mRNA_H-elongata_contig65802.14165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65802.14165.1
Unique NamemRNA_H-elongata_contig65802.14165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: D8LKP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP1_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 6.250e-69
Identity = 115/177 (64.97%), Postives = 138/177 (77.97%), Query Frame = 1
Query:    1 MINWHFVMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLK----QGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEG-VSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGNTEVGVCYP 516
            M+NW F+ QG+L+VSHTF L+LFPF FL+ +Y+FVFFKLQ   F+ +    +     GEYFPLE MV +MF+ Q+ RVG L++RQ TSDVFL+DWEK G  KGQQA RGGAP Q G VSVWRQLLVANEWNRLGT+RRVNP+ SL+WM F+LG GRLRY+ATPQPDL +TE G   P
Sbjct:  120 MVNWPFLFQGLLMVSHTFVLFLFPFTFLISSYFFVFFKLQQSVFLMLPADREGYGSTGEYFPLELMVTVMFMFQVLRVGSLVYRQITSDVFLIDWEKDGARKGQQAGRGGAPNQGGGVSVWRQLLVANEWNRLGTRRRVNPVFSLVWMAFVLGGGRLRYNATPQPDLTDTEEGELNP 296          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A7S1TPB6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPB6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.380e-27
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    7 NWHFVMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLKQGEYFPLEAMV----YLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGNTEVGVCYPL 519
            ++ F+M+ ++L  H+F +  FP +F LC Y F FFK+Q   ++ +     +    P+  +     +LMF  Q+ R+  L++ QC  +VF VDWEK         P+        VS WRQ+L+ANEWN L TKRR +   +LIW+ F+L    +   ATPQP L +T  GV  PL
Sbjct:  629 SFEFLMRVLVLAMHSFNVTFFPLMFCLCAYLFTFFKMQAEVYLMLPSESAEEGREPISTVFIIFFHLMFFFQLARIIVLVYDQCHVEVFFVDWEK---------PKNA---NHEVSAWRQILIANEWNALQTKRRTSVTATLIWLCFVLIGAGIENVATPQPSLTDTRPGVTNPL 791          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A7S2RCM4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCM4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.980e-24
Identity = 64/172 (37.21%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    7 NWHFVMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLK------QGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGNTEVG 504
             W+F    + L+ H + L LFPF+FL CT WFVFFK+Q   ++ +  P K      + EY+  E ++  +F  Q   +  +++ QC +DVF VD E        +   GG+ GQ  VSVWR++ VANEW  L T+RR +   +L+++ F++    L+Y +TPQPD+ N + G
Sbjct:  667 TWYFWCSLVQLL-HCWNLMLFPFIFLYCTSWFVFFKMQDTAYLLL--PPKNEKYGNESEYYLAEVVIICLFWFQSAYLLHIIYLQCNADVFFVDMEN-------KKNSGGSSGQR-VSVWRRIFVANEWAELQTERRTSMTFTLVFLCFVMVGLDLQYLSTPQPDIYNLDRG 827          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A835Z317_9STRA (Transmembrane protein 67-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z317_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.110e-23
Identity = 60/157 (38.22%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   34 LLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLKQ----GEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGN 492
            L+ +H F   L P  F +C   F  FKLQ + +I +    ++    GEY PL+A+++ +F +Q+  V  +L+ QCT+ VF +DWE+GG+            G  G SVWRQLLVAN+WN L ++RR N   +L+ M F+L     +Y+A P P L +
Sbjct:  121 LIGAHAFVAVLLPLTFAICGALFALFKLQSQVYIVMPADREEYGRKGEYGPLKALLHTLFFLQLVHVLAVLYSQCTATVFFLDWERGGK-----------KGAGGGSVWRQLLVANKWNELQSRRRSNTPLTLLLMVFVLVGLGQQYNAAPWPSLAD 266          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A0L0HPB1_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HPB1_SPIPD)

HSP 1 Score: 106 bits (264), Expect = 2.490e-23
Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    7 NWHFVMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLKQGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGNTEVGVCYPL 519
