mRNA_H-elongata_contig65449.14127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65449.14127.1
Unique NamemRNA_H-elongata_contig65449.14127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: D8LK51_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK51_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 4.530e-106
Identity = 157/208 (75.48%), Postives = 175/208 (84.13%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIFGADPTARLSPLFPGAEDMPEGITVTT 956
            +L+DYRLTIEYKHLKQNAPGGV V+PS+NHLR+WYGVIFVRRGHYANGVFKFRVELPPDYND GT P+IRFTSSVFNPMVSP TGE+DL+  FPEW+P + HYMV ALT +KK+FY KDFS  R ANPEAQALFQ++KR FLERVEACVRESQE VY+NEEGSSLRFTEPKPAHDKLREKI G D  A+ S    G  ++      TT
Sbjct:   11 TLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGK-HYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLREKILGTDQAAKSSLPPTGTRELKVSTAATT 217          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A7S2V268_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V268_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.850e-71
Identity = 112/185 (60.54%), Postives = 140/185 (75.68%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIFGAD 887
            +L DY+LTIEYKHLKQ+APGGV V+PS   LR+W+GVIFVRRGHY+ G+FKFRV+LP +YN   T P + FTS VFNP+V P TGE+DL+  +PEW P R HYMV  LT +KK+FY K F     ANP AQ LF +NK  FLE V  CVRES+E ++ N+ GSSL+F+EPKPAH+ LR+ IF ++
Sbjct:   39 ALRDYKLTIEYKHLKQHAPGGVFVIPSFESLRVWWGVIFVRRGHYSKGIFKFRVDLPDEYNGPNTWPKVTFTSRVFNPLVFPQTGELDLKSAYPEWNPER-HYMVTVLTFLKKIFYMKSFDGPNPANPVAQNLFHSNKVEFLEEVNNCVRESKENIFKNDPGSSLKFSEPKPAHESLRKSIFESE 222          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A836CDQ7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 7.300e-65
Identity = 102/184 (55.43%), Postives = 134/184 (72.83%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIFGA 884
            +L+DY++ +EYKHL Q+APGGV V P L+ LR+W+GVIFVRRG YANG+FKF VELP +Y D G  P + F S+VFNP+V P+ GE+DL+   P W PA    M+  +T +KK+FYTKDF+L+   NPEAQ +F++NK  F ER  ACV ES    Y++  GSSL+FTEP+PAHD +  +I GA
Sbjct:   25 ALKDYKIAVEYKHLWQHAPGGVYVTPDLDDLRIWHGVIFVRRGMYANGMFKFSVELPQNYGDAGAWPRLVFMSTVFNPLVKPSNGELDLRLMMPGWNPAGGDCMLKVITYMKKIFYTKDFALAAPPNPEAQRMFRDNKSGFAERAAACVEESLSRRYESPPGSSLKFTEPRPAHDSVAARILGA 208          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A1V9YIR1_9STRA (UBC core domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIR1_9STRA)

HSP 1 Score: 204 bits (520), Expect = 7.220e-59
Identity = 104/240 (43.33%), Postives = 155/240 (64.58%), Query Frame = 3
Query:  297 SNLDNVTRHDRLSLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFS--LSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIF---GADPTARLSPLFPGAEDMPEGITVT-----TEDSEEASGLE 986
            +NL ++ ++   +++DY L IEYKH+KQ+ P G+ V+PS +  RLW+GVIF+ +G Y NG+FKF + LP DYN +GT P + F + VF+P V+P T E+DL   FP W P   HY+V+ L  +K +FYTK+F+  L   ANP A  +F+ +   ++E+++ACV +S E +Y NE GSSLRFT+P PAH+KLR++     G   TA       GA+D P+ + +T     +E+ EE   +E
Sbjct:   29 ANLTSLHQYRTQTMKDYGLMIEYKHMKQHVPSGIYVLPSFDKPRLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVVFYTKVFHPFVNPDTNELDLLPKFPTWDPDL-HYIVSVLVYMKSIFYTKEFASDLRNVANPRALEMFRRHPETYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKLRQEFLQQLGGQDTA-------GADDSPDDVHMTAPIPASEEEEEYKAVE 260          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A7R9W3Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3Q1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 5.440e-58
