mRNA_H-elongata_contig66583.14262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66583.14262.1
Unique NamemRNA_H-elongata_contig66583.14262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: D7FV46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV46_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 5.110e-85
Identity = 151/227 (66.52%), Postives = 167/227 (73.57%), Query Frame = 1
Query:   31 LLAALCLAVVFAFVLRRT---TVVIPSGPTPAAQSTATEDVSTLGLAQRLLRGEGWEYFS---EEESSLTRSIRRLKGGISSPAPPGHPFFSDDESSPVMESFPEEPG------HGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            +LA LCL V+   VL RT    V +  G   A      E  ST   A+R LRGEGW   S   ++ S L+R+ RRL    ++ APPGHP+F+DDE + + E+            HGH WHKPLHPIDGWD+ GVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHP ADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct:    1 MLAGLCLLVLSLVVLARTGDDNVFVSFGVGGA------EKESTGATARRWLRGEGWGGDSAGRDQGSVLSRAFRRL---ATARAPPGHPYFTDDEQAVIFEAXXXXXXXXXHNHHGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 218          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A6H5JFJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 3.800e-73
Identity = 137/221 (61.99%), Postives = 156/221 (70.59%), Query Frame = 1
Query:   10 SSFRRPVLLAALCLAVVFAFVLRRT---TVVIPSGPTPAAQSTATEDVSTLGLAQRLLRGEGWEYFSE---EESSLTRSIRRLKGGISSPAPPGHPFFSDDESSPVMESFPEEPGH------GHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLT 636
            S +RRP LLA LCL+V+   V  RT    + +  G   A      E  +T   A+R LRGEGW   S    +ES L+R+ RRL    ++ APPG P+F+DDE + + E+             GH WHKPLHPIDGWD+  VGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLN+SKRHP ADRPLVDWDLILVMEPLT
Sbjct:    2 SRYRRPALLAGLCLSVLSLVVRTRTGDDNIFLSFGVGGA------EKENTGATARRWLRGEGWGDHSAGKGQESVLSRAFRRL---ATARAPPGQPYFTDDEQAVIFEAXXXXXXXXXXXXXGHYWHKPLHPIDGWDVTAVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNISKRHPAADRPLVDWDLILVMEPLT 213          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7R9YCS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCS1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.060e-49
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 1
Query:  352 HKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            HK L P+   D+IG+ LA IGLMIAA GGIGGGGILVPLYILVL F PK AIPLSNITIFGGAITNT+LN  KRHP ADRPLVDWDLILVMEPLTI GALVGSF+NK+
Sbjct:   52 HKDLFPLSARDVIGMLLAIIGLMIAAGGGIGGGGILVPLYILVLDFHPKFAIPLSNITIFGGAITNTILNSPKRHPLADRPLVDWDLILVMEPLTIAGALVGSFLNKI 159          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A6V1T5B1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T5B1_HETAK)

HSP 1 Score: 177 bits (449), Expect = 4.520e-49
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 1
Query:  262 APPGHPFFSDDESSPVMESFPEEPGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            A P  P  S+D     M+    +P      HK L P+DG D +GV L+ IGLMIAA GGIGGGGILVPLYILVLGF PK+AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSF+NKV
Sbjct:   62 AEPLIPLESEDPGFSNMDKGDYDPSA----HKDLLPLDGTDFLGVFLSSIGLMIAAGGGIGGGGILVPLYILVLGFSPKYAIPLSNITIFGGAITNTILNIPKRHPVADRPLVDWDLIMIMEPLTIAGAIAGSFVNKV 195          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.360e-48
Identity = 89/115 (77.39%), Postives = 97/115 (84.35%), Query Frame = 1
Query:  331 PGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            PG  H  HK L P+D WD  G+  A IGLMIAA GGIGGGGILVP+++L++ F PK+AIPLSNITIFGGAITN  LNLSKRHP ADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct:   61 PGQSH--HKKLLPLDAWDKAGIFAAIIGLMIAAGGGIGGGGILVPIFVLIMRFHPKYAIPLSNITIFGGAITNVALNLSKRHPLADRPLVDWDLILVMEPLTIGGALVGSFINKV 173          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S2FP42_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FP42_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.100e-47