            +++F+ + IL+++   A  LF F+  +  YWF F+K Q    + +  P    +     A+V    + Q   + K L+ QCT D+F +DWE+  RGK   A   G P    VSVWR + + NEWN++ T RRVN   SL+ M FI+   ++RY+ATPQP++ +   G+  P+
Sbjct:  533 DFNFLSRCILILAGCLAPLLFWFLLAVSAYWFFFYKNQTVMKVLL--PWSDSDLHKFNAIVVATLVCQSAYIIKQLYEQCTIDIFFIDWERS-RGKVMAAGGEGKPRLAAVSVWRSIFMMNEWNKMQTYRRVNIGFSLLAMYFIVEGLKVRYAATPQPNIHDLTPGLVSPI 700          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: F0XYJ9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYJ9_AURAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.990e-19
Identity = 58/151 (38.41%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   67 FPFVFLLCTYWFVFFKLQVRCFIFIHCPL----KQGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGK-GQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDLGNTEVG 504
            FPFVF+LC+Y+FVFFKLQ   +  +        K  EY+P+   +  M+  Q   V +++ R C  ++F VDWE   +   G+ AP         VSVWR + VANE++ + T RR +    L  + F L A  L  +ATPQPDLG+   G
Sbjct:  664 FPFVFILCSYYFVFFKLQEAAYTLLPAENRHDGKDFEYYPVRTAIISMWAFQTAVVLQIVVRMCQMEIFFVDWEPPRKPDVGKAAP---------VSVWRTIFVANEFSEMMTARRTSTHFVLFCLGFFLVAMGLENNATPQPDLGDLTAG 805          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A7S2WSC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WSC8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.120e-19
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   19 VMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCPLKQ----GEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTF 435
            V++ +  + HT +++ FPF+  +C+++FVFFKLQ   +I +    +      EYF   A + ++F  Q   +  L++RQC  D+F +DWEK    KG+ A          VS+WR ++V NEWNRL + R+ +   +L W+ F
Sbjct:  136 VIKSMSFLCHTISIFGFPFILAICSFFFVFFKLQEDVYIMLPSDSEYYGIGNEYFFFSASIQIIFWSQTVYISHLIYRQCQVDIFFIDWEKS---KGRYAD---------VSLWRMIMVVNEWNRLQSARKTSIEFNLFWIAF 266          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A507CGP8_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CGP8_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 3.560e-19
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   94 YWFVFFKLQVRCFIFIHCPLKQGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGK----------GQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDL 486
            Y+ +FFK Q    +F+  P   G+     A +  +F +Q+  V   +++QCT DVF +DWEK  RG           G  A R  AP    VSVWR + +AN+WN L T RRVN    ++W+ F++   R+RY ATPQPD+
Sbjct:  595 YFILFFKGQAGLGVFL--PYSVGDMITFNAALAAIFTLQLMYVIMTVYQQCTIDVFFIDWEKP-RGHTRESAATLLDGSHASRAKAP----VSVWRSVFIANQWNALQTYRRVNLEFCVVWVYFLVEGCRIRYVATPQPDI 728          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A507CNZ5_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CNZ5_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 3.680e-19
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   94 YWFVFFKLQVRCFIFIHCPLKQGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGK----------GQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDL 486
            Y+ +FFK Q    +F+  P   G+     A +  +F +Q+  V   +++QCT DVF +DWEK  RG           G  A R  AP    VSVWR + +AN+WN L T RRVN    ++W+ F++   R+RY ATPQPD+
Sbjct:  595 YFILFFKGQAGLGVFL--PYSVGDMITFNAALAAIFTLQLMYVIMTVYQQCTIDVFFIDWEKP-RGHTRESAATLLDGSHASRAKAP----VSVWRSVFIANQWNALQTYRRVNLEFCVVWVYFLVEGCRIRYVATPQPDI 728          
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Match: A0A0H5QQ30_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QQ30_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 1.350e-17
Identity = 59/159 (37.11%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   76 VFLLCTYWFVFFKLQVRCFIFIHCPLKQGEYFPLEAMVYLMF--LIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQQAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAGRLRYSATPQPDL----GNTEVGVCYPLCFNLG 534
