mRNA_H-elongata_contig67441.14350.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67441.14350.1
Unique NamemRNA_H-elongata_contig67441.14350.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 2.080e-127
Identity = 196/216 (90.74%), Postives = 209/216 (96.76%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ALE+FST+AADTENDP KES+FDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMV ADQWFVKEAEASTRAGS+WEF+AVR+SLQ+AMNE+AQRGKKA+D AVRAAQQ STAMQYLQMQQQQLAALQ QLYGGQ S WNFGAAYRIPD+NINLSGTYQQGKANLQM+CVPDEYSSMLG+QGFTHGVGPGNLGLSVNL+I
Sbjct:   72 ALEQFSTDAADTENDPTKESIFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVAADQWFVKEAEASTRAGSSWEFSAVRNSLQTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQMTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 287
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BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA)

HSP 1 Score: 295 bits (754), Expect = 5.410e-97
Identity = 159/240 (66.25%), Postives = 192/240 (80.00%), Query Frame = 3 
Query:   81 RARIEGGQYLQPGKNITKEL----ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ++++EGG+ L PG     +     ALE+FS+EA D END A ES+FDEKVEELE +LD+PLQ+VY++QL L+REKALQRYK  AKGSETSDYQAM+ ADQ++ KEAE+STR GS W++A  RSSLQS MNE+AQR KKA+D A++AAQQ STAMQ+            QQLYGG +S WNFG AYRIPDT+INLSG YQQG+AN+QMSCVPDEY+ +LG+ GFTHGVGPGNLGLSVNLNI
Sbjct:   52 KSKVEGGE-LCPGLGAKADAICNQALEQFSSEAPDAENDDALESIFDEKVEELEKTLDMPLQMVYLRQLALIREKALQRYKAAAKGSETSDYQAMIAADQFYAKEAESSTRQGSGWDYARERSSLQSTMNELAQRSKKAADAAIKAAQQQSTAMQFXXXXXXXXXXXXQQLYGG-SSPWNFGVAYRIPDTHINLSGNYQQGRANVQMSCVPDEYAPLLGASGFTHGVGPGNLGLSVNLNI 289
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BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.530e-74
Identity = 125/216 (57.87%), Postives = 162/216 (75.00%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ALE F+  A D  +D    + +D K+EELE +LD PLQ++Y++QL ++REKALQ Y+  ++ SE+SDY+AM+ AD  F +EAE +TR GS W++A  RS LQS MN++AQ  KK  D  +++A Q STAMQYLQ QQQ +  LQ QLYG Q+S WN G AYRIPDTN NL G+YQQG+ N Q+SCVPDEY+ +LG  GFT+GVGPGNLGLS+NL+I
Sbjct:   89 ALEEFAQNAPDAGDDALAAATYDRKLEELEAALDAPLQVLYLRQLAIVREKALQSYRASSRSSESSDYEAMLQADSMFQREAEEATREGSDWDYATERSYLQSVMNDMAQTSKKLIDVQMKSANQQSTAMQYLQQQQQMIQQLQMQLYG-QSSPWNVGLAYRIPDTNFNLQGSYQQGRGNFQLSCVPDEYAPLLGPNGFTNGVGPGNLGLSLNLSI 303
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: B7G8P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P6_PHATC)

HSP 1 Score: 237 bits (605), Expect = 3.580e-74
Identity = 128/236 (54.24%), Postives = 170/236 (72.03%), Query Frame = 3 
Query:   90 IEGGQYLQPGKNITKEL---ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ++GG+ ++     T+ +   ALE F++ A +  +D  K + FD K++ELE +LD PLQ++Y+KQL  LRE ALQRY+   K S  SDY+AM+ AD  FV+EA+ S R GS W++ A R+ LQS MN IA+  +KA D  + +AQQ  TAMQ+LQ QQQ +  LQ QLYG Q+S WN G AYRIPDTN NL G+YQQG+AN+Q+SCVPDEY+  LG  GFT+GVGPGNLGLS+NL++
Sbjct:   74 VDGGKVVEAFGTATETICNQALEGFASAAPEAGDDANKAATFDRKLQELEAALDAPLQVLYLKQLGFLREAALQRYRAATKTSGASDYEAMLQADSQFVREADGSIREGSDWDYTAERAFLQSVMNNIAESSRKAMDVQMNSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPFLGPNGFTNGVGPGNLGLSLNLSV 308
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BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS)

