mRNA_H-elongata_contig65862.14170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65862.14170.1
Unique NamemRNA_H-elongata_contig65862.14170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.030e-34
Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   61 QARSTKTIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
            +A    T E   RAEL+TLRG+ AGTLT +LSCEGVL WW +     PLLARAARVVFG PAS+AVLE DF+DA  MM SSRS+ DAKYV+M+L LHGNLD IPE I EL
Sbjct:  512 EASQQPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPEL 621          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.580e-31
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
            + E++ RAEL  LR +  G+L   LSCE VL WW     + PLLAR ARVVFG PAS+AVLE DFS+AGRMMTSSRS++D+KYV+MI+ LHGNLD IPE I +L
Sbjct:  578 SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.030e-31
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
            + E++ RAEL  LR +  G+L A L CE VL WW     + PLLAR ARVV G  AS+AVLEHDFS+AGRMMTSSRS++D+KYV+MIL LHGNLD IPE I +L
Sbjct:  351 SFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.120e-31
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  148 ELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASGRSQR 414
            ELSC+ VL WW R  SS PLLARAARVVFG PAS+AVLE DF DAGR+MTSSRS+ DAKYV+MIL LHGNLD IPE I     +  S R
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPTAPSAR 119          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.120e-30
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   88 ESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASG 402
            E  RAEL+TLR  +   L  + SCEGVL WW R E S PLLAR ARVVF  PAS  V E D   AGRMMTSSRS+ DAKYV+M+L LHGN+D +PE+I EL A G
Sbjct:  623 ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADG 727          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.670e-29
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1
Query:   61 QARSTKTIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
            Q    ++ +++ RAEL  LR +  G L A L CE VL WW     + PLLAR ARVVFG PAS+AVLE  FS+AGRM TSSRS++D+ YV+MI+ LHGNL+ IPE I +L
Sbjct:  108 QNEEPQSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL 217          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.160e-19
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  202 PLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAK-YVDMILVLHGNLDFIPEVIVEL 390
            PLLAR ARVVFG PAS+AVLE DFS+AGRMMTSSR ++D+  YV+MIL LHGNLD IPE I +L
Sbjct:    7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.650e-19
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
            T E    AE +TLRG+ AG+LT +L CEGVL WW + E S PLLARAARV FG PA           AG          DAKYV+M+L LHG LD  PE I EL
Sbjct:  317 TFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPEL 399          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.870e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  205 LLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKY-VDMILVLHGNLDFIPEVIVEL 390
            LL   ARVVFG PAS+A LE DFS+AGRMMTSSRS++D+KY V+MIL LHGNLD IPE I  L
Sbjct:    8 LLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL 70          
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.280e-13
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWW-NR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAAS 399
            T++E  + E        A T  ++   E +L +W    ++  P +ARAARV+   PASSAVLE DFS AGR++T +RS + A YV+M+L L+GN ++IP  + +L+ S
Sbjct:  683 TMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKS 790          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LBK4_ECTSI3.030e-3466.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.580e-3162.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE7.030e-3162.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE7.120e-3169.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI6.120e-3061.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE8.670e-2955.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE2.160e-1973.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE9.650e-1951.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW12_9PHAE1.870e-1771.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVU5_9PHAE1.280e-1340.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65862contigH-elongata_contig65862:927..2420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size594