            VF++CTY+ +FFK Q   FI +     Q EY     ++++ F     +CRV   L +Q + D+F +DWEK     G +    GA     VSVWR+L VANEWN L T R VN    LI + F+L    L Y AT QP L    G+  + +      + G
Sbjct:  267 VFIMCTYFLLFFKCQSTAFILLPLEDSQEEYVFTTVVIFVFFGKCFSICRV---LWQQISVDLFFMDWEKPKLVSGNET---GA--SSSVSVWRKLFVANEWNELATARNVNVDLLLIVLLFLLRGINLEYLATSQPSLSLTPGSASINILLRFAVSSG 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65802.14165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP1_ECTSI6.250e-6964.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TPB6_9STRA2.380e-2737.14Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RCM4_9STRA3.980e-2437.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z317_9STRA1.110e-2338.22Transmembrane protein 67-domain-containing protein... [more]
A0A0L0HPB1_SPIPD2.490e-2335.67Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
F0XYJ9_AURAN1.990e-1938.41Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2WSC8_9STRA3.120e-1934.27Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A507CGP8_9FUNG3.560e-1939.01Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A507CNZ5_9FUNG3.680e-1939.01Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A0H5QQ30_9EUKA1.350e-1737.11Uncharacterized protein n=1 Tax=Spongospora subter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65802contigH-elongata_contig65802:151..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue4.5e-57
Seed eggNOG ortholog2880.D8LKP1
Preferred nameTMEM67
KEGG koko:K13525,ko:K19348
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
GOsGO:0001763,GO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009799,GO:0009855,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010824,GO:0010826,GO:0010948,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0022008,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030433,GO:0030659,GO:0031005,GO:0031090,GO:0031253,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033043,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0035845,GO:0035869,GO:0036038,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042461,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043632,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045732,GO:0045786,GO:0045862,GO:0046530,GO:0046605,GO:0046606,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051493,GO:0051494,GO:0051603,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051787,GO:0060170,GO:0060255,GO:0060271,GO:0060429,GO:0060491,GO:0060562,GO:0061136,GO:0061138,GO:0065007,GO:0070507,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0097708,GO:0097711,GO:0098588,GO:0098590,GO:0098827,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140056,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902017,GO:1902115,GO:1902117,GO:1902855,GO:1902857,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905515,GO:1905897,GO:1905898
EggNOG free text desc.negative regulation of centrosome duplication
EggNOG OGsKOG4611@1,KOG4611@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04147
Hectar predicted targeting categorysignal anchor
Exons3
Model size540
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65802.14165.1prot_H-elongata_contig65802.14165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65802 151..1121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.3767753-CDS-H-elongata_contig65802:150..3091622931045.3767753-CDS-H-elongata_contig65802:150..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 151..309 +
1691679675.455494-CDS-H-elongata_contig65802:150..3091691679675.455494-CDS-H-elongata_contig65802:150..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 151..309 +
1622931045.41115-CDS-H-elongata_contig65802:618..7381622931045.41115-CDS-H-elongata_contig65802:618..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 619..738 +
