mRNA_H-elongata_contig66852.14286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66852.14286.1
Unique NamemRNA_H-elongata_contig66852.14286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.400e-39
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  193 SFFEALPAEEVEQRLKAFHKGPLHEDFHLCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            +FF ALPAE+VEQRLKA H GP HE FHLCCVC+DRPRDAALIHGKT+HQACCYDCA+ELFERGLPCP CRQ IAHVVKNF+
Sbjct:  536 AFF-ALPAEDVEQRLKAIHAGPSHEGFHLCCVCLDRPRDAALIHGKTAHQACCYDCAVELFERGLPCPYCRQPIAHVVKNFV 616
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: R7V6A3_CAPTE (RING-type domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V6A3_CAPTE)

HSP 1 Score: 79.3 bits (194), Expect = 2.400e-15
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  280 CCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            C +CM +P++A++IHGKT HQ CCY CA  L  RG PCP CR+ I  V+KNF+
Sbjct:    1 CVICMQKPKEASIIHGKTGHQICCYVCAKRLRRRGKPCPVCRRPIQKVIKNFI 53
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A8J1TC64_OWEFU (E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TC64_OWEFU)

HSP 1 Score: 81.6 bits (200), Expect = 3.400e-13
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  277 LCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            +C +C+ +P+DA++IHGKT HQ CCY CA +L +R  PCP CR+ I +V+KNFL
Sbjct:  857 VCAICLTKPKDASIIHGKTGHQVCCYKCAKKLLKRRKPCPVCRRPIENVIKNFL 910
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A1S3KAV1_LINUN (E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KAV1_LINUN)

HSP 1 Score: 77.4 bits (189), Expect = 8.390e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  256 PLHEDFH-LCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            PL  +++ LC +CM +P++A++IHGKT HQ  CY CA  L   G PCP CR+ I  V+KNFL
Sbjct:  843 PLGNEYNDLCVICMSKPKEASIIHGKTGHQVTCYSCAKRLKWSGRPCPICRRPIQKVIKNFL 904
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: UPI00106DACC5 (uncharacterized protein LOC114516926 isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DACC5)

HSP 1 Score: 76.6 bits (187), Expect = 8.450e-12
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:  211 PAEEVEQRLKAFHKGPLHEDFHLCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNF 435
            P+EEV+  + A       +D   C +C++RP+DA ++HG T H  CC  CA ELF RG  CP CR  I  V+K +
Sbjct:  339 PSEEVDNNVGATGPPGAQDDVGNCVICLERPKDATIVHGTTGHVCCCTYCASELFRRGENCPICRAPIQTVIKQY 413
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A6A0H0E1_HYAAZ (RING-type domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H0E1_HYAAZ)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  274 HLCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            +LC +C DRP+DAA+IHGK SHQA CY CA  LF R   CP CR+ I  + KN +
Sbjct:  727 NLCIMCQDRPKDAAIIHGKISHQATCYRCAKTLFNRKQRCPVCRRKILRIAKNII 781
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A8B7NGC1_HYAAZ (platelet binding protein GspB-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NGC1_HYAAZ)

HSP 1 Score: 75.9 bits (185), Expect = 3.020e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  274 HLCCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            +LC +C DRP+DAA+IHGK SHQA CY CA  LF R   CP CR+ I  + KN +
Sbjct: 1364 NLCIMCQDRPKDAAIIHGKISHQATCYRCAKTLFNRKQRCPVCRRKILRIAKNII 1418
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A7S4NCY2_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4NCY2_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.230e-9
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  280 CCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNF 435
            CC+CM+ PR+A+++HG+T+H  CC +CA  L  +G  CP C   I  VV+N+
Sbjct:  155 CCICMEAPRNASVVHGETAHICCCLECARTLKAKGHTCPICNDPIDAVVRNY 206
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BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: A0A851F4Y4_PITSO (Protein Mdm4 (Fragment) n=1 Tax=Pitta sordida TaxID=9163 RepID=A0A851F4Y4_PITSO)

HSP 1 Score: 67.8 bits (164), Expect = 8.380e-9
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  280 CCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL 438
            CCVC+ RPRD  ++HG+T+H   CY CA  L ++  PCP CR+ I  V++ F+
Sbjct:  432 CCVCLHRPRDGNIVHGRTAHLVACYRCARMLKKKKSPCPVCRKEIGMVIRIFM 484
[Close]
BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Match: UPI001F034E19 (E3 ubiquitin-protein ligase Mdm2-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F034E19)