Identity = 98/178 (55.06%), Postives = 131/178 (73.60%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLR 866
            SL DY++TIEYKHLKQ+APGGV ++PSL+ LR+++GVIFVRRG + NG+FKFRV+LPP YNDV   P I F+S V+NP V+P TGE+D+Q  +P W P R HY+V  LT +KK+FY K F     ANP+A+ L ++N  A+ ++VEACVRESQ  V+ NE   + +F+E +  H  LR
Sbjct:   54 SLRDYKVTIEYKHLKQHAPGGVYLIPSLDDLRVFHGVIFVRRGPFTNGIFKFRVKLPPRYNDVNAWPQIVFSSYVYNPHVNPETGELDVQAAYPTWDPHR-HYLVTVLTYLKKIFYMKGFGEEARANPDARDLARSNPPAYRKKVEACVRESQRSVFVNEPDCTAKFSEDEVCHQVLR 230          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: T0QFC9_SAPDV (UBC core domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QFC9_SAPDV)

HSP 1 Score: 200 bits (509), Expect = 3.120e-57
Identity = 92/196 (46.94%), Postives = 137/196 (69.90%), Query Frame = 3
Query:  297 SNLDNVTRHDRLSLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFS--LSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIF 878
            +NL ++ ++   +++DY L IEYKH+KQ+ P G+ V+PS +  RLW+GVIF+ +G Y NG+FKF + LP DYN +GT P + F + VF+P V+P T E+DL   FP W P   HY+V+ L  +K +FYTK+F+  L   ANP A  +F+ +  +++E+++ACV +S E +Y NE GSSLRFT+P PAH+KLR++  
Sbjct:   31 ANLTSLHQYRTQTMKDYGLMIEYKHMKQHVPSGIYVLPSFDKPRLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVEFYTKVFHPFVNPDTNELDLLPKFPTWDPDL-HYIVSVLVYMKSIFYTKEFASDLRNVANPRALEMFRRHPESYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKLRQEFL 225          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A7S1ZU80_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZU80_TRICV)

HSP 1 Score: 199 bits (507), Expect = 3.470e-57
Identity = 100/180 (55.56%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSR-AANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLRE 869
            +L DY++TIEYKHLKQ+APGGV +VPSL  LRL++GV+FVRRG + NGVFKFRV LPP YND    P I F S V+NP V P TGE+D++  +P W P R HY+V  LT +KK+FY K F      ANPEA+ L + + + +  RVEACVRESQ  V+ NEEG +  F E +  H  LRE
Sbjct:   35 ALRDYKVTIEYKHLKQHAPGGVYLVPSLTDLRLFHGVVFVRRGPFTNGVFKFRVSLPPRYNDFNAHPSIHFGSYVYNPHVDPETGELDVKGAYPTWDPHR-HYLVTVLTYLKKIFYMKTFGTDEPVANPEARELVRRDPKEYRRRVEACVRESQRSVFVNEEGCTAEFHEDRVCHQILRE 213          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A024G8I5_9STRA (UBC core domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 8.770e-57
Identity = 95/196 (48.47%), Postives = 133/196 (67.86%), Query Frame = 3
Query:  303 LDNVTRHDRLSLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFS--LSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIFGA 884
            + ++ R+   +++DY L IEYKHL+Q+ P G+ V+PS ++ R+WYG IF+ +G Y NG+FKF +E+P DYN  GT P I F+SS+F+P VSP T ++DL+  FPEW P   HYMVAALT +K +FY K+F   L   ANP A  LF +    ++  VE CV  S E V+D+E  SS+RFT P PAH+ LR++ F +
Sbjct:   29 MTSLQRYRSQTMKDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWYGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSIVFSSSIFHPYVSPQTRKLDLKAKFPEWDP-ELHYMVAALTFLKSIFYMKEFPEILDNVANPNALKLFHDELETYVTNVERCVSGSLESVFDDEPNSSIRFTRPIPAHENLRKEFFAS 223          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: A0A7S1VY26_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VY26_9STRA)

HSP 1 Score: 196 bits (497), Expect = 9.450e-56
Identity = 94/181 (51.93%), Postives = 130/181 (71.82%), Query Frame = 3
Query:  333 SLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKI 875
            +L DY++TIEYKHL+Q+APGGV ++PSL  LR +YGVIFVRRG + NG+FKF+++LPP YND+ T P I FTS+VFNP V P TGE+D++  +P W P R HY+V  LT +KK+FY K F     AN EA+ L +    A+  +V+ CVR+SQ+ V+ NE+G + +FTE   +H  LR+ +