HSP 1 Score: 235 bits (600), Expect = 5.160e-74
Identity = 125/216 (57.87%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            A+E F+  A    +D    S +  K+EELE+SLD PLQ++Y++QL+LLRE+AL  Y++ +K S+ SDY+AM+ AD  F++ AE+STR  STW + A RS LQ+ M+E AQ  KK ++T V+++QQ STAMQ+LQ QQQ +  LQ QLYG Q+S WN G AYRIPDTN NL G+YQQG+AN+Q+SCVPDEY+ MLG  GFT+GVGPGNLGLS+NL+I
Sbjct:   50 AIEEFARSAPSPSDDNTASSAYARKLEELESSLDAPLQVLYLRQLSLLREQALSSYRSASKASDASDYEAMLAADAQFLRAAESSTRKASTWTYDAERSHLQTVMSEFAQTTKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 264
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A7R9WU24_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WU24_9STRA)

HSP 1 Score: 229 bits (583), Expect = 6.840e-71
Identity = 123/216 (56.94%), Postives = 158/216 (73.15%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ALE F+  A D  +DP   + +D+K+E+LE +LD PLQ++Y++QL LLRE ALQRY+  +K S  S+Y+AM+ AD  F ++AE STR GS W+F A RS LQ+ MN IA+ GKKA D  V++AQQ  T M +L      +  LQ QLYG Q+S WN G AYRIPDTN NL G+YQQG+AN+Q+SCVPDEY+  LG  GFT+GVGPGNLGLSVNL++
Sbjct:   91 ALEDFAKSAPDAGDDPTAAAEYDKKLEQLEAALDAPLQVLYLRQLALLRENALQRYRAASKTSGASEYEAMLQADGLFTRQAEDSTREGSDWDFTAERSYLQAVMNNIAESGKKAVDVQVKSAQQQQTTMAFLXXXXXTIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPFLGPNGFTNGVGPGNLGLSVNLSV 305
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A7S1H297_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H297_9STRA)

HSP 1 Score: 225 bits (573), Expect = 8.790e-71
Identity = 119/197 (60.41%), Postives = 154/197 (78.17%), Query Frame = 3 
Query:  198 SVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            S +D+K+EELE ++D  LQ++Y + L+LLREKAL R++  +K S TS+Y+AM+ AD  F +EAE +TR GS W++AA R+ LQS MN IA+ GKKA+D  +++AQQ  TAMQ+LQ QQQ +  LQ QLYG Q + WN G AYRIPDTN NL G+YQQGK N+Q+SCVPDEY+ MLG  GFT+GVGPGNLGLS+NL+I
Sbjct:    8 STYDKKLEELEAAVDAQLQILYFRSLSLLREKALTRFQMASKTSGTSEYEAMLSADSQFSQEAEDATRTGSDWDYAAERTYLQSVMNSIAESGKKATDVQMKSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QNTPWNVGFAYRIPDTNFNLQGSYQQGKTNVQLSCVPDEYAPMLGPSGFTNGVGPGNLGLSLNLSI 203
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A7S3P9Q4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9Q4_9STRA)

HSP 1 Score: 226 bits (577), Expect = 5.490e-70
Identity = 123/241 (51.04%), Postives = 168/241 (69.71%), Query Frame = 3 
Query:   75 MPRARIEGGQYLQP---GKNITKELALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            + R  +EGG+ ++       +    ALE F+  A D  +D +  S +D K++ELE ++D PL ++Y+KQL  LR+ ALQR++   K S +SDY+AM+ AD  FV+EAEA++R GS W+FA+ RS LQ+ M  IA+  +K  +  +  AQQ  T MQ+LQ QQQ +  LQ QLYG Q+S WN G AYRIPDTN NL G+YQQG+AN+Q+SCVPDEY+  LG  GFT+GVGPGNLGLS+NL++
Sbjct:   66 LRREIVEGGKVVEDFGAKAEVICNKALEDFAASAPDAGDDDSGASTYDRKMQELEAAVDAPLHVLYLKQLAFLRDTALQRFRASLKTSGSSDYEAMLQADAQFVREAEAASREGSDWDFASERSFLQAVMGNIAESSRKTMEVQMNNAQQQQTTMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQLSCVPDEYAPFLGPNGFTNGVGPGNLGLSLNLSV 305
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A7S4J3B5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3B5_9STRA)

