mRNA_H-elongata_contig66583.14262.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: D7FV46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV46_ECTSI) HSP 1 Score: 266 bits (679), Expect = 5.110e-85 Identity = 151/227 (66.52%), Postives = 167/227 (73.57%), Query Frame = 1
Query: 31 LLAALCLAVVFAFVLRRT---TVVIPSGPTPAAQSTATEDVSTLGLAQRLLRGEGWEYFS---EEESSLTRSIRRLKGGISSPAPPGHPFFSDDESSPVMESFPEEPG------HGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
+LA LCL V+ VL RT V + G A E ST A+R LRGEGW S ++ S L+R+ RRL ++ APPGHP+F+DDE + + E+ HGH WHKPLHPIDGWD+ GVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHP ADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct: 1 MLAGLCLLVLSLVVLARTGDDNVFVSFGVGGA------EKESTGATARRWLRGEGWGGDSAGRDQGSVLSRAFRRL---ATARAPPGHPYFTDDEQAVIFEAXXXXXXXXXHNHHGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 218
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A6H5JFJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE) HSP 1 Score: 240 bits (612), Expect = 3.800e-73 Identity = 137/221 (61.99%), Postives = 156/221 (70.59%), Query Frame = 1
Query: 10 SSFRRPVLLAALCLAVVFAFVLRRT---TVVIPSGPTPAAQSTATEDVSTLGLAQRLLRGEGWEYFSE---EESSLTRSIRRLKGGISSPAPPGHPFFSDDESSPVMESFPEEPGH------GHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLT 636
S +RRP LLA LCL+V+ V RT + + G A E +T A+R LRGEGW S +ES L+R+ RRL ++ APPG P+F+DDE + + E+ GH WHKPLHPIDGWD+ VGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLN+SKRHP ADRPLVDWDLILVMEPLT
Sbjct: 2 SRYRRPALLAGLCLSVLSLVVRTRTGDDNIFLSFGVGGA------EKENTGATARRWLRGEGWGDHSAGKGQESVLSRAFRRL---ATARAPPGQPYFTDDEQAVIFEAXXXXXXXXXXXXXGHYWHKPLHPIDGWDVTAVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNISKRHPAADRPLVDWDLILVMEPLT 213
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7R9YCS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCS1_9STRA) HSP 1 Score: 169 bits (429), Expect = 4.060e-49 Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 1
Query: 352 HKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
HK L P+ D+IG+ LA IGLMIAA GGIGGGGILVPLYILVL F PK AIPLSNITIFGGAITNT+LN KRHP ADRPLVDWDLILVMEPLTI GALVGSF+NK+
Sbjct: 52 HKDLFPLSARDVIGMLLAIIGLMIAAGGGIGGGGILVPLYILVLDFHPKFAIPLSNITIFGGAITNTILNSPKRHPLADRPLVDWDLILVMEPLTIAGALVGSFLNKI 159
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A6V1T5B1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T5B1_HETAK) HSP 1 Score: 177 bits (449), Expect = 4.520e-49 Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 262 APPGHPFFSDDESSPVMESFPEEPGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
A P P S+D M+ +P HK L P+DG D +GV L+ IGLMIAA GGIGGGGILVPLYILVLGF PK+AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSF+NKV
Sbjct: 62 AEPLIPLESEDPGFSNMDKGDYDPSA----HKDLLPLDGTDFLGVFLSSIGLMIAAGGGIGGGGILVPLYILVLGFSPKYAIPLSNITIFGGAITNTILNIPKRHPVADRPLVDWDLIMIMEPLTIAGAIAGSFVNKV 195
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.360e-48 Identity = 89/115 (77.39%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 331 PGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
PG H HK L P+D WD G+ A IGLMIAA GGIGGGGILVP+++L++ F PK+AIPLSNITIFGGAITN LNLSKRHP ADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct: 61 PGQSH--HKKLLPLDAWDKAGIFAAIIGLMIAAGGGIGGGGILVPIFVLIMRFHPKYAIPLSNITIFGGAITNVALNLSKRHPLADRPLVDWDLILVMEPLTIGGALVGSFINKV 173
