mRNA_H-elongata_contig66034.14194.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66034.14194.1
Unique NamemRNA_H-elongata_contig66034.14194.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: D8LFN1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFN1_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 3.820e-87
Identity = 160/193 (82.90%), Postives = 170/193 (88.08%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVR GDDLRVDLDLDFK+ACFG EEKVRIRHLETC TC GSGVKPGAK + XXXXXXXXVVIQ TRTPLGAFQTQTTCPTCRGTG+VVEEY          E+TKQVKV++P GV+DGNKLRVKGEGDAGAKGGPVGDLYVFL VKS   FKRTGKDIYS++ +
Sbjct:  186 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVR-GDDLRVDLDLDFKSACFGVEEKVRIRHLETCNTCSGSGVKPGAKVSXXXXXXXXXVVIQATRTPLGAFQTQTTCPTCRGTGEVVEEYCGSCSGQGVVEKTKQVKVKVPAGVDDGNKLRVKGEGDAGAKGGPVGDLYVFLNVKSDRKFKRTGKDIYSEQKI 377          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: B5Y3P1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3P1_PHATC)

HSP 1 Score: 236 bits (603), Expect = 2.940e-73
Identity = 117/193 (60.62%), Postives = 134/193 (69.43%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFDSFFG             R GP+  GDDLR DL +DFK A FGGEEKVRIRHLETC TC GSGVKPG+K +         V +Q TRTPLG FQTQ TC TCRGTG+ V+EY          ++TKQ+KV +P GVEDGNKLRV+GEGD+G KGGP GDLY+FL VK  PTF+R G +IYSD TV
Sbjct:  162 EVDLGDIFDSFFGGGSSGMGGRNGPRRSGPI-VGDDLRFDLQVDFKTAVFGGEEKVRIRHLETCDTCTGSGVKPGSKVSMCTLCNGSGVTVQVTRTPLGNFQTQQTCATCRGTGERVDEYCGTCGGQGVNQKTKQIKVTVPAGVEDGNKLRVRGEGDSGPKGGPAGDLYIFLKVKEDPTFRREGSEIYSDTTV 353          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A1Z5KP79_FISSO (Molecular chaperone DnaJ n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP79_FISSO)

HSP 1 Score: 229 bits (585), Expect = 1.100e-70
Identity = 122/195 (62.56%), Postives = 144/195 (73.85%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXX--RQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFD+FFG               ++GPV  GDDLR DL++DFK A FGGE+KV+IRHLETC TCGG+GVKPGAK + XXXXXXXXV +Q TRTPLG FQTQ TCPTCRGTGQ VEEY          ++TKQ+KV +PPGVE+GNKLRV+GEGDAG  GGP GDLY+FL VK  P F+R G +IYS+  +
Sbjct:  152 EVDLGDIFDTFFGGGGASGFGGGRRTARQRGPV-IGDDLRFDLEIDFKTAVFGGEQKVKIRHLETCDTCGGNGVKPGAKISXXXXXXXXXVTMQVTRTPLGNFQTQQTCPTCRGTGQRVEEYCGSCGGQGLNQKTKQIKVTVPPGVENGNKLRVRGEGDAGPNGGPAGDLYIFLKVKDDPVFRREGPEIYSEAKI 345          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S1V3D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V3D0_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.980e-70
Identity = 129/198 (65.15%), Postives = 145/198 (73.23%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXR-----QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFDSFFGXXXXXXXXXXXXX      +GP+  GDDLR DL++DFK A FGGEEKVRIRHLE C TC G G+KPGA+ NT        V IQ TRTPLG FQTQ TCP CRGTGQ VEEY           ++KQ+KV IPPGVEDGNKLRV+ EGDAG  GGP GDLY+FL VK+  TFKR G +IYSD ++
