mRNA_H-elongata_contig66898.14291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66898.14291.1
Unique NamemRNA_H-elongata_contig66898.14291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.410e-11
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query:  196 IRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEAP 333
            +R+KKS+RRSR KG  TGE+K V RRR+LKQLLIRGDNVVM+WEAP
Sbjct:  604 VRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAP 649          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  196 IRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEAP 333
            +R+KKS+RRSR KG  TGE K V RRR+LKQLLIRGDNVVM+WEAP
Sbjct:  606 VRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAP 651          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR)

HSP 1 Score: 65.1 bits (157), Expect = 4.440e-10
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
            R   S+RGTCSG ++AFDKHMN++L+DV +D+  L      T  R  R     K   SD      +     SRR+RR  A  G      RR ++KQL IRGDNVV V
Sbjct:  203 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFIPL-----NTHERLLREVREDKRIASD-----AVFSAADSRRNRRVLASAGGT----RREYVKQLFIRGDNVVSV 295          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A329SG82_9STRA (Sm domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SG82_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.540e-10
Identity = 45/107 (42.06%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
            R   S+RGTCSG ++AFDKHMN++L+DV +++  L      T  R  R    GK   SD      +      RR+RR  A  G      RR ++KQL IRGDNVV V
Sbjct:  207 RRINSVRGTCSGFLKAFDKHMNLVLLDVTQEFISL-----NTHERLLREVREGKRPASD-----AVFSAADRRRNRRVLASAGGT----RREYVKQLFIRGDNVVSV 299          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: D0MT91_PHYIT (Sm domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT91_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-9
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEA 330
            R   S+RGTCSG ++AFDKHMN++L+DV +D+  L      T  R  R     K   SD      +      RR+RR  A  G      RR ++KQL IRGDNVV V  A
Sbjct:  188 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFIPL-----STHERLLRQVREDKRPVSD-----AVFSAADQRRNRRVFASAGGT----RREYVKQLFIRGDNVVSVSAA 283          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.410e-9
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
            R   S+RGTC+G ++AFDKHMN++L+DV ++Y  L      T  R  R    GK   SD      I    + RR+RR  A  G  +    R + KQ  IRGDNVV V
Sbjct:  104 RRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEYVPLT-----THERLLRELREGKRVSSD-----AIFSATNPRRNRRLFANAGGTQ----RDYAKQFFIRGDNVVSV 196          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.070e-9
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEA 330
            R   SIRGTC+G ++AFDKHMN++L+DV E Y  + P   E   +  R    G+ AP+D    +               A  G  ++   R+  KQL IRGDNVVMV+EA
Sbjct:  212 RRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY--VTP---EAHAQRLRDVRDGRLAPNDALFSV---------------AAPGRNRRFTSRQHAKQLFIRGDNVVMVFEA 301          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.020e-9
Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
            R   S+RGTCSG ++AFDKHMN++L+DV  D+         T  R  R    GK A SD      +      RR+ R  A  G  +    R ++KQL IRGDNVV V
Sbjct:  207 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF-----NTHERLLREVREGKRAASD-----AVFSAADRRRNHRVLANAGGTQ----REYIKQLFIRGDNVVSV 299          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.160e-8
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   13 SIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWE 327
            S+RG C+GL++AFDKH NM++VDV E YT L                         E       +  +R         GE++Q  R+R+LKQLLIRGDNVVM WE
Sbjct:  244 SVRGVCAGLLKAFDKHFNMVIVDVTERYTPLQQXXXXXXXXXXXXXXXXXXXXXXXE-------ENPNRXXXXXXXXRGELRQ--RQRYLKQLLIRGDNVVMCWE 339          
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A225WF29_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WF29_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-8
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
            R   S+RGTCSG ++AFDKH+N++L+DV +++  L      T  +  R    GK   SD    +  RR     R+RR  A  G  +    R ++KQ+ +RGDNVV V
Sbjct:  215 RRVNSVRGTCSGFLKAFDKHLNLVLLDVTQEFVPL-----NTHEKLLREVREGKRTASDAVFSVTDRR-----RNRRVLASAGGTQ----REYIKQIFVRGDNVVSV 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE1.410e-1176.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI4.900e-1176.09Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
V9F378_PHYPR4.440e-1042.99Sm domain-containing protein n=9 Tax=Phytophthora ... [more]
A0A329SG82_9STRA8.540e-1042.06Sm domain-containing protein n=2 Tax=Phytophthora ... [more]
D0MT91_PHYIT1.080e-941.82Sm domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A662WXN3_9STRA1.410e-941.12Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A5D6YBS7_9STRA2.070e-940.00Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A2P4XRX7_9STRA3.020e-941.12Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A836CP56_9STRA1.160e-840.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A225WF29_9STRA1.520e-838.32Sm domain-containing protein n=1 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66898contigH-elongata_contig66898:197..856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog4792.ETI45954
EggNOG free text desc.LSM domain
EggNOG OGs28JKK@1,2QRZV@2759,3Q8D3@4776
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.7938554-CDS-H-elongata_contig66898:196..3741622931058.7938554-CDS-H-elongata_contig66898:196..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66898 197..374 +
1691679680.9008214-CDS-H-elongata_contig66898:196..3741691679680.9008214-CDS-H-elongata_contig66898:196..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66898 197..374 +
1622931058.8142498-CDS-H-elongata_contig66898:698..8561622931058.8142498-CDS-H-elongata_contig66898:698..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66898 699..856 +
1691679680.9102814-CDS-H-elongata_contig66898:698..8561691679680.9102814-CDS-H-elongata_contig66898:698..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66898 699..856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66898.14291.1prot_H-elongata_contig66898.14291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66898 197..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66898.14291.1