Sbjct:   46 ALRDYKVTIEYKHLRQHAPGGVYLIPSLTDLRHFYGVIFVRRGPFTNGIFKFQLKLPPTYNDLNTWPTITFTSNVFNPHVHPKTGELDVKSAYPRWDPHR-HYLVTILTFLKKIFYVKTFGPDAKANKEAKKLAEKEPAAYRLKVDECVRDSQKDVFVNEDGCTAKFTEETLSHRVLRDLL 225          
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Match: F0W1H7_9STRA (Uncharacterized protein AlNc14C7G945 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1H7_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.030e-55
Identity = 91/196 (46.43%), Postives = 135/196 (68.88%), Query Frame = 3
Query:  303 LDNVTRHDRLSLEDYRLTIEYKHLKQNAPGGVIVVPSLNHLRLWYGVIFVRRGHYANGVFKFRVELPPDYNDVGTRPVIRFTSSVFNPMVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDF--SLSRAANPEAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLREKIFGA 884
            + ++ R+   +++DY L IEYKHL+Q+ P G+ V+PS ++ R+W+G IF+ +G Y NG+FKF +E+P DYN  GT P I F+++VF+P VSP T ++DL+  FPEW P   HYMVAALT +K +FY K+F  +++  ANP A  LF +    ++  VE CV  S E VY+++  SS+RFT P PAH+ LR++ F +
Sbjct:   29 MTSLQRYRSQTMKDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWFGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSITFSTAVFHPYVSPQTRKLDLKAKFPEWDP-ELHYMVAALTFLKSIFYMKEFPETINNVANPNALKLFHDELETYVTNVERCVSGSLENVYEDDSSSSIRFTRPTPAHENLRKEFFAS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65449.14127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK51_ECTSI4.530e-10675.48UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2V268_9STRA3.850e-7160.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CDQ7_9STRA7.300e-6555.43Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A1V9YIR1_9STRA7.220e-5943.33UBC core domain-containing protein n=1 Tax=Achlya ... [more]
A0A7R9W3Q1_9STRA5.440e-5855.06Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
T0QFC9_SAPDV3.120e-5746.94UBC core domain-containing protein n=2 Tax=Saprole... [more]
A0A7S1ZU80_TRICV3.470e-5755.56Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A024G8I5_9STRA8.770e-5748.47UBC core domain-containing protein n=1 Tax=Albugo ... [more]
A0A7S1VY26_9STRA9.450e-5651.93Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
F0W1H7_9STRA1.030e-5546.43Uncharacterized protein AlNc14C7G945 n=1 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65449contigH-elongata_contig65449:9..2784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D8LK51
Preferred nameAKTIP
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010256,GO:0010498,GO:0010562,GO:0010604,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031371,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0042325,GO:0042327,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045022,GO:0045937,GO:0046483,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070695,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080171,GO:0090304,GO:0098927,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.sperm individualization
EggNOG OGsKOG0429@1,KOG0429@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-06_008200.1
Exons4
Model size1497
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65449.14127.1prot_H-elongata_contig65449.14127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65449 490..1975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.1461663-UTR-H-elongata_contig65449:8..4891622931041.1461663-UTR-H-elongata_contig65449:8..489Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 9..489 -