1691679675.4692984-CDS-H-elongata_contig65802:618..7381691679675.4692984-CDS-H-elongata_contig65802:618..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 619..738 +
1622931045.4663272-CDS-H-elongata_contig65802:860..11211622931045.4663272-CDS-H-elongata_contig65802:860..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 861..1121 +
1691679675.4791408-CDS-H-elongata_contig65802:860..11211691679675.4791408-CDS-H-elongata_contig65802:860..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 861..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65802.14165.1

>prot_H-elongata_contig65802.14165.1 ID=prot_H-elongata_contig65802.14165.1|Name=mRNA_H-elongata_contig65802.14165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
MINWHFVMQGILLVSHTFALYLFPFVFLLCTYWFVFFKLQVRCFIFIHCP
LKQGEYFPLEAMVYLMFLIQMCRVGKLLHRQCTSDVFLVDWEKGGRGKGQ
QAPRGGAPGQEGVSVWRQLLVANEWNRLGTKRRVNPMTSLIWMTFILGAG
RLRYSATPQPDLGNTEVGVCYPLCFNLGY*
back to top

mRNA from alignment at H-elongata_contig65802:151..1121+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65802.14165.1 ID=mRNA_H-elongata_contig65802.14165.1|Name=mRNA_H-elongata_contig65802.14165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig65802:151..1121+ (Himanthalia elongata Himel1 dioecious)
ATGATCAACTGGCACTTCGTTATGCAAGGAATCCTGCTCGTGAGCCATAC CTTTGCGTTGTACTTGTTCCCGTTCGTCTTCCTCTTGTGCACGTATTGGT TCGTCTTCTTCAAGCTGCAGGTGAGATGCTTTATTTTCATTCACTGTCCG TTAAAACAAGTAATAAGAAACGCGCTATTAAATTCAAGTATATAAAAAAA ACGATGATACTCCAGGGTGGCGAACTCACACAAATTCGGGCAAAGCGCGC GCGCGCTTCCAGAGGCTGGCATCCCATGTGTGTGAGGTACTACGTGTGCT CGAGTTCAAGAACAACGGCAGGGCGTTGGTGATCGATGATCACTGAAGCT AGTAGGAGAGGTGCACGACATGACATCGTCAACCCGCGTCACCGATCCCC TTAATATCTACCACCAGCAAAGTGTTTTTCTCATGCTTCCGGCGGACCGG GCGGAGTACGGCTCCAAGGGAGAGTATTTCCCGCTGGAGGCAATGGTCTA TCTCATGTTTCTCATCCAGATGTGCCGGGTGGGGAAGCTGCTCCACCGCC AGTGTACATCCGACGTGTTCCTCGTGGATTGGGAGAAGGTAAAGAAAAAC GTATGTCAAGATTTGGTGGTGGGTTTCCGTATTTGACACATCTCTAGGGT AGAGAAAAGCCCAGATATCCACCCCCTAGAGAGTGTGCCTTCATCGCTGT CTCGTCAAAGGGCGGACGCGGCAAAGGGCAACAAGCACCCCGCGGGGGTG CTCCCGGACAAGAGGGTGTTTCTGTCTGGCGTCAGCTTCTGGTGGCTAAC GAGTGGAATCGACTGGGTACGAAGAGGCGCGTCAACCCAATGACATCGTT AATCTGGATGACGTTTATACTAGGGGCGGGACGGCTTCGGTACAGCGCCA CGCCTCAGCCGGATCTGGGAAACACTGAGGTGGGGGTCTGCTACCCGCTT TGTTTCAACCTTGGATACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65802:151..1121+

>mRNA_H-elongata_contig65802.14165.1 ID=mRNA_H-elongata_contig65802.14165.1|Name=mRNA_H-elongata_contig65802.14165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig65802:151..1121+ (Himanthalia elongata Himel1 dioecious)
ATGATCAACTGGCACTTCGTTATGCAAGGAATCCTGCTCGTGAGCCATAC
CTTTGCGTTGTACTTGTTCCCGTTCGTCTTCCTCTTGTGCACGTATTGGT
TCGTCTTCTTCAAGCTGCAGGTGAGATGCTTTATTTTCATTCACTGTCCG
TTAAAACAAATGATCAACTGGCACTTCGTTATGCAAGGAATCCTGCTCGT
GAGCCATACCTTTGCGTTGTACTTGTTCCCGTTCGTCTTCCTCTTGTGCA
CGTATTGGTTCGTCTTCTTCAAGCTGCAGGTGAGATGCTTTATTTTCATT
CACTGTCCGTTAAAACAAGGAGAGTATTTCCCGCTGGAGGCAATGGTCTA
TCTCATGTTTCTCATCCAGATGTGCCGGGTGGGGAAGCTGCTCCACCGCC
AGTGTACATCCGACGTGTTCCTCGTGGATTGGGAGAAGGGAGAGTATTTC
CCGCTGGAGGCAATGGTCTATCTCATGTTTCTCATCCAGATGTGCCGGGT
GGGGAAGCTGCTCCACCGCCAGTGTACATCCGACGTGTTCCTCGTGGATT
GGGAGAAGGGCGGACGCGGCAAAGGGCAACAAGCACCCCGCGGGGGTGCT
CCCGGACAAGAGGGTGTTTCTGTCTGGCGTCAGCTTCTGGTGGCTAACGA
GTGGAATCGACTGGGTACGAAGAGGCGCGTCAACCCAATGACATCGTTAA
TCTGGATGACGTTTATACTAGGGGCGGGACGGCTTCGGTACAGCGCCACG
CCTCAGCCGGATCTGGGAAACACTGAGGTGGGGGTCTGCTACCCGCTTTG
TTTCAACCTTGGATACTAGGGCGGACGCGGCAAAGGGCAACAAGCACCCC
GCGGGGGTGCTCCCGGACAAGAGGGTGTTTCTGTCTGGCGTCAGCTTCTG
GTGGCTAACGAGTGGAATCGACTGGGTACGAAGAGGCGCGTCAACCCAAT
GACATCGTTAATCTGGATGACGTTTATACTAGGGGCGGGACGGCTTCGGT
ACAGCGCCACGCCTCAGCCGGATCTGGGAAACACTGAGGTGGGGGTCTGC
TACCCGCTTTGTTTCAACCTTGGATACTAG
back to top