mRNA_H-elongata_contig67830.14396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67830.14396.1
Unique NamemRNA_H-elongata_contig67830.14396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.290e-10
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
            + WV D+GAS HF N+S+   +       +R A+G    IEG G + L + +   +V ++L NV+Y+P L +NL SL  V+  G
Sbjct:  295 NEWVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQHG 378          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H7E0P8_9EURO (Uncharacterized protein n=1 Tax=Endocarpon pusillum TaxID=364733 RepID=A0A8H7E0P8_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 3.610e-7
Identity = 27/80 (33.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGK-VVHLKLSNVAYVPQLSHNLISLRAVA 243
            W+ D+GA+ + +    + + +      +R A+G     EGYGD++++L+ EGK  + L + NV +VPQL  NL+S+  +A
Sbjct:    4 WLIDSGATHNMTPFRHNYVTYTTASMTVRCANGDSTSAEGYGDVLINLKKEGKDPIPLLVKNVWFVPQLDMNLLSVAELA 83          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: UPI000D630D36 (uncharacterized protein LOC112505964 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D630D36)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-6
Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 DRWVFDTGASQHFSNDSAHMLDFRECQKF-MRTASGKRFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISL 231
            D W  D+G S H +N+        E QK  +RT   KR  ++G G++ +    + K+ H K+SNV +VP L H+L+S+
Sbjct:  175 DTWYIDSGCSNHMTNNKGLFTQLDETQKREVRTGDDKRLIVQGIGEISI----DTKLGHKKISNVYFVPNLKHSLLSV 248          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.870e-5
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 RWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLRSEGK 165
            R+V DTGA+ H   +S   + + EC + +R A+G+ FPI GYGD+ + LR++ K
Sbjct:   94 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVLLRTKAK 147          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A085MVT7_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MVT7_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 2.560e-5
Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLR-SEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
            W  D+GAS H S+D +        ++ +  A G+   + G GD  L     +GKV HL++ +V YVP L+ +L+S++ +  +G
Sbjct:   97 WCVDSGASSHMSSDRSFFATLSPVKRNVYLADGRHAKVTGIGDGRLTCALPDGKVQHLEVRDVLYVPSLNGSLLSVKMLDKAG 179          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A085LQ26_9BILA (Uncharacterized protein (Fragment) n=3 Tax=Trichuris suis TaxID=68888 RepID=A0A085LQ26_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 2.590e-5
Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    7 WVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHLR-SEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
            W  D+GAS H S+D +        ++ +  A G+   + G GD  L     +GKV HL++ +V YVP L+ +L+S++ +  +G
Sbjct:   97 WCVDSGASSHMSSDRSFFATLSPVKRNVYLADGRHAKVTGIGDGRLTCALPDGKVQHLEVRDVLYVPSLNGSLLSVKMLDKAG 179          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A420HG15_9PEZI (Uncharacterized protein n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420HG15_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 4.660e-5
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGK-RFPIEGYGDLILHLRSEGKVVHLKLSNVAYVPQLSHNLISL 231
            D+W+ D GA  H +N + +  + R+        +GK  + I  YG++ L LRS     +L L+NVAYVP +  N +SL
Sbjct:  151 DKWIIDNGADTHVTNATCNFEETRKAGADELLYAGKGAYKITSYGNVKLPLRSHVPGEYLLLTNVAYVPGIMTNCVSL 228          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 4.840e-5
Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGD---LILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
            D W+ D+G + H + D     ++ +   ++   +GK  PI G G    L L+   + +   ++L+NVA+VP L  NLISL  V D G
Sbjct:  346 DTWIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTDKG 431          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A8H8T0D5_9AGAM (Integrase core domain protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8T0D5_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 6.280e-5
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    1 DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGD---LILHLRSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSG 252
            D W+ D+G + H + D     ++ +   ++   +GK  PI G      L L+   + K   +KL+NVA++P L  NLISL  V D G
Sbjct:  346 DTWIADSGTTTHIAIDWNAFSNYTKSSSYVAGVTGKE-PIMGRSTVELLCLNSTEKNKYTKIKLTNVAHMPSLPANLISLSLVTDKG 431          
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Match: A0A232EDH5_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EDH5_9HYME)