Identity = 88/143 (61.54%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  271 GHPFFSDDESSPVMES----FPEE-----PGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINK 672
            G    + DE SP  +S    F EE     P     WHK L P+D  D +G+ L+C GL+IA+ GGIGGGGILVPLYILV+GF PK+AIPLSN+T+FGGA+ N   N++KRHP+ADRPLVDWDLILVMEPLTI GAL+GSF+NK
Sbjct:   48 GSGSLATDEESPSKDSSESTFSEEEKEEIPDSDMHWHKKLFPLDSTDYLGIFLSCCGLIIASGGGIGGGGILVPLYILVMGFTPKYAIPLSNVTVFGGAVVNYFTNITKRHPNADRPLVDWDLILVMEPLTILGALIGSFLNK 190          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S1UW20_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW20_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.270e-47
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1
Query:  280 FFSDDESSPVMES-----FPEEPGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINK 672
             + DDE+   ++      F EE       HKPLHP+D  D IG G A +GLM+AA GGIGGGGILVP YILV+GF PKHAIPLSN+T+ GGAI N++LN  KRHP ADRPL+DWDLILVMEPLTI GAL+G+F+NK
Sbjct:   61 LYGDDENGRALQKEGEFVFNEE-------HKPLHPLDSTDYIGFGCAILGLMVAAGGGIGGGGILVPTYILVMGFSPKHAIPLSNVTVLGGAIANSLLNSRKRHPLADRPLIDWDLILVMEPLTIAGALIGAFLNK 189          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S3Y290_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y290_HETAK)

HSP 1 Score: 166 bits (421), Expect = 3.650e-46
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
Query:  346 AWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            A HK L PI   D +G+ LA IGL+IAA GGIGGGGILVPLY++VL F PK AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSFINKV
Sbjct:   76 AIHKKLFPIGLLDFLGIFLAAIGLVIAAGGGIGGGGILVPLYVMVLRFSPKFAIPLSNITIFGGAITNTILNIPKRHPHADRPLVDWDLIMIMEPLTIAGAIAGSFINKV 185          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: D8LFQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ6_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 5.700e-46
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 1
Query:  379 WDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            WD+  V LA  GLMIAAAGGIGGGGILVP++ILVL F PK+A+PLSNITIFGGAITNT LN+ KRHP ADRPLVDWDLILVMEPLTIGGALVGSFI KV
Sbjct:   12 WDVATVILASFGLMIAAAGGIGGGGILVPIFILVLRFGPKYAVPLSNITIFGGAITNTFLNMKKRHPLADRPLVDWDLILVMEPLTIGGALVGSFIQKV 110          
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Match: A0A7S2MC23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MC23_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.660e-46
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1
Query:  352 HKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLVDWDLILVMEPLTIGGALVGSFINKV 675
            HKPL P+   D IG  LA   LM+AA GGIGGGGILVPLYIL+  F PKHAIPLSN+T+ GGAI NT+LNL KRHP  DRPL+DWDLIL+MEPLTI GAL+G+ +NKV
Sbjct:   41 HKPLTPLSSTDTIGFTLATFALMLAAGGGIGGGGILVPLYILLFQFTPKHAIPLSNVTVLGGAIANTILNLRKRHPKRDRPLIDWDLILIMEPLTIAGALIGALVNKV 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66583.14262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV46_ECTSI5.110e-8566.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFJ9_9PHAE3.800e-7361.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YCS1_9STRA4.060e-4980.56Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A6V1T5B1_HETAK4.520e-4967.39Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835ZGS5_9STRA1.360e-4877.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FP42_9STRA1.100e-4761.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1UW20_9STRA1.270e-4763.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3Y290_HETAK3.650e-4675.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LFQ6_ECTSI5.700e-4682.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2MC23_9STRA9.660e-4670.37Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66583contigH-elongata_contig66583:2255..2929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue4.2e-68
Seed eggNOG ortholog2880.D7FV46