1691679673.648109-UTR-H-elongata_contig65449:8..4891691679673.648109-UTR-H-elongata_contig65449:8..489Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 9..489 -
1622931041.2224047-UTR-H-elongata_contig65449:1975..20511622931041.2224047-UTR-H-elongata_contig65449:1975..2051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 1976..2051 -
1691679673.6894588-UTR-H-elongata_contig65449:1975..20511691679673.6894588-UTR-H-elongata_contig65449:1975..2051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 1976..2051 -
1622931041.2371318-UTR-H-elongata_contig65449:2294..27841622931041.2371318-UTR-H-elongata_contig65449:2294..2784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 2295..2784 -
1691679673.7013748-UTR-H-elongata_contig65449:2294..27841691679673.7013748-UTR-H-elongata_contig65449:2294..2784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65449 2295..2784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.1582503-CDS-H-elongata_contig65449:489..6511622931041.1582503-CDS-H-elongata_contig65449:489..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 490..651 -
1691679673.6603963-CDS-H-elongata_contig65449:489..6511691679673.6603963-CDS-H-elongata_contig65449:489..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 490..651 -
1622931041.1822927-CDS-H-elongata_contig65449:1414..15311622931041.1822927-CDS-H-elongata_contig65449:1414..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 1415..1531 -
1691679673.6696312-CDS-H-elongata_contig65449:1414..15311691679673.6696312-CDS-H-elongata_contig65449:1414..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 1415..1531 -
1622931041.204315-CDS-H-elongata_contig65449:1804..19751622931041.204315-CDS-H-elongata_contig65449:1804..1975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 1805..1975 -
1691679673.679468-CDS-H-elongata_contig65449:1804..19751691679673.679468-CDS-H-elongata_contig65449:1804..1975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65449 1805..1975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65449.14127.1

>prot_H-elongata_contig65449.14127.1 ID=prot_H-elongata_contig65449.14127.1|Name=mRNA_H-elongata_contig65449.14127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MVSPTTGEVDLQHWFPEWVPARQHYMVAALTQVKKMFYTKDFSLSRAANP
EAQALFQNNKRAFLERVEACVRESQEIVYDNEEGSSLRFTEPKPAHDKLR
EKIFGADPTARLSPLFPGAEDMPEGITVTTEDSEEASGLEPESESHLCR*
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mRNA from alignment at H-elongata_contig65449:9..2784-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65449.14127.1 ID=mRNA_H-elongata_contig65449.14127.1|Name=mRNA_H-elongata_contig65449.14127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2776bp|location=Sequence derived from alignment at H-elongata_contig65449:9..2784- (Himanthalia elongata Himel1 dioecious)
GAACCTTTTTCCTGAGGTTGAGGTTGACACAAGTTCTATCATTTTACCTT TCTCCCCATGCCATGCTTTCGGTATCTGCCAATGCAACTTCCTAGCCGGA CAAGCTTCAAACCCTGAAAGGTAAGCATCATGCCGCACTTTTGTCGTACC ATCGCTACAAACACTACGCGGTGATTTAGCAGCACCTTATAGCGTTGTTA GAATAATCGGATAGTGTTGGTACCCGTCTGGGCTTACTTAAGTTGATCGT CACGCTTACACAATAGTAGGAAAATGATGCTCGCTTATTTATATAAAGCA ACTTAGATAATGTTACCCGCCATGATCGCTTGTCCTTGGAAGATTACCGG CTGACGATCGAGTACAAGCATTTGAAGCAGAACGCTCCCGGCGGAGTAAT CGTCGTCCCAAGCCTCAACCACCTTCGTTTATGGTACGGCGTTATATTTG TACGCAGAGGTCACTACGCCAATGGCGTGTTCAAGTTCAGGTATGTGTTT CTTGGTCCACCGCTATTTCATCAACTACGACAACATTATGCCATCTCGCT TCAGAAGTTGTGTTCGAAATCGAGGAAGCTTTCATGTTTTTTATGTCAAA ATAATTGCAACTTTTGGGAGGTATCCACTCAAAGTCGCACACGAGAGGGC