HSP 1 Score: 48.1 bits (113), Expect = 8.230e-5
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    7 WVFDTGASQHFSNDS--AHMLDFRECQKFMRTASGKRFPIEGYGDLILHL--RSEGKVVHLKLSNVAYVPQLSHNLISLRAV 240
            W+ D+GAS H  ND    H L  +   K +  A   R  ++G G+ IL     S  ++ HL+   V Y+PQL+ NL+S +AV
Sbjct:   45 WILDSGASVHMCNDLNLLHKLS-KSSIKTVTAADHNRIAVQGEGEAILSSTQNSSDRIFHLR--RVLYIPQLTANLVSTKAV 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67830.14396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6G0X3B5_9STRA1.290e-1036.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7E0P8_9EURO3.610e-733.75Uncharacterized protein n=1 Tax=Endocarpon pusillu... [more]
UPI000D630D361.310e-635.90uncharacterized protein LOC112505964 n=1 Tax=Cynar... [more]
A0A6H5JJY0_9PHAE1.870e-542.59CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A085MVT7_9BILA2.560e-532.53Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A085LQ26_9BILA2.590e-532.53Uncharacterized protein (Fragment) n=3 Tax=Trichur... [more]
A0A420HG15_9PEZI4.660e-535.90Uncharacterized protein n=1 Tax=Golovinomyces cich... [more]
A0A8H8NUS4_9AGAM4.840e-533.33Integrase core domain protein n=2 Tax=Rhizoctonia ... [more]
A0A8H8T0D5_9AGAM6.280e-533.33Integrase core domain protein n=1 Tax=Rhizoctonia ... [more]
A0A232EDH5_9HYME8.230e-536.59Uncharacterized protein n=1 Tax=Trichomalopsis sar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67830contigH-elongata_contig67830:202..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue6e-08
Seed eggNOG ortholog36651.K9FQN7
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.2637792-CDS-H-elongata_contig67830:201..4891622931070.2637792-CDS-H-elongata_contig67830:201..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67830 202..489 -
1691679685.5664783-CDS-H-elongata_contig67830:201..4891691679685.5664783-CDS-H-elongata_contig67830:201..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67830 202..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67830.14396.1prot_H-elongata_contig67830.14396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67830 202..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67830.14396.1

>prot_H-elongata_contig67830.14396.1 ID=prot_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
DRWVFDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHL
RSEGKVVHLKLSNVAYVPQLSHNLISLRAVADSGGSYSGDIAGVRI
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mRNA from alignment at H-elongata_contig67830:202..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67830.14396.1 ID=mRNA_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig67830:202..489- (Himanthalia elongata Himel1 dioecious)
GACCGTTGGGTGTTTGACACCGGCGCTTCGCAGCATTTTAGCAATGACTC TGCGCACATGCTCGATTTCCGTGAATGCCAAAAGTTTATGCGGACGGCTA GCGGGAAAAGATTCCCGATCGAGGGTTACGGTGACCTTATCTTGCACCTT CGGTCTGAGGGAAAGGTGGTACATCTCAAGCTTAGCAACGTAGCGTATGT ACCACAACTCTCTCACAATCTGATATCACTAAGAGCAGTAGCCGATAGTG GAGGTTCATACTCCGGTGACATCGCCGGGGTACGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig67830:202..489-

>mRNA_H-elongata_contig67830.14396.1 ID=mRNA_H-elongata_contig67830.14396.1|Name=mRNA_H-elongata_contig67830.14396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig67830:202..489- (Himanthalia elongata Himel1 dioecious)
GACCGTTGGGTGTTTGACACCGGCGCTTCGCAGCATTTTAGCAATGACTC
TGCGCACATGCTCGATTTCCGTGAATGCCAAAAGTTTATGCGGACGGCTA
GCGGGAAAAGATTCCCGATCGAGGGTTACGGTGACCTTATCTTGCACCTT
CGGTCTGAGGGAAAGGTGGTACATCTCAAGCTTAGCAACGTAGCGTATGT
ACCACAACTCTCTCACAATCTGATATCACTAAGAGCAGTAGCCGATAGTG
GAGGTTCATACTCCGGTGACATCGCCGGGGTACGGATCGACCGTTGGGTG
TTTGACACCGGCGCTTCGCAGCATTTTAGCAATGACTCTGCGCACATGCT
CGATTTCCGTGAATGCCAAAAGTTTATGCGGACGGCTAGCGGGAAAAGAT
TCCCGATCGAGGGTTACGGTGACCTTATCTTGCACCTTCGGTCTGAGGGA
AAGGTGGTACATCTCAAGCTTAGCAACGTAGCGTATGTACCACAACTCTC
TCACAATCTGATATCACTAAGAGCAGTAGCCGATAGTGGAGGTTCATACT
CCGGTGACATCGCCGGGGTACGGATC
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