mRNA_H-elongata_contig66034.14194.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: D8LFN1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFN1_ECTSI) HSP 1 Score: 273 bits (698), Expect = 3.820e-87 Identity = 160/193 (82.90%), Postives = 170/193 (88.08%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVR GDDLRVDLDLDFK+ACFG EEKVRIRHLETC TC GSGVKPGAK + XXXXXXXXVVIQ TRTPLGAFQTQTTCPTCRGTG+VVEEY E+TKQVKV++P GV+DGNKLRVKGEGDAGAKGGPVGDLYVFL VKS FKRTGKDIYS++ +
Sbjct: 186 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVR-GDDLRVDLDLDFKSACFGVEEKVRIRHLETCNTCSGSGVKPGAKVSXXXXXXXXXVVIQATRTPLGAFQTQTTCPTCRGTGEVVEEYCGSCSGQGVVEKTKQVKVKVPAGVDDGNKLRVKGEGDAGAKGGPVGDLYVFLNVKSDRKFKRTGKDIYSEQKI 377
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: B5Y3P1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3P1_PHATC) HSP 1 Score: 236 bits (603), Expect = 2.940e-73 Identity = 117/193 (60.62%), Postives = 134/193 (69.43%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFDSFFG R GP+ GDDLR DL +DFK A FGGEEKVRIRHLETC TC GSGVKPG+K + V +Q TRTPLG FQTQ TC TCRGTG+ V+EY ++TKQ+KV +P GVEDGNKLRV+GEGD+G KGGP GDLY+FL VK PTF+R G +IYSD TV
Sbjct: 162 EVDLGDIFDSFFGGGSSGMGGRNGPRRSGPI-VGDDLRFDLQVDFKTAVFGGEEKVRIRHLETCDTCTGSGVKPGSKVSMCTLCNGSGVTVQVTRTPLGNFQTQQTCATCRGTGERVDEYCGTCGGQGVNQKTKQIKVTVPAGVEDGNKLRVRGEGDSGPKGGPAGDLYIFLKVKEDPTFRREGSEIYSDTTV 353
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A1Z5KP79_FISSO (Molecular chaperone DnaJ n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP79_FISSO) HSP 1 Score: 229 bits (585), Expect = 1.100e-70 Identity = 122/195 (62.56%), Postives = 144/195 (73.85%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXX--RQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFD+FFG ++GPV GDDLR DL++DFK A FGGE+KV+IRHLETC TCGG+GVKPGAK + XXXXXXXXV +Q TRTPLG FQTQ TCPTCRGTGQ VEEY ++TKQ+KV +PPGVE+GNKLRV+GEGDAG GGP GDLY+FL VK P F+R G +IYS+ +
Sbjct: 152 EVDLGDIFDTFFGGGGASGFGGGRRTARQRGPV-IGDDLRFDLEIDFKTAVFGGEQKVKIRHLETCDTCGGNGVKPGAKISXXXXXXXXXVTMQVTRTPLGNFQTQQTCPTCRGTGQRVEEYCGSCGGQGLNQKTKQIKVTVPPGVENGNKLRVRGEGDAGPNGGPAGDLYIFLKVKDDPVFRREGPEIYSEAKI 345
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S1V3D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V3D0_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.980e-70 Identity = 129/198 (65.15%), Postives = 145/198 (73.23%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXR-----QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFDSFFGXXXXXXXXXXXXX +GP+ GDDLR DL++DFK A FGGEEKVRIRHLE C TC G G+KPGA+ NT V IQ TRTPLG FQTQ TCP CRGTGQ VEEY ++KQ+KV IPPGVEDGNKLRV+ EGDAG GGP GDLY+FL VK+ TFKR G +IYSD ++
Sbjct: 137 EVDLGDIFDSFFGXXXXXXXXXXXXXXARTRTRGPI-VGDDLRFDLEIDFKTAVFGGEEKVRIRHLEKCGTCDGDGIKPGARVNTCSACGGSGVTIQVTRTPLGNFQTQQTCPQCRGTGQEVEEYCGTCSGQGVVTKSKQIKVTIPPGVEDGNKLRVRSEGDAGPNGGPAGDLYIFLNVKADKTFKREGPEIYSDESI 333
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S1FNN1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNN1_9STRA) HSP 1 Score: 228 bits (580), Expect = 8.020e-70 Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
QVD+SDIF+SFFG XXXXXXX R GPV GDDLR DLD+DF ACFGGEEKVRIRHLETC TC GSGVKPG++ XXXXXXXXV +Q TRTPLG FQTQ C C+GTGQ+V+EY E TKQVKV +P GVEDGNKLRV+GEGDAG KGGP GDLY+FL VK+ F+R G DIYSD TV
Sbjct: 168 QVDISDIFESFFGGXXXXXXXR----RSGPV-PGDDLRFDLDIDFTTACFGGEEKVRIRHLETCDTCTGSGVKPGSQVRXXXXXXXXXVTMQVTRTPLGNFQTQQPCQVCKGTGQMVDEYCGTCSGQGRREVTKQVKVTVPAGVEDGNKLRVRGEGDAGPKGGPAGDLYIFLRVKNDKRFRREGPDIYSDVTV 355
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2UT22_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UT22_9STRA) HSP 1 Score: 226 bits (577), Expect = 2.200e-69 Identity = 134/199 (67.34%), Postives = 151/199 (75.88%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXR------QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFDSFFG XXXXXXXXXXX +GPV AGDDLR DL+LDFK A FGGEEKVRIRHLETCTTC G+GVKPG+K + XXXXXX +Q TRTPLG FQTQ C +CRGTGQ VEEY ++TKQ+KV IPPGVEDGNKLRV+GEGDAG GGP GDLY+FL VK+ TF+R G +IYSD +