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65862.14170.1prot_H-elongata_contig65862.14170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65862 2115..2420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.856327-UTR-H-elongata_contig65862:926..9901622931045.856327-UTR-H-elongata_contig65862:926..990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65862 927..990 +
1691679675.6125581-UTR-H-elongata_contig65862:926..9901691679675.6125581-UTR-H-elongata_contig65862:926..990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65862 927..990 +
1622931045.8741164-UTR-H-elongata_contig65862:1890..21141622931045.8741164-UTR-H-elongata_contig65862:1890..2114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65862 1891..2114 +
1691679675.6204813-UTR-H-elongata_contig65862:1890..21141691679675.6204813-UTR-H-elongata_contig65862:1890..2114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65862 1891..2114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.8863645-CDS-H-elongata_contig65862:2114..24201622931045.8863645-CDS-H-elongata_contig65862:2114..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65862 2115..2420 +
1691679675.6287508-CDS-H-elongata_contig65862:2114..24201691679675.6287508-CDS-H-elongata_contig65862:2114..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65862 2115..2420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65862.14170.1

>prot_H-elongata_contig65862.14170.1 ID=prot_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASGRSQRCAKQDFRA
VVQPAAGASRASRCIWPSGPNRGVGGSCIGRGLLKPGSGATRKGAGAGFG
V*
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mRNA from alignment at H-elongata_contig65862:927..2420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65862.14170.1 ID=mRNA_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-elongata_contig65862:927..2420+ (Himanthalia elongata Himel1 dioecious)
AGCAACTGGTTCGTCAGCAAAAGCCGCAGTGATGGTCGACGATGAACCAA CAGGAGATGACAAGGTGCGTCATCCACACAGAGATCCACTGCTGTGATAT CTCGTGTACTCCGTTCGTGTGTTCTGTGTTGTACAAGTGGTAAAAAAGTT GAGCAGGGAAATCCAAAAGTTATTTGCAGCAGTGTTGTGGAGTAAAGTAG TAAACAAATGACTGCTGTTAAACAAAGTACAGTATGCATATAATACGCAA ATCAAAGGCTATGGGCACACCCAAACGGTAAATGATAATGGTGATGGGGG TGTTCGTCCCTTCTATTCTGGGGTGAGTCAACACACCTTTCGGTATCTTA TTTTCTTGGCGTATCAGCCGGGGTCACACAGGAGAAAGGTACACAAGGAG CTTTTTTTTATTTTCTTTTAATTGCCCCACCTTCAACCTGCGGTTCTTGC CTTTGATACTTAATGCGAGAAGGGTTCAGCAATCTCTTCCCTCTTTTGTG TGTCTACACACGAATAAATCGCTGTCGACTGCAGAGAAACAGTAAGAAAT AACATTTTATTTGACACTACCGAGGTTTGAACTCCTAACCTCTGCTGTTG CTAATGGGGTACGAGGTTGCCCATGTAGACTTATATTGATATTTCCATTT CAGGTAACTTCAGTTTTTGTGGTAAGCGGTAGTGTGAAATGAAAAATTTA CTTTAGGCCTTCGCTTCTCTCGGACACATGCACACACCTTGGTTCGGGTG CAGTCGGATTGTAATGTTAAATATTAGTTTATGTTTTGTGCCACGTGTTC GCAAAGAGAGGAAGAGAGTCGGAGAACATCATGATGCAGTGCGGCCCTTT CAGTATACGTGTAGTCTACCACATTGTCATATTATTAGTATCCTGATCAT CAGAAACACGAACACTTACCTTCTGTTTCGAATTGGCAATGCCCATTATA CACATGATTCACAGCGCGCTCTACGAAGACGATCGAGGAGAGCATTCGCG CCGAGCTCAAGACGCTGAGGGGTCTGGCTGCTGGCACACTGACGGCCGAG CTGAGCTGCGAGGGTGTGCTCATGTGGTGGAATAGATAAGAGAGCTCGTG CCCACTCCTGGCCCGGGCAGCTCGTGTGGTGTTCGGAACTCCAGCGTCGT CGGCGGTGCTCGAGCACGATTTCAGCGATGCTGGGCGCATGATGACGTCA TCGAGAAGCTCCATCGATGCCAAGTACGTGGACATGATCCTTGTTCTGCA CGGCAACCTGGACTTCATTCCCGAGGTCATTGTAGAGCTAGCCGCCAGCG GACGGAGTCAACGGTGCGCAAAGCAAGATTTCCGGGCGGTTGTCCAACCC GCTGCCGGAGCTTCAAGGGCTAGCCGGTGCATTTGGCCCAGTGGACCGAA TCGAGGAGTAGGAGGGAGCTGTATCGGGAGAGGGCTACTAAAGCCAGGCA GCGGGGCGACACGGAAGGGCGCTGGAGCTGGGTTTGGAGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig65862:927..2420+

>mRNA_H-elongata_contig65862.14170.1 ID=mRNA_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig65862:927..2420+ (Himanthalia elongata Himel1 dioecious)
ATGATGACGTCATCGAGAAGCTCCATCGATGCCAAGTACGTGGACATGAT
CCTTGTTCTGCACGGCAACCTGGACTTCATTCCCGAGGTCATTGTAGAGC
TAGCCGCCAGCGGACGGAGTCAACGGTGCGCAAAGCAAGATTTCCGGGCG
GTTGTCCAACCCGCTGCCGGAGCTTCAAGGGCTAGCCGGTGCATTTGGCC
CAGTGGACCGAATCGAGGAGTAGGAGGGAGCTGTATCGGGAGAGGGCTAC
TAAAGCCAGGCAGCGGGGCGACACGGAAGGGCGCTGGAGCTGGGTTTGGA
GTGTAGATGATGACGTCATCGAGAAGCTCCATCGATGCCAAGTACGTGGA
CATGATCCTTGTTCTGCACGGCAACCTGGACTTCATTCCCGAGGTCATTG
TAGAGCTAGCCGCCAGCGGACGGAGTCAACGGTGCGCAAAGCAAGATTTC
CGGGCGGTTGTCCAACCCGCTGCCGGAGCTTCAAGGGCTAGCCGGTGCAT
TTGGCCCAGTGGACCGAATCGAGGAGTAGGAGGGAGCTGTATCGGGAGAG
GGCTACTAAAGCCAGGCAGCGGGGCGACACGGAAGGGCGCTGGAGCTGGG
TTTGGAGTGTAG
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