HSP 1 Score: 226 bits (575), Expect = 9.750e-70
Identity = 121/216 (56.02%), Postives = 157/216 (72.69%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ALE F+  A D + D +  S ++ K+EELE  LD  LQ++Y++QL LLREKALQ Y+   + +E SDY+AM+ AD  FV+ AE STR GS W+F++ RS LQS MN++AQ  KK  D  ++A ++ +  MQ LQ QQQ +  LQ QLYG Q S WN G AYRIPDTN N+ G+YQQG+ NLQ+SCVPDEY+ MLG  GFT+GVGPGNLGLS+NL++
Sbjct:   87 ALEEFAKSALDAQGDSSAASTYERKLEELEAVLDASLQVIYLRQLALLREKALQTYRANTRVTEASDYEAMLQADSQFVRGAEESTRKGSDWDFSSERSYLQSVMNDVAQTRKKLIDVQMKATEKQNVIMQVLQQQQQIIQQLQMQLYG-QTSPWNVGMAYRIPDTNFNVQGSYQQGRTNLQLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSV 301
[Close]
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Match: A0A7S1VKU2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKU2_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.480e-69
Identity = 123/216 (56.94%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:  141 ALERFSTEAADTENDPAKESVFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVGADQWFVKEAEASTRAGSTWEFAAVRSSLQSAMNEIAQRGKKASDTAVRAAQQMSTAMQYLQMQQQQLAALQQQLYGGQASAWNFGAAYRIPDTNINLSGTYQQGKANLQMSCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLNI 788
            ALE F+T A   +   ++E V+D+K+EELE SLD PLQ++Y++QLTLLR++AL+RY++ +K SE S++ A++ A++ F ++AEASTR GSTW+F+A RS L S MN IA+  K +    +  +Q+  TAMQ LQ QQQ +  LQ QLYG Q S WN G AYRIPDTN NL G+YQQG+AN+Q+SCVPD+Y+ MLG  GFT GVGPGNLGLS+NL+I
Sbjct:   79 ALEDFATSAPQDDGSSSQE-VYDKKLEELEASLDAPLQVLYLRQLTLLRQEALERYRSASKTSEMSEHAAIMTAERQFAQQAEASTREGSTWDFSAERSYLVSVMNNIAESSKASQSNQLEWSQKHQTAMQVLQQQQQMIQQLQMQLYG-QTSPWNVGLAYRIPDTNFNLQGSYQQGRANVQLSCVPDDYAPMLGPNGFTQGVGPGNLGLSLNLSI 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67441.14350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX5_ECTSI2.080e-12790.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM6_9STRA5.410e-9766.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V2EIW0_9STRA1.530e-7457.87Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B7G8P6_PHATC3.580e-7454.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8CCD1_THAPS5.160e-7457.87Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9WU24_9STRA6.840e-7156.94Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1H297_9STRA8.790e-7160.41Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3P9Q4_9STRA5.490e-7051.04Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4J3B5_9STRA9.750e-7056.02Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1VKU2_9STRA1.480e-6956.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67441contigH-elongata_contig67441:153..2999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons7
Model size788
Cds size102
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.1878467-UTR-H-elongata_contig67441:152..2541622931065.1878467-UTR-H-elongata_contig67441:152..254Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 153..254 -
1691679683.5877633-UTR-H-elongata_contig67441:152..2541691679683.5877633-UTR-H-elongata_contig67441:152..254Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 153..254 -
1622931065.1998746-UTR-H-elongata_contig67441:670..7931622931065.1998746-UTR-H-elongata_contig67441:670..793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 671..793 -
1691679683.5997944-UTR-H-elongata_contig67441:670..7931691679683.5997944-UTR-H-elongata_contig67441:670..793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 671..793 -
1622931065.2131531-UTR-H-elongata_contig67441:1036..11531622931065.2131531-UTR-H-elongata_contig67441:1036..1153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1037..1153 -
1691679683.607607-UTR-H-elongata_contig67441:1036..11531691679683.607607-UTR-H-elongata_contig67441:1036..1153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1037..1153 -
1622931065.2267306-UTR-H-elongata_contig67441:1460..15591622931065.2267306-UTR-H-elongata_contig67441:1460..1559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1461..1559 -
1691679683.6156776-UTR-H-elongata_contig67441:1460..15591691679683.6156776-UTR-H-elongata_contig67441:1460..1559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1461..1559 -
1622931065.2406688-UTR-H-elongata_contig67441:1929..20611622931065.2406688-UTR-H-elongata_contig67441:1929..2061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1930..2061 -
1691679683.624374-UTR-H-elongata_contig67441:1929..20611691679683.624374-UTR-H-elongata_contig67441:1929..2061Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 1930..2061 -
1622931065.259244-UTR-H-elongata_contig67441:2241..23161622931065.259244-UTR-H-elongata_contig67441:2241..2316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2242..2316 -
1691679683.6327245-UTR-H-elongata_contig67441:2241..23161691679683.6327245-UTR-H-elongata_contig67441:2241..2316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2242..2316 -
1622931065.2760575-UTR-H-elongata_contig67441:2859..28701622931065.2760575-UTR-H-elongata_contig67441:2859..2870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2860..2870 -
1691679683.640941-UTR-H-elongata_contig67441:2859..28701691679683.640941-UTR-H-elongata_contig67441:2859..2870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2860..2870 -
1622931065.3108597-UTR-H-elongata_contig67441:2972..29991622931065.3108597-UTR-H-elongata_contig67441:2972..2999Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2973..2999 -
1691679683.656728-UTR-H-elongata_contig67441:2972..29991691679683.656728-UTR-H-elongata_contig67441:2972..2999Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67441 2973..2999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.2932703-CDS-H-elongata_contig67441:2870..29721622931065.2932703-CDS-H-elongata_contig67441:2870..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67441 2871..2972 -
1691679683.6490266-CDS-H-elongata_contig67441:2870..29721691679683.6490266-CDS-H-elongata_contig67441:2870..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67441 2871..2972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67441.14350.1prot_H-elongata_contig67441.14350.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67441 2871..2972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67441.14350.1

