mRNA_H-elongata_contig65862.14170.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 3.030e-34 Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query: 61 QARSTKTIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
+A T E RAEL+TLRG+ AGTLT +LSCEGVL WW + PLLARAARVVFG PAS+AVLE DF+DA MM SSRS+ DAKYV+M+L LHGNLD IPE I EL
Sbjct: 512 EASQQPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPEL 621
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.580e-31 Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1
Query: 79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
+ E++ RAEL LR + G+L LSCE VL WW + PLLAR ARVVFG PAS+AVLE DFS+AGRMMTSSRS++D+KYV+MI+ LHGNLD IPE I +L
Sbjct: 578 SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 127 bits (318), Expect = 7.030e-31 Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query: 79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
+ E++ RAEL LR + G+L A L CE VL WW + PLLAR ARVV G AS+AVLEHDFS+AGRMMTSSRS++D+KYV+MIL LHGNLD IPE I +L
Sbjct: 351 SFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 118 bits (296), Expect = 7.120e-31 Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 148 ELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASGRSQR 414
ELSC+ VL WW R SS PLLARAARVVFG PAS+AVLE DF DAGR+MTSSRS+ DAKYV+MIL LHGNLD IPE I + S R
Sbjct: 31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPTAPSAR 119
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 125 bits (315), Expect = 6.120e-30 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 88 ESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASG 402
E RAEL+TLR + L + SCEGVL WW R E S PLLAR ARVVF PAS V E D AGRMMTSSRS+ DAKYV+M+L LHGN+D +PE+I EL A G
Sbjct: 623 ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADG 727
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.670e-29 Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1
Query: 61 QARSTKTIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
Q ++ +++ RAEL LR + G L A L CE VL WW + PLLAR ARVVFG PAS+AVLE FS+AGRM TSSRS++D+ YV+MI+ LHGNL+ IPE I +L
Sbjct: 108 QNEEPQSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL 217
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.160e-19 Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 202 PLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAK-YVDMILVLHGNLDFIPEVIVEL 390
PLLAR ARVVFG PAS+AVLE DFS+AGRMMTSSR ++D+ YV+MIL LHGNLD IPE I +L
Sbjct: 7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 9.650e-19 Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWWNR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVEL 390
T E AE +TLRG+ AG+LT +L CEGVL WW + E S PLLARAARV FG PA AG DAKYV+M+L LHG LD PE I EL
Sbjct: 317 TFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPEL 399
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.870e-17 Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 205 LLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKY-VDMILVLHGNLDFIPEVIVEL 390
LL ARVVFG PAS+A LE DFS+AGRMMTSSRS++D+KY V+MIL LHGNLD IPE I L
Sbjct: 8 LLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL 70
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.280e-13 Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 79 TIEESIRAELKTLRGLAAGTLTAELSCEGVLMWW-NR*ESSCPLLARAARVVFGTPASSAVLEHDFSDAGRMMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAAS 399
T++E + E A T ++ E +L +W ++ P +ARAARV+ PASSAVLE DFS AGR++T +RS + A YV+M+L L+GN ++IP + +L+ S
Sbjct: 683 TMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKS 790 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65862.14170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65862.14170.1 >prot_H-elongata_contig65862.14170.1 ID=prot_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MMTSSRSSIDAKYVDMILVLHGNLDFIPEVIVELAASGRSQRCAKQDFRAback to top mRNA from alignment at H-elongata_contig65862:927..2420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65862.14170.1 ID=mRNA_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-elongata_contig65862:927..2420+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65862:927..2420+ >mRNA_H-elongata_contig65862.14170.1 ID=mRNA_H-elongata_contig65862.14170.1|Name=mRNA_H-elongata_contig65862.14170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig65862:927..2420+ (Himanthalia elongata Himel1 dioecious)back to top |