>prot_H-elongata_contig66898.14291.1 ID=prot_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSY
ASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIR
GDNVVMVWEAP*
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mRNA from alignment at H-elongata_contig66898:197..856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66898.14291.1 ID=mRNA_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig66898:197..856+ (Himanthalia elongata Himel1 dioecious)
CGGACGAACGGCAGCATTCGGGGCACCTGCTCAGGCCTGATCCGAGCCTT CGATAAGCACATGAACATGCTGCTGGTGGACGTCCGCGAAGACTACACGG TTCTTGTCCCTGACCGCGATGAGACGCCTCGCCGAGAGTGTCGGAGCTAT GCGAGCGGGAAGGATGCACCTTCAGACGGTGACGTCGGGGAAGGTTCCGA GCGAGTCGACCAAAGCTCCATCGACGGGACTGATAGCAAGGATTGCGGAG CGAATGCCTTGCGTGCGAGACGCATCAATGTCGTGCGTGGCTGTAGTTCA GACAGCCTTGTAGATGCAGCAGTAGACTCTAGGAGTCTTTCTCCTCGAGG TCAATTGACCATGTTAGAAAAAAGAGGCAGCGGCGACAGCGGGAGGACTG TCGAAAACGACGAGCGCCGCGTTCAGGTCGATCTCGACCGAGACCAGGCC GGTGAAGGCAAAACCTCTCCGACAGAGCCTTCCGTGGATTGTGGGGTCAA AGACGAGCGTGGCATGATTATACGGAGAAAAAAAAGCTCGAGAAGATCTC GGCGAAAGGGAGCCCGAACCGGTGAAGTGAAGCAGGTTAGGCGACGGCGT TTCTTGAAACAGCTGTTGATCCGAGGGGACAACGTGGTGATGGTCTGGGA GGCGCCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig66898:197..856+

>mRNA_H-elongata_contig66898.14291.1 ID=mRNA_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig66898:197..856+ (Himanthalia elongata Himel1 dioecious)
CGGACGAACGGCAGCATTCGGGGCACCTGCTCAGGCCTGATCCGAGCCTT
CGATAAGCACATGAACATGCTGCTGGTGGACGTCCGCGAAGACTACACGG
TTCTTGTCCCTGACCGCGATGAGACGCCTCGCCGAGAGTGTCGGAGCTAT
GCGAGCGGGAAGGATGCACCTTCAGACGCGGACGAACGGCAGCATTCGGG
GCACCTGCTCAGGCCTGATCCGAGCCTTCGATAAGCACATGAACATGCTG
CTGGTGGACGTCCGCGAAGACTACACGGTTCTTGTCCCTGACCGCGATGA
GACGCCTCGCCGAGAGTGTCGGAGCTATGCGAGCGGGAAGGATGCACCTT
CAGACGACGAGCGTGGCATGATTATACGGAGAAAAAAAAGCTCGAGAAGA
TCTCGGCGAAAGGGAGCCCGAACCGGTGAAGTGAAGCAGGTTAGGCGACG
GCGTTTCTTGAAACAGCTGTTGATCCGAGGGGACAACGTGGTGATGGTCT
GGGAGGCGCCCTAGACGAGCGTGGCATGATTATACGGAGAAAAAAAAGCT
CGAGAAGATCTCGGCGAAAGGGAGCCCGAACCGGTGAAGTGAAGCAGGTT
AGGCGACGGCGTTTCTTGAAACAGCTGTTGATCCGAGGGGACAACGTGGT
GATGGTCTGGGAGGCGCCCTAG
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