HSP 1 Score: 65.5 bits (158), Expect = 3.160e-8
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  280 CCVCMDRPRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNF 435
            C +C++RP+DA ++HG T H  CC  CAL L+     CP CR+ I  ++K +
Sbjct:  293 CVICLERPKDATIVHGDTGHVCCCMTCALHLYRTRSRCPICREPIDRIIKQY 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66852.14286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE4.400e-3984.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7V6A3_CAPTE2.400e-1556.60RING-type domain-containing protein (Fragment) n=1... [more]
A0A8J1TC64_OWEFU3.400e-1355.56E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Owenia fu... [more]
A0A1S3KAV1_LINUN8.390e-1251.61E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Lingula u... [more]
UPI00106DACC58.450e-1242.67uncharacterized protein LOC114516926 isoform X1 n=... [more]
A0A6A0H0E1_HYAAZ2.540e-1156.36RING-type domain-containing protein n=1 Tax=Hyalel... [more]
A0A8B7NGC1_HYAAZ3.020e-1156.36platelet binding protein GspB-like n=1 Tax=Hyalell... [more]
A0A7S4NCY2_9EUKA3.230e-946.15Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]
A0A851F4Y4_PITSO8.380e-947.17Protein Mdm4 (Fragment) n=1 Tax=Pitta sordida TaxI... [more]
UPI001F034E193.160e-842.31E3 ubiquitin-protein ligase Mdm2-like isoform X1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66852contigH-elongata_contig66852:2132..3231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.3
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog10224.XP_006821905.1
Preferred nameMDM4
KEGG koko:K06643,ko:K10127
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
GOsGO:0000075,GO:0000077,GO:0000122,GO:0000278,GO:0001666,GO:0002027,GO:0003007,GO:0003170,GO:0003171,GO:0003179,GO:0003181,GO:0003197,GO:0003203,GO:0003205,GO:0003230,GO:0003231,GO:0003279,GO:0003281,GO:0003283,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007507,GO:0008016,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008284,GO:0008285,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010948,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0031647,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033554,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042770,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045023,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0060485,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070887,GO:0071156,GO:0071158,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072132,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903507,GO:1903522,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
EggNOG free text desc.G0 to G1 transition
EggNOG OGs2C54B@1,2QQNV@2759,39R5S@33154,3BEE8@33208,3CY9Z@33213
EC2.3.2.27
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1058
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66852.14286.1prot_H-elongata_contig66852.14286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66852 2132..2572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.3196974-CDS-H-elongata_contig66852:2131..25721622931058.3196974-CDS-H-elongata_contig66852:2131..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66852 2132..2572 +
1691679680.7188733-CDS-H-elongata_contig66852:2131..25721691679680.7188733-CDS-H-elongata_contig66852:2131..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66852 2132..2572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.3344324-UTR-H-elongata_contig66852:2572..27661622931058.3344324-UTR-H-elongata_contig66852:2572..2766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66852 2573..2766 +
1691679680.7359183-UTR-H-elongata_contig66852:2572..27661691679680.7359183-UTR-H-elongata_contig66852:2572..2766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66852 2573..2766 +
1622931058.3495085-UTR-H-elongata_contig66852:2809..32311622931058.3495085-UTR-H-elongata_contig66852:2809..3231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66852 2810..3231 +
1691679680.7488906-UTR-H-elongata_contig66852:2809..32311691679680.7488906-UTR-H-elongata_contig66852:2809..3231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66852 2810..3231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66852.14286.1