Sbjct:  137 EVDLGDIFDSFFGXXXXXXXXXXXXXXARTRTRGPI-VGDDLRFDLEIDFKTAVFGGEEKVRIRHLEKCGTCDGDGIKPGARVNTCSACGGSGVTIQVTRTPLGNFQTQQTCPQCRGTGQEVEEYCGTCSGQGVVTKSKQIKVTIPPGVEDGNKLRVRSEGDAGPNGGPAGDLYIFLNVKADKTFKREGPEIYSDESI 333          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S1FNN1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNN1_9STRA)

HSP 1 Score: 228 bits (580), Expect = 8.020e-70
Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            QVD+SDIF+SFFG XXXXXXX     R GPV  GDDLR DLD+DF  ACFGGEEKVRIRHLETC TC GSGVKPG++   XXXXXXXXV +Q TRTPLG FQTQ  C  C+GTGQ+V+EY          E TKQVKV +P GVEDGNKLRV+GEGDAG KGGP GDLY+FL VK+   F+R G DIYSD TV
Sbjct:  168 QVDISDIFESFFGGXXXXXXXR----RSGPV-PGDDLRFDLDIDFTTACFGGEEKVRIRHLETCDTCTGSGVKPGSQVRXXXXXXXXXVTMQVTRTPLGNFQTQQPCQVCKGTGQMVDEYCGTCSGQGRREVTKQVKVTVPAGVEDGNKLRVRGEGDAGPKGGPAGDLYIFLRVKNDKRFRREGPDIYSDVTV 355          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2UT22_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UT22_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.200e-69
Identity = 134/199 (67.34%), Postives = 151/199 (75.88%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXR------QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFDSFFG  XXXXXXXXXXX       +GPV AGDDLR DL+LDFK A FGGEEKVRIRHLETCTTC G+GVKPG+K + XXXXXX    +Q TRTPLG FQTQ  C +CRGTGQ VEEY          ++TKQ+KV IPPGVEDGNKLRV+GEGDAG  GGP GDLY+FL VK+  TF+R G +IYSD  +
Sbjct:  158 EVDLGDIFDSFFGGGXXXXXXXXXXXXXXRGRTRGPV-AGDDLRFDLELDFKTAVFGGEEKVRIRHLETCTTCTGNGVKPGSKISXXXXXXXAGATMQVTRTPLGNFQTQQACSSCRGTGQKVEEYCGSCSGQGLNQKTKQIKVTIPPGVEDGNKLRVRGEGDAGPNGGPPGDLYIFLKVKTDTTFRREGPEIYSDTNI 355          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2A588_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2A588_9STRA)

HSP 1 Score: 226 bits (577), Expect = 7.760e-69
Identity = 134/197 (68.02%), Postives = 153/197 (77.66%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXR----QGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDLSDIFDSFFG  XXXXXXXXXXX     +GP+ AGDDLR DL++DFK A FGGEEKVRIRHLETC TC GSGVKPG+K + XXXXXXXXV +Q TRTPLG FQTQ TCP CRGTGQ VEEY          ++TKQ+KV +PPGVEDGNKLRV+ EGD+G  GGP GDLY+FL VK    F+R G +IYSD ++
Sbjct:  210 EVDLSDIFDSFFGGGXXXXXXXXXXXXXXXTRGPI-AGDDLRFDLEIDFKTAVFGGEEKVRIRHLETCGTCTGSGVKPGSKVSXXXXXXXXXVTMQVTRTPLGNFQTQQTCPACRGTGQRVEEYCGTCSGQGRVQKTKQIKVTVPPGVEDGNKLRVRSEGDSGPNGGPAGDLYIFLRVKEDRNFRREGPEIYSDASI 405          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A835YPT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT5_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.090e-68