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs28PZK@1,2QWNB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size675
Cds size675
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.9208527-CDS-H-elongata_contig66583:2254..29291622931055.9208527-CDS-H-elongata_contig66583:2254..2929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66583 2255..2929 -
1691679679.9438388-CDS-H-elongata_contig66583:2254..29291691679679.9438388-CDS-H-elongata_contig66583:2254..2929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66583 2255..2929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66583.14262.1prot_H-elongata_contig66583.14262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66583 2255..2929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66583.14262.1

>prot_H-elongata_contig66583.14262.1 ID=prot_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
MSGSSFRRPVLLAALCLAVVFAFVLRRTTVVIPSGPTPAAQSTATEDVST
LGLAQRLLRGEGWEYFSEEESSLTRSIRRLKGGISSPAPPGHPFFSDDES
SPVMESFPEEPGHGHAWHKPLHPIDGWDIIGVGLACIGLMIAAAGGIGGG
GILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPDADRPLV
DWDLILVMEPLTIGGALVGSFINKV
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mRNA from alignment at H-elongata_contig66583:2255..2929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66583.14262.1 ID=mRNA_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig66583:2255..2929- (Himanthalia elongata Himel1 dioecious)
ATGTCGGGTTCGAGTTTTCGACGGCCGGTTCTGTTGGCTGCGCTTTGCTT GGCAGTGGTTTTCGCGTTTGTTCTAAGACGAACCACCGTCGTCATTCCCT CTGGACCGACTCCCGCCGCACAAAGCACTGCGACGGAGGATGTGTCGACG TTAGGGCTAGCGCAGCGATTACTCCGTGGTGAGGGATGGGAATATTTTTC TGAAGAAGAGTCTTCATTGACGCGATCGATTCGACGGCTCAAGGGTGGTA TTTCATCTCCCGCTCCTCCGGGGCATCCTTTCTTCTCAGATGACGAGTCT TCGCCCGTGATGGAATCGTTCCCGGAAGAACCTGGACATGGGCACGCTTG GCACAAGCCTCTCCACCCCATCGACGGGTGGGACATCATCGGCGTTGGTC TTGCATGCATAGGTCTCATGATCGCTGCCGCTGGCGGGATCGGAGGGGGG GGTATTCTGGTGCCCCTATATATCCTCGTTTTGGGTTTTGATCCGAAGCA CGCTATTCCGCTTTCGAACATCACCATCTTTGGAGGTGCAATCACGAACA CTGTCCTAAATCTCAGTAAGAGACACCCCGATGCCGATCGACCCCTAGTC GACTGGGACCTGATCCTCGTCATGGAGCCGCTTACGATCGGTGGCGCGCT AGTGGGAAGCTTTATTAACAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig66583:2255..2929-

>mRNA_H-elongata_contig66583.14262.1 ID=mRNA_H-elongata_contig66583.14262.1|Name=mRNA_H-elongata_contig66583.14262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig66583:2255..2929- (Himanthalia elongata Himel1 dioecious)
ATGTCGGGTTCGAGTTTTCGACGGCCGGTTCTGTTGGCTGCGCTTTGCTT
GGCAGTGGTTTTCGCGTTTGTTCTAAGACGAACCACCGTCGTCATTCCCT
CTGGACCGACTCCCGCCGCACAAAGCACTGCGACGGAGGATGTGTCGACG
TTAGGGCTAGCGCAGCGATTACTCCGTGGTGAGGGATGGGAATATTTTTC
TGAAGAAGAGTCTTCATTGACGCGATCGATTCGACGGCTCAAGGGTGGTA
TTTCATCTCCCGCTCCTCCGGGGCATCCTTTCTTCTCAGATGACGAGTCT
TCGCCCGTGATGGAATCGTTCCCGGAAGAACCTGGACATGGGCACGCTTG
GCACAAGCCTCTCCACCCCATCGACGGGTGGGACATCATCGGCGTTGGTC
TTGCATGCATAGGTCTCATGATCGCTGCCGCTGGCGGGATCGGAGGGGGG
GGTATTCTGGTGCCCCTATATATCCTCGTTTTGGGTTTTGATCCGAAGCA
CGCTATTCCGCTTTCGAACATCACCATCTTTGGAGGTGCAATCACGAACA
CTGTCCTAAATCTCAGTAAGAGACACCCCGATGCCGATCGACCCCTAGTC
GACTGGGACCTGATCCTCGTCATGGAGCCGCTTACGATCGGTGGCGCGCT
AGTGGGAAGCTTTATTAACAAGGTGATGTCGGGTTCGAGTTTTCGACGGC
CGGTTCTGTTGGCTGCGCTTTGCTTGGCAGTGGTTTTCGCGTTTGTTCTA
AGACGAACCACCGTCGTCATTCCCTCTGGACCGACTCCCGCCGCACAAAG
CACTGCGACGGAGGATGTGTCGACGTTAGGGCTAGCGCAGCGATTACTCC
GTGGTGAGGGATGGGAATATTTTTCTGAAGAAGAGTCTTCATTGACGCGA
TCGATTCGACGGCTCAAGGGTGGTATTTCATCTCCCGCTCCTCCGGGGCA
TCCTTTCTTCTCAGATGACGAGTCTTCGCCCGTGATGGAATCGTTCCCGG
AAGAACCTGGACATGGGCACGCTTGGCACAAGCCTCTCCACCCCATCGAC
GGGTGGGACATCATCGGCGTTGGTCTTGCATGCATAGGTCTCATGATCGC
TGCCGCTGGCGGGATCGGAGGGGGGGGTATTCTGGTGCCCCTATATATCC
TCGTTTTGGGTTTTGATCCGAAGCACGCTATTCCGCTTTCGAACATCACC
ATCTTTGGAGGTGCAATCACGAACACTGTCCTAAATCTCAGTAAGAGACA
CCCCGATGCCGATCGACCCCTAGTCGACTGGGACCTGATCCTCGTCATGG
AGCCGCTTACGATCGGTGGCGCGCTAGTGGGAAGCTTTATTAACAAGGTG
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