mRNA_H-elongata_contig66898.14291.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.410e-11 Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 196 IRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEAP 333
+R+KKS+RRSR KG TGE+K V RRR+LKQLLIRGDNVVM+WEAP
Sbjct: 604 VRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAP 649
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 4.900e-11 Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query: 196 IRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEAP 333
+R+KKS+RRSR KG TGE K V RRR+LKQLLIRGDNVVM+WEAP
Sbjct: 606 VRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAP 651
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR) HSP 1 Score: 65.1 bits (157), Expect = 4.440e-10 Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
R S+RGTCSG ++AFDKHMN++L+DV +D+ L T R R K SD + SRR+RR A G RR ++KQL IRGDNVV V
Sbjct: 203 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFIPL-----NTHERLLREVREDKRIASD-----AVFSAADSRRNRRVLASAGGT----RREYVKQLFIRGDNVVSV 295
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A329SG82_9STRA (Sm domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SG82_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 8.540e-10 Identity = 45/107 (42.06%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
R S+RGTCSG ++AFDKHMN++L+DV +++ L T R R GK SD + RR+RR A G RR ++KQL IRGDNVV V
Sbjct: 207 RRINSVRGTCSGFLKAFDKHMNLVLLDVTQEFISL-----NTHERLLREVREGKRPASD-----AVFSAADRRRNRRVLASAGGT----RREYVKQLFIRGDNVVSV 299
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: D0MT91_PHYIT (Sm domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT91_PHYIT) HSP 1 Score: 63.9 bits (154), Expect = 1.080e-9 Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEA 330
R S+RGTCSG ++AFDKHMN++L+DV +D+ L T R R K SD + RR+RR A G RR ++KQL IRGDNVV V A
Sbjct: 188 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFIPL-----STHERLLRQVREDKRPVSD-----AVFSAADQRRNRRVFASAGGT----RREYVKQLFIRGDNVVSVSAA 283
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.410e-9 Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
R S+RGTC+G ++AFDKHMN++L+DV ++Y L T R R GK SD I + RR+RR A G + R + KQ IRGDNVV V
Sbjct: 104 RRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEYVPLT-----THERLLRELREGKRVSSD-----AIFSATNPRRNRRLFANAGGTQ----RDYAKQFFIRGDNVVSV 196
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.070e-9 Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWEA 330
R SIRGTC+G ++AFDKHMN++L+DV E Y + P E + R G+ AP+D + A G ++ R+ KQL IRGDNVVMV+EA
Sbjct: 212 RRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY--VTP---EAHAQRLRDVRDGRLAPNDALFSV---------------AAPGRNRRFTSRQHAKQLFIRGDNVVMVFEA 301
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.020e-9 Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
R S+RGTCSG ++AFDKHMN++L+DV D+ T R R GK A SD + RR+ R A G + R ++KQL IRGDNVV V
Sbjct: 207 RRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF-----NTHERLLREVREGKRAASD-----AVFSAADRRRNHRVLANAGGTQ----REYIKQLFIRGDNVVSV 299
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.160e-8 Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 13 SIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMVWE 327
S+RG C+GL++AFDKH NM++VDV E YT L E + +R GE++Q R+R+LKQLLIRGDNVVM WE
Sbjct: 244 SVRGVCAGLLKAFDKHFNMVIVDVTERYTPLQQXXXXXXXXXXXXXXXXXXXXXXXE-------ENPNRXXXXXXXXRGELRQ--RQRYLKQLLIRGDNVVMCWE 339
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Match: A0A225WF29_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WF29_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.520e-8 Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 1 RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYASGKDAPSDDERGMIIRRKKSSRRSRRKGARTGEVKQVRRRRFLKQLLIRGDNVVMV 321
R S+RGTCSG ++AFDKH+N++L+DV +++ L T + R GK SD + RR R+RR A G + R ++KQ+ +RGDNVV V
Sbjct: 215 RRVNSVRGTCSGFLKAFDKHLNLVLLDVTQEFVPL-----NTHEKLLREVREGKRTASDAVFSVTDRR-----RNRRVLASAGGTQ----REYIKQIFVRGDNVVSV 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66898.14291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66898.14291.1 >prot_H-elongata_contig66898.14291.1 ID=prot_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp RTNGSIRGTCSGLIRAFDKHMNMLLVDVREDYTVLVPDRDETPRRECRSYback to top mRNA from alignment at H-elongata_contig66898:197..856+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66898.14291.1 ID=mRNA_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig66898:197..856+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66898:197..856+ >mRNA_H-elongata_contig66898.14291.1 ID=mRNA_H-elongata_contig66898.14291.1|Name=mRNA_H-elongata_contig66898.14291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig66898:197..856+ (Himanthalia elongata Himel1 dioecious)back to top |