Identity = 137/193 (70.98%), Postives = 146/193 (75.65%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
             VDLSDIF     XXXXXXXXXX   R  PVR GDDLRVDLDLDFK ACFG EEKVRIRHLETC TC GSG KPGAK +TXXXXXX  VVIQ  RTPLGAFQTQT+CP CRG+GQ VEEY          E  KQVKV+IP GV+ G KLRV+ EGDA AKG P GDLYVFL VKSHPTF R G DIY+D+T+
Sbjct:  149 DVDLSDIFXXXXXXXXXXXXXXXARSR-APVR-GDDLRVDLDLDFKTACFGSEEKVRIRHLETCDTCTGSGAKPGAKVSTXXXXXXQGVVIQVQRTPLGAFQTQTSCPVCRGSGQRVEEYCGTCGGRGLVETAKQVKVKIPAGVDTGTKLRVRNEGDA-AKGAPSGDLYVFLNVKSHPTFTRKGSDIYADKTI 338          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S2A943_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A943_TRICV)

HSP 1 Score: 222 bits (565), Expect = 1.980e-68
Identity = 128/197 (64.97%), Postives = 145/197 (73.60%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQGPVRAG----DDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFDSFFG     XXXXXXXX            DDLR DL++DFK A FGGEEKVRIRHLETCTTCGG+GVKPG+K + XXXXXXXXV +Q TRTPLG FQTQ  C  CRGTGQ +EEY          ++TKQ+KV IPPGVEDGNKLRV+GEGDAG  GGP GDLY+FL VK    F+RTG +IYSD ++
Sbjct:  144 EVDLGDIFDSFFGGGGGMXXXXXXXXXXXXXXXXXXXXDDLRFDLEIDFKTAVFGGEEKVRIRHLETCTTCGGNGVKPGSKVSXXXXXXXXXVTMQVTRTPLGNFQTQQVCSACRGTGQRIEEYCGTCSGQGLNQKTKQIKVTIPPGVEDGNKLRVRGEGDAGPNGGPAGDLYIFLRVKEDKRFRRTGPEIYSDASI 340          
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Match: A0A7S3PUS4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUS4_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.030e-67
Identity = 129/198 (65.15%), Postives = 143/198 (72.22%), Query Frame = 1
Query:    1 QVDLSDIFDSFFGXXXXXXXXXXXXXRQ-----GPVRAGDDLRVDLDLDFKAACFGGEEKVRIRHLETCTTCGGSGVKPGAKSNTXXXXXXXXVVIQTTRTPLGAFQTQTTCPTCRGTGQVVEEYXXXXXXXXXXERTKQVKVRIPPGVEDGNKLRVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV 579
            +VDL DIFDSFFG XXXXXXXXXXXX Q     GPV AGDDLR D ++DFK A FGGEEKVRIRHLE C TC G+GVKPG+K +T        V +Q TRTPLG FQTQ TC TCRGTGQ VEEY           +TKQ+KV IP GVE+GNKLRV+GEGDAG  GGP GDLY+FL VK   TF+R G +IYSD  V
Sbjct:  159 EVDLGDIFDSFFGGXXXXXXXXXXXXXQRQRTRGPV-AGDDLRFDSEIDFKTAIFGGEEKVRIRHLEKCDTCEGNGVKPGSKVSTCGVCNGMGVTMQVTRTPLGNFQTQQTCSTCRGTGQKVEEYCGTCSGKGLNSKTKQIKVTIPAGVENGNKLRVRGEGDAGPNGGPPGDLYIFLRVKESSTFRREGPEIYSDAAV 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66034.14194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFN1_ECTSI3.820e-8782.90Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
B5Y3P1_PHATC2.940e-7360.62Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KP79_FISSO1.100e-7062.56Molecular chaperone DnaJ n=2 Tax=Fistulifera solar... [more]