Sbjct: 158 EVDLGDIFDSFFGGGXXXXXXXXXXXXXXRGRTRGPV-AGDDLRFDLELDFKTAVFGGEEKVRIRHLETCTTCTGNGVKPGSKISXXXXXXXAGATMQVTRTPLGNFQTQQACSSCRGTGQKVEEYCGSCSGQGLNQKTKQIKVTIPPGVEDGNKLRVRGEGDAGPNGGPPGDLYIFLKVKTDTTFRREGPEIYSDTNI 355
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2A588_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2A588_9STRA) HSP 1 Score: 226 bits (577), Expect = 7.760e-69 Identity = 134/197 (68.02%), Postives = 153/197 (77.66%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXR----QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDLSDIFDSFFG XXXXXXXXXXX +GP+ AGDDLR DL++DFK A FGGEEKVRIRHLETC TC GSGVKPG+K + XXXXXXXXV +Q TRTPLG FQTQ TCP CRGTGQ VEEY ++TKQ+KV +PPGVEDGNKLRV+ EGD+G GGP GDLY+FL VK F+R G +IYSD ++
Sbjct: 210 EVDLSDIFDSFFGGGXXXXXXXXXXXXXXXTRGPI-AGDDLRFDLEIDFKTAVFGGEEKVRIRHLETCGTCTGSGVKPGSKVSXXXXXXXXXVTMQVTRTPLGNFQTQQTCPACRGTGQRVEEYCGTCSGQGRVQKTKQIKVTVPPGVEDGNKLRVRSEGDSGPNGGPAGDLYIFLRVKEDRNFRREGPEIYSDASI 405
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A835YPT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT5_9STRA) HSP 1 Score: 224 bits (572), Expect = 1.090e-68 Identity = 137/193 (70.98%), Postives = 146/193 (75.65%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
VDLSDIF XXXXXXXXXX R PVR GDDLRVDLDLDFK ACFG EEKVRIRHLETC TC GSG KPGAK +TXXXXXX VVIQ RTPLGAFQTQT+CP CRG+GQ VEEY E KQVKV+IP GV+ G KLRV+ EGDA AKG P GDLYVFL VKSHPTF R G DIY+D+T+
Sbjct: 149 DVDLSDIFXXXXXXXXXXXXXXXARSR-APVR-GDDLRVDLDLDFKTACFGSEEKVRIRHLETCDTCTGSGAKPGAKVSTXXXXXXQGVVIQVQRTPLGAFQTQTSCPVCRGSGQRVEEYCGTCGGRGLVETAKQVKVKIPAGVDTGTKLRVRNEGDA-AKGAPSGDLYVFLNVKSHPTFTRKGSDIYADKTI 338
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2A943_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A943_TRICV) HSP 1 Score: 222 bits (565), Expect = 1.980e-68 Identity = 128/197 (64.97%), Postives = 145/197 (73.60%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAG----DDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFDSFFG XXXXXXXX DDLR DL++DFK A FGGEEKVRIRHLETCTTCGG+GVKPG+K + XXXXXXXXV +Q TRTPLG FQTQ C CRGTGQ +EEY ++TKQ+KV IPPGVEDGNKLRV+GEGDAG GGP GDLY+FL VK F+RTG +IYSD ++
Sbjct: 144 EVDLGDIFDSFFGGGGGMXXXXXXXXXXXXXXXXXXXXDDLRFDLEIDFKTAVFGGEEKVRIRHLETCTTCGGNGVKPGSKVSXXXXXXXXXVTMQVTRTPLGNFQTQQVCSACRGTGQRIEEYCGTCSGQGLNQKTKQIKVTIPPGVEDGNKLRVRGEGDAGPNGGPAGDLYIFLRVKEDKRFRRTGPEIYSDASI 340
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S3PUS4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUS4_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.030e-67 Identity = 129/198 (65.15%), Postives = 143/198 (72.22%), Query Frame = 1
Query: 1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQ-----GPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
+VDL DIFDSFFG XXXXXXXXXXXX Q GPV AGDDLR D ++DFK A FGGEEKVRIRHLE C TC G+GVKPG+K +T V +Q TRTPLG FQTQ TC TCRGTGQ VEEY +TKQ+KV IP GVE+GNKLRV+GEGDAG GGP GDLY+FL VK TF+R G +IYSD V
Sbjct: 159 EVDLGDIFDSFFGGXXXXXXXXXXXXXQRQRTRGPV-AGDDLRFDSEIDFKTAIFGGEEKVRIRHLEKCDTCEGNGVKPGSKVSTCGVCNGMGVTMQVTRTPLGNFQTQQTCSTCRGTGQKVEEYCGTCSGKGLNSKTKQIKVTIPAGVENGNKLRVRGEGDAGPNGGPPGDLYIFLRVKESSTFRREGPEIYSDAAV 355 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66034.14194.1 >prot_H-elongata_contig66034.14194.1 ID=prot_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp QVDLSDIFDSFFGGGGMGGGGGRQQRRQGPVRAGDDLRVDLDLDFKAACFback to top mRNA from alignment at H-elongata_contig66034:187..3147+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66034.14194.1 ID=mRNA_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2961bp|location=Sequence derived from alignment at H-elongata_contig66034:187..3147+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66034:187..3147+ >mRNA_H-elongata_contig66034.14194.1 ID=mRNA_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig66034:187..3147+ (Himanthalia elongata Himel1 dioecious)back to top |