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S2FP42_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FP42_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.100e-47 Identity = 88/143 (61.54%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 271 GHPFFSDDESSPVMES----FPEE-----PGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINK 672
G + DE SP +S F EE P WHK L P+D D +G+ L+C GL+IA+ GGIGGGGILVPLYILV+GF PK+AIPLSN+T+FGGA+ N N++KRHP+ADRPLVDWDLILVMEPLTI GAL+GSF+NK
Sbjct: 48 GSGSLATDEESPSKDSSESTFSEEEKEEIPDSDMHWHKKLFPLDSTDYLGIFLSCCGLIIASGGGIGGGGILVPLYILVMGFTPKYAIPLSNVTVFGGAVVNYFTNITKRHPNADRPLVDWDLILVMEPLTILGALIGSFLNK 190
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S1UW20_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW20_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.270e-47 Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1
Query: 280 FFSDDESSPVMES-----FPEEPGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINK 672
+ DDE+ ++ F EE HKPLHP+D D IG G A +GLM+AA GGIGGGGILVP YILV+GF PKHAIPLSN+T+ GGAI N++LN KRHP ADRPL+DWDLILVMEPLTI GAL+G+F+NK
Sbjct: 61 LYGDDENGRALQKEGEFVFNEE-------HKPLHPLDSTDYIGFGCAILGLMVAAGGGIGGGGILVPTYILVMGFSPKHAIPLSNVTVLGGAIANSLLNSRKRHPLADRPLIDWDLILVMEPLTIAGALIGAFLNK 189
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S3Y290_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y290_HETAK) HSP 1 Score: 166 bits (421), Expect = 3.650e-46 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 346 AWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
A HK L PI D +G+ LA IGL+IAA GGIGGGGILVPLY++VL F PK AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSFINKV
Sbjct: 76 AIHKKLFPIGLLDFLGIFLAAIGLVIAAGGGIGGGGILVPLYVMVLRFSPKFAIPLSNITIFGGAITNTILNIPKRHPHADRPLVDWDLIMIMEPLTIAGAIAGSFINKV 185
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: D8LFQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ6_ECTSI) HSP 1 Score: 161 bits (408), Expect = 5.700e-46 Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 1
Query: 379 WDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
WD+ V LA GLMIAAAGGIGGGGILVP++ILVL F PK+A+PLSNITIFGGAITNT LN+ KRHP ADRPLVDWDLILVMEPLTIGGALVGSFI KV
Sbjct: 12 WDVATVILASFGLMIAAAGGIGGGGILVPIFILVLRFGPKYAVPLSNITIFGGAITNTFLNMKKRHPLADRPLVDWDLILVMEPLTIGGALVGSFIQKV 110
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S2MC23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MC23_9STRA) HSP 1 Score: 159 bits (403), Expect = 9.660e-46 Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1
Query: 352 HKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
HKPL P+ D IG LA LM+AA GGIGGGGILVPLYIL+ F PKHAIPLSN+T+ GGAI NT+LNL KRHP DRPL+DWDLIL+MEPLTI GAL+G+ +NKV
Sbjct: 41 HKPLTPLSSTDTIGFTLATFALMLAAGGGIGGGGILVPLYILLFQFTPKHAIPLSNVTVLGGAIANTILNLRKRHPKRDRPLIDWDLILIMEPLTIAGALIGALVNKV 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66583.14262.1 >prot_H-elongata_contig66583.14262.1 ID=prot_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp MSGSSFRRPVLLAALCLAVVFAFVLRRTTVVIPSGPTPAAQSTATEDVSTback to top mRNA from alignment at H-elongata_contig66583:2255..2929- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66583.14262.1 ID=mRNA_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig66583:2255..2929- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66583:2255..2929- >mRNA_H-elongata_contig66583.14262.1 ID=mRNA_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig66583:2255..2929- (Himanthalia elongata Himel1 dioecious)back to top |