A0A7S1V3D0_9STRA1.980e-7065.15Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1FNN1_9STRA8.020e-7068.91Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2UT22_9STRA2.200e-6967.34Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S2A588_9STRA7.760e-6968.02Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID... [more]
A0A835YPT5_9STRA1.090e-6870.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2A943_TRICV1.980e-6864.97Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3PUS4_9STRA1.030e-6765.15Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66034contigH-elongata_contig66034:187..3147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue5.2e-59
Seed eggNOG ortholog2850.Phatr13424
KEGG koko:K03686
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.DnaJ central domain
EggNOG OGs2XBB9@2836,COG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-04_001500.1
Exons5
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66034.14194.1prot_H-elongata_contig66034.14194.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66034 187..3147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.1621954-CDS-H-elongata_contig66034:186..2831622931049.1621954-CDS-H-elongata_contig66034:186..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 187..283 +
1691679677.0909238-CDS-H-elongata_contig66034:186..2831691679677.0909238-CDS-H-elongata_contig66034:186..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 187..283 +
1622931049.1769109-CDS-H-elongata_contig66034:748..8161622931049.1769109-CDS-H-elongata_contig66034:748..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 749..816 +
1691679677.1040652-CDS-H-elongata_contig66034:748..8161691679677.1040652-CDS-H-elongata_contig66034:748..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 749..816 +
1622931049.1961071-CDS-H-elongata_contig66034:1544..17241622931049.1961071-CDS-H-elongata_contig66034:1544..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 1545..1724 +
1691679677.117717-CDS-H-elongata_contig66034:1544..17241691679677.117717-CDS-H-elongata_contig66034:1544..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 1545..1724 +
1622931049.2152421-CDS-H-elongata_contig66034:2063..21291622931049.2152421-CDS-H-elongata_contig66034:2063..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 2064..2129 +
1691679677.1287968-CDS-H-elongata_contig66034:2063..21291691679677.1287968-CDS-H-elongata_contig66034:2063..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 2064..2129 +
1622931049.2326183-CDS-H-elongata_contig66034:2979..31471622931049.2326183-CDS-H-elongata_contig66034:2979..3147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 2980..3147 +
