++L+ EGK + L + NV +VPQL NL+S+ +A
Sbjct: 4 WLIDSGATHNMTPFRHNYVTYTTASMTVRCANGDSTSAEGYGDVLINLKKEGKDPIPLLVKNVWFVPQLDMNLLSVAELA 83
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: UPI000D630D36 (uncharacterized protein LOC112505964 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D630D36) HSP 1 Score: 54.7 bits (130), Expect = 1.310e-6 Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 1 DRWVFDTGASQHFSNDSAHMLDFRECQKF-MRTASGKRFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISL 231
D W D+G S H +N+ E QK +RT KR ++G G++ + + K+ H K+SNV +VP L H+L+S+
Sbjct: 175 DTWYIDSGCSNHMTNNKGLFTQLDETQKREVRTGDDKRLIVQGIGEISI----DTKLGHKKISNVYFVPNLKHSLLSV 248
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 1.870e-5 Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 4 RWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGK 165
R+V DTGA+ H +S + + EC + +R A+G+ FPI GYGD+ + LR++ K
Sbjct: 94 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVLLRTKAK 147
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A085MVT7_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MVT7_9BILA) HSP 1 Score: 51.2 bits (121), Expect = 2.560e-5 Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLR-SEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
W D+GAS H S+D + ++ + A G+ + G GD L +GKV HL++ +V YVP L+ +L+S++ + +G
Sbjct: 97 WCVDSGASSHMSSDRSFFATLSPVKRNVYLADGRHAKVTGIGDGRLTCALPDGKVQHLEVRDVLYVPSLNGSLLSVKMLDKAG 179
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A085LQ26_9BILA (Uncharacterized protein (Fragment) n=3 Tax=Trichuris suis TaxID=68888 RepID=A0A085LQ26_9BILA) HSP 1 Score: 51.2 bits (121), Expect = 2.590e-5 Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLR-SEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
W D+GAS H S+D + ++ + A G+ + G GD L +GKV HL++ +V YVP L+ +L+S++ + +G
Sbjct: 97 WCVDSGASSHMSSDRSFFATLSPVKRNVYLADGRHAKVTGIGDGRLTCALPDGKVQHLEVRDVLYVPSLNGSLLSVKMLDKAG 179
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A420HG15_9PEZI (Uncharacterized protein n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420HG15_9PEZI) HSP 1 Score: 50.1 bits (118), Expect = 4.660e-5 Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGK-RFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISL 231
D+W+ D GA H +N + + + R+ +GK + I YG++ L LRS +L L+NVAYVP + N +SL
Sbjct: 151 DKWIIDNGADTHVTNATCNFEETRKAGADELLYAGKGAYKITSYGNVKLPLRSHVPGEYLLLTNVAYVPGIMTNCVSL 228
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM) HSP 1 Score: 50.4 bits (119), Expect = 4.840e-5 Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGD---LILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
D W+ D+G + H + D ++ + ++ +GK PI G G L L+ + + ++L+NVA+VP L NLISL V D G
Sbjct: 346 DTWIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTDKG 431
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H8T0D5_9AGAM (Integrase core domain protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8T0D5_9AGAM) HSP 1 Score: 50.1 bits (118), Expect = 6.280e-5 Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGD---LILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
D W+ D+G + H + D ++ + ++ +GK PI G L L+ + K +KL+NVA++P L NLISL V D G
Sbjct: 346 DTWIADSGTTTHIAIDWNAFSNYTKSSSYVAGVTGKE-PIMGRSTVELLCLNSTEKNKYTKIKLTNVAHMPSLPANLISLSLVTDKG 431
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A232EDH5_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EDH5_9HYME) HSP 1 Score: 48.1 bits (113), Expect = 8.230e-5 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 7 WVFDTGASQHFSNDS--AHMLDFRECQKFMRTASGKRFPIEGYGDLILHL--RSEGKVVHLKLSNVAYVPQLSHNLISLRAV 240
W+ D+GAS H ND H L + K + A R ++G G+ IL S ++ HL+ V Y+PQL+ NL+S +AV
Sbjct: 45 WILDSGASVHMCNDLNLLHKLS-KSSIKTVTAADHNRIAVQGEGEAILSSTQNSSDRIFHLR--RVLYIPQLTANLVSTKAV 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67830.14396.1 >prot_H-elongata_contig67830.14396.1 ID=prot_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLback to top mRNA from alignment at H-elongata_contig67830:202..489- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67830.14396.1 ID=mRNA_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig67830:202..489- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67830:202..489- >mRNA_H-elongata_contig67830.14396.1 ID=mRNA_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig67830:202..489- (Himanthalia elongata Himel1 dioecious)back to top |