>prot_H-elongata_contig66852.14286.1 ID=prot_H-elongata_contig66852.14286.1|Name=mRNA_H-elongata_contig66852.14286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
PVGSWSGSSGGGSSVSTGSAVGGSLPRVEARPPPRKRRSFGGSDKLDSNG
EDPPEASSPDHGSASFFEALPAEEVEQRLKAFHKGPLHEDFHLCCVCMDR
PRDAALIHGKTSHQACCYDCALELFERGLPCPCCRQSIAHVVKNFL*
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mRNA from alignment at H-elongata_contig66852:2132..3231+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66852.14286.1 ID=mRNA_H-elongata_contig66852.14286.1|Name=mRNA_H-elongata_contig66852.14286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig66852:2132..3231+ (Himanthalia elongata Himel1 dioecious)
CCGGTGGGTAGCTGGAGCGGAAGCAGCGGAGGAGGGTCATCGGTGTCGAC
GGGGTCGGCGGTGGGGGGGAGCTTGCCGAGGGTCGAGGCGCGACCCCCCC
CGCGGAAGCGCAGGAGCTTCGGTGGTTCGGATAAACTAGACAGCAATGGC
GAAGATCCCCCCGAGGCTTCTTCGCCTGACCACGGGAGCGCGTCGTTCTT
CGAAGCTCTACCGGCAGAGGAAGTCGAGCAGCGGTTGAAGGCCTTTCACA
AGGGACCGTTACACGAAGATTTCCACTTGTGCTGTGTGTGCATGGATCGT
CCACGCGACGCCGCGCTCATTCATGGGAAGACTTCGCACCAGGCTTGCTG
CTACGACTGCGCATTGGAGCTGTTCGAGCGCGGCCTTCCGTGCCCGTGCT
GTCGCCAATCCATTGCCCACGTTGTGAAGAATTTCCTCTGAGCGTGATGC
CAGGGAGGTGCGATTCTTCTTGGGGAAGGGGATGGGGCGAGGGAACTCTT
GTTTACCCCCCTGTCATTTCGCTGTTTAGCGTGTTGGAGGAAGCCTTCGC
TTGTCTTGCAGGTCTCCAGATTTTCCCCGCTATATAGAAGTGCTATTGAA
AAGGAAGGGGCGGGGAAGGAGCATGTATTGAGGGCTGTTTGTTTGTTTAT
TTGTTAGTTTGATTGATTAATTTCATATTTCATCACAAGTGTGTATTGTG
TGTGTGTCTTTTGTGGATATGCACGGAAGCTTGTTCGAAGGGGATGGGGG
GGGGGGGACCGCTCGCCCTCTGGAGACGGGAGAAAAGACCAGCTAAAGAA
ACAAAAACGAGGACCAAAAACTTATATTTTTGCAGTGTAAACTTGGATCG
AACAATTGATCGAACCCCCTCCCCCCATTCCCGTCTCCCCGCCGTGCTCT
GCCAGCGCTGCGCGTTGTACTCTAATGAGCGCCGTTTTCGGACAGTGATG
CTTATTAATTATTTAACAGTGCATAAATGCAGTACAGTGGCGTGGAAGAA
GCGATCGATGCCGTTCGTATTTTCTTTGCCCTTCCTTCGACCGACCCTAT
GATTAGTACGTACCGTATCCAGCTATATGTCCGTTTCTGTACTTCGTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig66852:2132..3231+

>mRNA_H-elongata_contig66852.14286.1 ID=mRNA_H-elongata_contig66852.14286.1|Name=mRNA_H-elongata_contig66852.14286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig66852:2132..3231+ (Himanthalia elongata Himel1 dioecious)
CCGGTGGGTAGCTGGAGCGGAAGCAGCGGAGGAGGGTCATCGGTGTCGAC
GGGGTCGGCGGTGGGGGGGAGCTTGCCGAGGGTCGAGGCGCGACCCCCCC
CGCGGAAGCGCAGGAGCTTCGGTGGTTCGGATAAACTAGACAGCAATGGC
GAAGATCCCCCCGAGGCTTCTTCGCCTGACCACGGGAGCGCGTCGTTCTT
CGAAGCTCTACCGGCAGAGGAAGTCGAGCAGCGGTTGAAGGCCTTTCACA
AGGGACCGTTACACGAAGATTTCCACTTGTGCTGTGTGTGCATGGATCGT
CCACGCGACGCCGCGCTCATTCATGGGAAGACTTCGCACCAGGCTTGCTG
CTACGACTGCGCATTGGAGCTGTTCGAGCGCGGCCTTCCGTGCCCGTGCT
GTCGCCAATCCATTGCCCACGTTGTGAAGAATTTCCTCTGACCGGTGGGT
AGCTGGAGCGGAAGCAGCGGAGGAGGGTCATCGGTGTCGACGGGGTCGGC
GGTGGGGGGGAGCTTGCCGAGGGTCGAGGCGCGACCCCCCCCGCGGAAGC
GCAGGAGCTTCGGTGGTTCGGATAAACTAGACAGCAATGGCGAAGATCCC
CCCGAGGCTTCTTCGCCTGACCACGGGAGCGCGTCGTTCTTCGAAGCTCT
ACCGGCAGAGGAAGTCGAGCAGCGGTTGAAGGCCTTTCACAAGGGACCGT
TACACGAAGATTTCCACTTGTGCTGTGTGTGCATGGATCGTCCACGCGAC
GCCGCGCTCATTCATGGGAAGACTTCGCACCAGGCTTGCTGCTACGACTG
CGCATTGGAGCTGTTCGAGCGCGGCCTTCCGTGCCCGTGCTGTCGCCAAT
CCATTGCCCACGTTGTGAAGAATTTCCTCTGA
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