1691679677.1371052-CDS-H-elongata_contig66034:2979..31471691679677.1371052-CDS-H-elongata_contig66034:2979..3147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66034 2980..3147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66034.14194.1

>prot_H-elongata_contig66034.14194.1 ID=prot_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
QVDLSDIFDSFFGGGGMGGGGGRQQRRQGPVRAGDDLRVDLDLDFKAACF
GGEEKVRIRHLETCTTCGGSGVKPGAKSNTCGQCSGSGVVIQTTRTPLGA
FQTQTTCPTCRGTGQVVEEYCGACSGQGLVERTKQVKVRIPPGVEDGNKL
RVKGEGDAGAKGGPVGDLYVFLGVKSHPTFKRTGKDIYSDRTV
back to top

mRNA from alignment at H-elongata_contig66034:187..3147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66034.14194.1 ID=mRNA_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2961bp|location=Sequence derived from alignment at H-elongata_contig66034:187..3147+ (Himanthalia elongata Himel1 dioecious)
CAAGTGGACCTGTCTGACATTTTTGACAGCTTCTTCGGGGGTGGAGGCAT GGGCGGCGGAGGAGGACGCCAGCAGCGGCGACAAGGGCCCGTCCGAGGTG AGAGAGTGTGTGCGATACCTTGAAAATGAACGGCTAAGGAAGAACGGTCG GCTTAGATTTCGGAGGAGAGGAGAGCGAAGTTTTGTCTTCACTCTTTTAT CTTTTCCACGCTTTCAGATCTTAAGCGGCGTGAAGTTCAAGTTCAAGTCG AAATAGGGAAAGGAGGAGGGGGGGGGCAGTCCGAGTTTTCTGGGGATCAG GCGTTACCGTTCCCCGCTCCCCTCTTCAAGTTTGAAGCAACGTGAAACAC ACAAAGCTGCTAAAAAACGGGTTGAATGTTGCCCTTCTTGAAGGTCAGCT TCCCGCAGCGTGTGGTTTGCTCGAAGCGGTGGATGAGACTGGTGTGCGTA GTGTGTATGGCCGCTTCATCCTACAATTCTACGGATTATATATGTATATA TATATATATATCTTTCTCAAGATATTTTGCGGTCGAATCGTATCCTGCTT GTATATCGTGAGCAGGTGACGACCTCCGGGTGGACCTTGACCTCGACTTC AAGGCAGCGTGCTTCGGTGGAGAAGAGAAGGTGTGCCCTCCAGCTGTCGT TGCTGTCTATGTTCCCGCACCTGTGGCAGGATATTGTAGGTATCCTGGTA GAGGCTGTCTCGTGGTTGTCGCCACGCGACTATCGCCAGTTTCTCGGAAG AGGAGGGGGTCGACACTTGGTTGTGTCCATATCTCGCCCAGATCATATTC GAAGTCCGCGGCGTTTGCTTTCTTGCTGTCTTCGCGCAATCGTTGCCGAG GTTATCGAACGGGGGGATACACATAACCCATCCCCTGGGATGCGACTTAA TCTGTTTCCGACGTTACATTCCCCCATGCGACTGATCACACGCGTATATT AGTAATGACGAATACTATACCAAGTATATACTGAATGTGACACATTAAAC AATCCGTGCGGTGTCATATCGCCTTCTCTTTGGTACCCCGACCCCCGGGG AGAAATGTATTCTAAAAATCCCATATTATCTTTGTAAACCTTTTGGCTCT AAGGGAGGGAGAGGGAAAGGTGGCAGGATTACTTTTTAAGTGAGAGCTTG AGAACGTAATCGCTTCGCCCTCTCATAATTGTCTTTTTTTGTTTAGGGAG GAGGGGGAGGTGTACTCGACGAAAGCGCGAGGGATCCTGGACGGGCATCC AAGGAGAGGGCAATAGGGTTGGGATATATAGTGACCTTAGAGCTAATTGT TGCGCGACGAACCAGGATAAATAATTGCAACAAAACGAAAAATGAAAAAA TACTTCAGGTGCGCATCCGCCACTTGGAGACCTGCACCACCTGTGGTGGC AGCGGCGTGAAGCCCGGTGCCAAGTCCAACACGTGCGGGCAGTGTAGCGG ATCCGGGGTCGTCATTCAGACCACCCGGACCCCGCTCGGTGCCTTCCAGA CCCAGACGACTTGTCCCACCTGCCGAGGAACGGGGCAGGTGGGTGTCTTC AGGAACCTCGCCACGTGGTCTAACGAGGACGGAGGGATCGGGGGGAAGAG AGGGAGGGGGGGTTTCTGGTTGTTTCTTTTTTTCAGCCTACATGGCGCAA GTTAGACCGAGTTCCCGTCTCTGGGATTCCATGTTGCTCGGATGCTTGAA CGTTGTGTTATTGAATAGCAGGAGGAGGTAGAAACTACATGTCTAACGTG GCGCGCGAGGCGACAACATTGATTTGTGTCCAGGTGTGTGTGTACTTACG