GATTTCGCAAGATTAATCCCGTTGACCTGGCTTCACGTTAAGACCGTCTC TCAATCACATTTCATTCTTGTCGATCAAATCAGGGTTGAGCTGCCACCCG ATTACAATGACGTTGGCACACGGCCTGTCATTCGCTTCACTAGTTCAGTC TTTAATCCCATGGTTTCGCCAACGACCGGAGAAGTTGACCTCCAGCACTG GTTCCCAGAGTGGGTTCCCGCGAGGCAGCACTATATGGTGGCCGCACTTA CTCAAGTCAAGAAGATGTTCTACACAAAGGACTTTTCCCTTTCTCGCGCT GCCAATCCTGAGGCGCAGGCACTTTTTCAGGTAAATATCATCAGCAAGCG TCCAAAGTGATCATACGACTTTTAGCACCCGATGGCGGTATTGTTAAACG GCGTATCGTTCCAACTGGCTCAAAAATCATTTTTTCAGTCATATTGAGAG ACAAAGGTCTCTCCATTATAAATATGGTGCGCTATTTCTCTGGGTCCACT CCTCTACACCATCTGCACGAAAAGCTTGTGGAGCGTAGTAGCCCATGTGG CCAAGCACGTGCTGAGTTAGAGTCTCAAAAGCCCTGACTTGACCTCATCT CAGAATAACAAACGGGCGTTCCTCGAGAGAGTTGAAGCCTGCGTCCGCGA GAGCCAAGAGATCGTATATGATAATGAAGAAGGGTCCAGCCTGCGCTTCA CTGAGCCCAAGCCTGCCCACGTGAGTTGGTACACTGTTGCGATTTTGAAC CGCTCGAAGCTGTTACTATAGACTCCATGGGTGGGTTGGGTCAGCCACCA TATATCCAGTATATACGTGGTTTCAGAGAAACGGCTATAGTACTCTACAT GAAATCAACATGATTCGCTGTTTTATTCATTCTGACATTGTTGTATCATA GCTTCAGCCCAGGGTAGGCCAAAGGAAATAGATGAACGCTTTGCGGGACC TTTGTTGACCGCAAGCGAGATCTACCAGAGTTCTGGCATTTTCCGTTTCA TATTAAAAAAATATATCGTTGTTGTCGAACGCTATCGATTTCGAAACAAG GTCGCGCCTGTGGTGTGTGTTACCCATGATATATTTCGCAATGTACTTCA GAACGCCTCTTTATTAAAGGCAGGTTTCCTATCATGTTCTTGGAAGGTAG CGCAGGGTTGTGCAAGATGATTCGCAGTTTGATGCATGTCGCTGAGAAAA ATCATGATTCCTCCCCGCTTCTTCAATCATCTGCGTAATTCTAGGAGTTG TGGGATCAAATAAACTTGGAGCGCAGTTCTATCTTGGATTTGAATAATAA TTTCCAATCCATGGCGAGAAAATTTCATGCGGCAAACGGCTTCGTTTCGT TTTTTTTTGTGAGGTAAACACTAGGCCGAGGCCCCGTCTGAGCGTCAAAT AACGAAGGAAACGTACGGAAGTTCCATGATGGATTATTCGATCAATCGTT GCCATTGTTCCCAAATGCTTTTGCCTCGATCAGGACAAGTTGAGGGAGAA AATATTTGGTGCCGACCCAACCGCGAGATTATCACCATTGTTTCCTGGCG CAGAAGATATGCCGGAGGGCATCACCGTCACGACCGAGGATTCGGAAGAG GCGTCTGGGTTAGAACCCGAGTCCGAATCACATTTGTGTCGATAACTTGC GATGGCCGAAACGGCTGAATATCTGTATGTGCACAAACGCCGACTGCAAG CGCAGCACCTCTCTATCCCACGTCGGTGGCTTGGTATTTCGGGGTCAAAT GGTAACCTGTTATATTTTCTATCGAATGTTGGATATCAAGCTGTGGATAT TTACTTCATAAATGTGTTTTTAATTTATCTCGGGCGTTTTGGGCATTTGT GGTTGCGTCACATGCTATGCCCCCGAACGAGACCAATATTGCGTTTATTG TGCTGTTCGCGTTCTTAGGTGTAAATAAATATACTACGGTGTTGTATACA TTGAAGCTTAACCCCGCATATCGTAATGATGGTTTGATTTTTTTTATTGA TTGAATTCTCACATAAGCTGATGTCAAAATCCAGCGCGTGGTGACGGTAG AAAATATACACCTTTCGGAAAGGAGAAAAACGTTCAAGGTACTCTCCAAT ACAAAAGGAAACGACAATAATGGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig65449:9..2784-

>mRNA_H-elongata_contig65449.14127.1 ID=mRNA_H-elongata_contig65449.14127.1|Name=mRNA_H-elongata_contig65449.14127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig65449:9..2784- (Himanthalia elongata Himel1 dioecious)
ATGGTTTCGCCAACGACCGGAGAAGTTGACCTCCAGCACTGGTTCCCAGA
GTGGGTTCCCGCGAGGCAGCACTATATGGTGGCCGCACTTACTCAAGTCA
AGAAGATGTTCTACACAAAGGACTTTTCCCTTTCTCGCGCTGCCAATCCT
GAGGCGCAGGCACTTTTTCAGATGGTTTCGCCAACGACCGGAGAAGTTGA
CCTCCAGCACTGGTTCCCAGAGTGGGTTCCCGCGAGGCAGCACTATATGG
TGGCCGCACTTACTCAAGTCAAGAAGATGTTCTACACAAAGGACTTTTCC
CTTTCTCGCGCTGCCAATCCTGAGGCGCAGGCACTTTTTCAGAATAACAA
ACGGGCGTTCCTCGAGAGAGTTGAAGCCTGCGTCCGCGAGAGCCAAGAGA
TCGTATATGATAATGAAGAAGGGTCCAGCCTGCGCTTCACTGAGCCCAAG
CCTGCCCACAATAACAAACGGGCGTTCCTCGAGAGAGTTGAAGCCTGCGT
CCGCGAGAGCCAAGAGATCGTATATGATAATGAAGAAGGGTCCAGCCTGC
GCTTCACTGAGCCCAAGCCTGCCCACGACAAGTTGAGGGAGAAAATATTT
GGTGCCGACCCAACCGCGAGATTATCACCATTGTTTCCTGGCGCAGAAGA
TATGCCGGAGGGCATCACCGTCACGACCGAGGATTCGGAAGAGGCGTCTG
GGTTAGAACCCGAGTCCGAATCACATTTGTGTCGATAAGACAAGTTGAGG
GAGAAAATATTTGGTGCCGACCCAACCGCGAGATTATCACCATTGTTTCC
TGGCGCAGAAGATATGCCGGAGGGCATCACCGTCACGACCGAGGATTCGG
AAGAGGCGTCTGGGTTAGAACCCGAGTCCGAATCACATTTGTGTCGATAA
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