>prot_H-elongata_contig67441.14350.1 ID=prot_H-elongata_contig67441.14350.1|Name=mRNA_H-elongata_contig67441.14350.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
MSEVKELQARVDAGEVCPGLGSKADSICNQART*
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mRNA from alignment at H-elongata_contig67441:153..2999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67441.14350.1 ID=mRNA_H-elongata_contig67441.14350.1|Name=mRNA_H-elongata_contig67441.14350.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2847bp|location=Sequence derived from alignment at H-elongata_contig67441:153..2999- (Himanthalia elongata Himel1 dioecious)
GTATATAGCAAAATCGCGCGGCAAGCGATGTCTGAAGTGAAGGAGCTGCA
GGCGAGAGTTGACGCGGGGGAAGTATGCCCCGGGCTCGGATCGAAGGCGG
ACAGTATCTGCAACCAGGCAAGAACATAACCAAAGAACTTGTGAAGAGTA
TTGTGGTTATTATACTTACCGTCTCAATTTCCTGCCGAAAATTCATATGA
TTGGTTGAGGACGCGGAGGCTAGAAAACTTCGCGGGTGGGTTGATCCAGT
GTTGGTTCATAGTTTTCAATGTCCAATGCATCTCCCCATTGGATGGTTGA
AGTTTGTGTGACGGAAACGACCCACCTCGGGGGTCGAATGTGGTGCTCGC
CTCTTATGCATGCGTCATTCATTGTAGTGTCGTTGCCTTGTAAGGGGTAT
CATGTAAGGGGTATCACGAAGCCTTGTTGAAAGGGAGGCGTCGTCAGGCG
CTCGACTGCTTTTTGGCTTATCAATCGAAATGCTTCATTATATAATTGTA
AAGTATTAAGAGTTTGATTCTTCACAATTGCAAGGTAACGTCTTGCGGTA
AGCTGATAGACGAAGGCATTCCTTCACTTAAAAGAGAAAAGAGGCGTAGA
AATAGGCATAGAGCGTTATAGCTTGTGGAGTCGGGCCGTAGCCTTGGAAG
CATCGCTGACATATTTTATTCTCGATTCGTCAGGCCTTGGAGCGATTCAG
CACGGAGGCAGCGGACACGGAGAACGACCCCGCAAAAGAATCGGTTTTCG
ACGAGAAGGTTGGTGGCGTGCACTACTTAAAGCTATGCTTTTCAACGTTG
CTGAACGCGATCGTGAGCTAACCTTGCCGAAAATATCGTAATCTCCTCCA
TCTTGAGTCGTGACCTATTCCACCGCCGTCCGCTTGTCATGCCAGAAGCT
ATCAACCATCCGCGTCCCCAATTATCTTGGTTTCTCAGGTAGAAGAGCTC
GAGACCTCGCTGGACCTCCCCCTCCAGCTCGTGTACATGAAGCAGCTCAC
CCTCCTGCGCGAGAAGGCTCTCCAAAGGTACAAGACACTCGCCAAGGGGA
GTGAGACGAGCGACTACCAGGTAAAAGGGCCACAGCAAGTCGAAGATTTC
AGATTTCGAATCGAATCGAACCAAAATGTGTCTCTCAAGTACCGTAACTT
GTAACAGGGGAGACGAGGAGTGAGACAGACTTCCCTTACCCTTCCGAGAG
GGGAAAATCCATCATGCATGGAGCTCGCTCCGTCCCGTTCGGTCGACGTG
GTGTTCCCCGCTTGAGCTCTTCCTTTCGCGGGCTATTTCTTCTGTGCTAT
TCGAGAGAAACGCGAAGCGCGGGCTTGGTGAACAATGCGTTGAACAGAAT
ATGTCTCAGTGGAGAAACGGGCGAGATGCGCCATAACCGTGTCCGGGGGC