TTTGCGTGCCTTAGCTGTTGTTTGACCAAACGTAAGTAAATCCGCTCTTC TATCGAACGTACCAAAAAAAATAAAAGGTGGTCGAAGAGTACTGCGGGGC CTGTTCTGGACAGGGTCTGGTGGAGAGGACCAAGCAGGTCAAGGTGAGAA TAGAAAGACGGTTGACAACGCTTGGGCCCGGTGGTCTCTCTCCCACCAGT GAAAGGCGATACCCGCAGAGTGCAGATCTGGTATAACAGTCAAATATTTA TTTTGCGACAGTGGTGTTGCCTCGCGCCGCCTCCCCCCTCCCCCCGCACT CCTACCCCCACGAGGCGGCTGAGGCGGCGTTACCCTTAACAGTGTCGGTT GTTATTATTGTGCCATATTTCTTCCCCTTGTCATCGCGCCGGGGGTGGAT CGTGGGGTGCTTTCCCGCCTTGCCGCCGGCTCGAGATAGCTCAAGGGCTC TTTATTGAAATGCTCCGACCGATTATGTGCGTCATTGTGCAACTGCCCGC TTTGTCCTAAAACATGAGCGCTGCGCGTCTCTTTCGTTACGATAACGATA ACTCTGCGGAGTGTATCCGTCGCCACAGACCGCCTCAGAAAGTGGTGTCG ATGTCCGAGCTAATTTTTTCTCGGCAGATTCCGTACTCAGCCTCCGCGAA ATCGTCAAAACGCACGATTGGAGGTTACGAGATGGAGAGTAGTGCCCCGT GCAATTGAAAACGCTACGGGTGTGGGCAAGAGCCTTAGAGGTTGATTTCC TGGAGTCTATGAAGTACACCCCACTTTGAGAAACCGGCGTCTCTCCTTTC TTCATCCCTTCCGACGCACAAGAGCCCTCCGGGTACCTTGTAACCTTTTT TTTCAAATAGCTTAGTCTCGGAGAGATTCTACGCGTCGACCTGTCACAGC TCCAGCTCTACCACATGCGGGGGGTTTTACCGTTTCGTGGCGCTCTTCAA AAACGCCTCCTTATGTATGTGTTTGTGTATCCTGCGCCTTCAGGTGAGGA TACCGCCGGGAGTGGAGGACGGCAACAAGCTGCGAGTCAAGGGCGAGGGA GATGCGGGGGCGAAGGGTGGCCCCGTTGGAGACTTGTACGTTTTCCTCGG CGTAAAGAGTCACCCGACGTTCAAGCGCACGGGAAAAGACATTTACAGCG ACAGGACGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig66034:187..3147+

>mRNA_H-elongata_contig66034.14194.1 ID=mRNA_H-elongata_contig66034.14194.1|Name=mRNA_H-elongata_contig66034.14194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig66034:187..3147+ (Himanthalia elongata Himel1 dioecious)
CAAGTGGACCTGTCTGACATTTTTGACAGCTTCTTCGGGGGTGGAGGCAT
GGGCGGCGGAGGAGGACGCCAGCAGCGGCGACAAGGGCCCGTCCGAGCAA
GTGGACCTGTCTGACATTTTTGACAGCTTCTTCGGGGGTGGAGGCATGGG
CGGCGGAGGAGGACGCCAGCAGCGGCGACAAGGGCCCGTCCGAGCAGGTG
ACGACCTCCGGGTGGACCTTGACCTCGACTTCAAGGCAGCGTGCTTCGGT
GGAGAAGAGAAGCAGGTGACGACCTCCGGGTGGACCTTGACCTCGACTTC
AAGGCAGCGTGCTTCGGTGGAGAAGAGAAGGTGCGCATCCGCCACTTGGA
GACCTGCACCACCTGTGGTGGCAGCGGCGTGAAGCCCGGTGCCAAGTCCA
ACACGTGCGGGCAGTGTAGCGGATCCGGGGTCGTCATTCAGACCACCCGG
ACCCCGCTCGGTGCCTTCCAGACCCAGACGACTTGTCCCACCTGCCGAGG
AACGGGGCAGGTGCGCATCCGCCACTTGGAGACCTGCACCACCTGTGGTG
GCAGCGGCGTGAAGCCCGGTGCCAAGTCCAACACGTGCGGGCAGTGTAGC
GGATCCGGGGTCGTCATTCAGACCACCCGGACCCCGCTCGGTGCCTTCCA
GACCCAGACGACTTGTCCCACCTGCCGAGGAACGGGGCAGGTGGTCGAAG
AGTACTGCGGGGCCTGTTCTGGACAGGGTCTGGTGGAGAGGACCAAGCAG
GTCAAGGTGGTCGAAGAGTACTGCGGGGCCTGTTCTGGACAGGGTCTGGT
GGAGAGGACCAAGCAGGTCAAGGTGAGGATACCGCCGGGAGTGGAGGACG
GCAACAAGCTGCGAGTCAAGGGCGAGGGAGATGCGGGGGCGAAGGGTGGC
CCCGTTGGAGACTTGTACGTTTTCCTCGGCGTAAAGAGTCACCCGACGTT
CAAGCGCACGGGAAAAGACATTTACAGCGACAGGACGGTGGTGAGGATAC
CGCCGGGAGTGGAGGACGGCAACAAGCTGCGAGTCAAGGGCGAGGGAGAT
GCGGGGGCGAAGGGTGGCCCCGTTGGAGACTTGTACGTTTTCCTCGGCGT
AAAGAGTCACCCGACGTTCAAGCGCACGGGAAAAGACATTTACAGCGACA
GGACGGTG
back to top