GTTTTGTTTGAACCCGTTCGGTCGCGCGATTACTGCTCAGGCGATGGTAG
GGGCGGACCAGTGGTTCGTAAAGGAGGCAGAGGCCAGCACGCGGGCGGGA
TCGACGTGGGAGTTCGCCGCCGTGCGCAGCAGCCTGCAGGTAGGGGAAGG
AACGATTCCGACGCTCTCGTTGCCAAACATGTAGTTGAAGAGAAGGAGGT
GGGGGGGGAGGAGCGGGCTTGGTCGTCGTCGGAATATGGCCTTGTGACGT
CAGCTCTCGTATCTCATGTGAAATATTTCTCACGTATGAGGGGTGCGTTT
AGTTGTGCAACTACGAGTCGTCACGCTTGAAAGCCGTTTCCGCGTAGCTA
GCCCTACCTGCCTCCCTGGTTTGGGTCGATTTTTATCTGTTACAATTCAT
GAAATTCTCGGCGGATGGATCACGGTGGGGTGCCCGGGACGCACAGTCGG
CGATGAACGAGATAGCGCAGAGGGGGAAGAAGGCCTCGGACACGGCGGTT
CGAGCGGCGCAGCAAATGAGCACAGCGATGCAATACCTGCAAATGCAGCA
ACAACAACTTGCGGTAAGCGCGCGCTCTTTGATATTCGTGAAGTGTGAGG
GGGGGGATGGGGTGGAGTTGTCGTTCGTCATGGTCTTGAAATGAGAAGTT
ACAATGGATTGACGAACTCTCCCAGGCGCGCTTTTTGACTGTTGGGGTTG
TCGGTAATGTCCGTGGTGTTCTTCAAGCGACTATTTTCCCCACTTTTCAA
GCAGCGGCAGTTGGAGTCGCCACGTTTCAAACGGTGGCGGTTTGGTGCTC
TCGCAGGCGCTACAACAACAGCTGTACGGGGGACAGGCATCGGCGTGGAA
CTTCGGAGCCGCGTACCGCATCCCTGACACCAACATAAACCTGTCGGGCA
CGTACCAGCAGGGCAAGGCCAACCTCCAGGTACCGCTTTCAGAGCAGAGA
TAGGATGGCAAGACTCTCGTGCAAACTCTTTCTCGACTCGACTCTATCGG
CAGGCGGCGTTTTCGTTGTTCCCTTTTCGAGACGCGACGTGGTTGCGTTT
GGCTGCTCAAGGGAGCAAAGAGAGCCAACGTGTTACGTACAACCCTTGCT
GCGTAACGGATCTTATATTACCCTGCTCGGCTTTCCTCGCTCGACCGTTC
GTGTTTCTTTTTCGTCTATCTCACCCCCTTTTAATGTGTTTTCTGTTTGC
TTGTTTTTGCTGGTTTATTTTTAACCTGTTTTGTGTTTTTCTTGGTTCAT
TTTGTTTTGGGACGTTTTGTTTTGTATGCGTTTTGTGATGTTTTTTTCTT
CTTATTTTTATGTTTGTTTCTTCTTTCTTTATTTTGTTCGTACAGATGAG
CTGTGTGCCAGACGAGTACAGCTCGATGCTGGGGTCGCAGGGTTTCACTC
ATGGGGTCGGGCCAGGCAATTTGGGGCTTTCTGTCAACCTCAACATT
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Coding sequence (CDS) from alignment at H-elongata_contig67441:153..2999-

>mRNA_H-elongata_contig67441.14350.1 ID=mRNA_H-elongata_contig67441.14350.1|Name=mRNA_H-elongata_contig67441.14350.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig67441:153..2999- (Himanthalia elongata Himel1 dioecious)
ATGTCTGAAGTGAAGGAGCTGCAGGCGAGAGTTGACGCGGGGGAAGTATG
CCCCGGGCTCGGATCGAAGGCGGACAGTATCTGCAACCAGGCAAGAACAT
AAATGTCTGAAGTGAAGGAGCTGCAGGCGAGAGTTGACGCGGGGGAAGTA
TGCCCCGGGCTCGGATCGAAGGCGGACAGTATCTGCAACCAGGCAAGAAC
ATAA
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