mRNA_H-elongata_contig6512.14102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6512.14102.1
Unique NamemRNA_H-elongata_contig6512.14102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.450e-59
Identity = 175/391 (44.76%), Postives = 198/391 (50.64%), Query Frame = 1 
Query:  418 GGRPPLVRKRSLTVALDADPGGPALCPSPRGRRRSVDKALDTKDGV-------PDVSSAGV-ESPSHPPRVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVGGVGPRECSLSSPPHDRFHHH-PGHTM-------------------------------------DVEWIPNETTHTAALSASTAATPSPVPSASSA--------LTGSGLGCPQSPFAPSPGHEYLRIGSM--RGAPPQSPSPRRAPPSPAQAPGSAGLRRPGTRRLDGRRLARRV--HNLGAGKGAYVGGGAGEIISGGGGGVGGTYESDYD--------------------SDLSDLSGYSAVGSLERQLQQDTFFELDEALWVVVTRREV 1356
            GGRPPLVRKRSLTVA+DADPGGP +CPSPRGRRRSV+   DTKD         PD ++  + ESPS PPR++   AVGN+GVAVVGG  G     CFSP  +YPS         G   GG   RE  L S  HD       GH M                                     DVEWIPNE      +      TPSPV S +SA           + +G P SPF PSPG EY R+G +  RG+   SPSPRRAPPSPA APGSAG+RR GTRRL G R A R      G  KG YVG G                                         S++S  S YSA+GSLERQLQQDTFFELDE+LW VVTRRE+
Sbjct:  304 GGRPPLVRKRSLTVAMDADPGGPVMCPSPRGRRRSVEGVFDTKDSCTSGGGSNPDGTTTRLLESPSRPPRLM---AVGNSGVAVVGGGVGA----CFSPLVSYPSSH-------GDRAGGG--REYPLRSQAHDNLSVRVSGHAMAGGGSNVNPVETKTDSSSAGVGLETAAAGACVSKNPMDVEWIPNENAQAGGI----LPTPSPVTSVASAPPAMVQPSANANAMGRPPSPFPPSPGREYRRVGGVLSRGST-HSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSATRGVRSRPGVSKGVYVGAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREI 673
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BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.610e-52
Identity = 156/343 (45.48%), Postives = 178/343 (51.90%), Query Frame = 1 
Query:  463 LDADPGGPALCPSPRGRRRSVDKALDTKDGV-------PDVSSAGV-ESPSHPPRVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVGGVGPRECSLSSPPHDRFHHHPGHTMDVEWIPNETTHTAALSASTAATPSPVPSASSALTGSGLGCPQSPFAPSPGHEYLRIGSM--RGAPPQSPSPRRAPPSPAQAPGSAGLRRPGTRRLDGRRLARRV--HNLGAGKGAYVGGGAGEIISGGGGGVGGT------------------------------YESDYDSDLSDLSGYS---AVGSLERQLQQDTFFELDEALWVVVTRREV 1356
            +DADPGGPA+CPSPRGRRRSV+   DTKD         PD ++  + ESPS PPR++   AVGNNGVAVVGG  GG  G CFSP  +YPS       G          RE  L S  HD+F                               S  PSA++    + +G P SPF PSPG EY R G +  RG+   SPSPRRAPPSPA APGSAG+RR GTRRL G R A R      G  KG YVG G                                             YESDYDSDLS++S YS   A+GSLERQLQQDTFFELDE+LW VVTRRE+
Sbjct:    1 MDADPGGPAMCPSPRGRRRSVEGVFDTKDSSTSGGGSNPDGTTTRLLESPSRPPRLM---AVGNNGVAVVGGGVGGGVGTCFSPLVSYPSSHGDRASGG---------REYPLRSQAHDKF-------------------------------SVTPSANA----NAMGRPPSPFPPSPGREYRRAGGVLSRGST-HSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSAPRGVRSRPGVSKGVYVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYESDYDSDLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREI 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2W7_9PHAE1.450e-5944.76MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0Z5_ECTSI1.610e-5245.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6512contigH-elongata_contig6512:352..1707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue4.6e-50
Seed eggNOG ortholog2880.D7G0Z5
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1356
Cds size1356
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.0901012-CDS-H-elongata_contig6512:351..17071622931038.0901012-CDS-H-elongata_contig6512:351..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6512 352..1707 -
1691679672.3058028-CDS-H-elongata_contig6512:351..17071691679672.3058028-CDS-H-elongata_contig6512:351..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6512 352..1707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6512.14102.1prot_H-elongata_contig6512.14102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6512 352..1707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6512.14102.1

>prot_H-elongata_contig6512.14102.1 ID=prot_H-elongata_contig6512.14102.1|Name=mRNA_H-elongata_contig6512.14102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=452bp
GGGSSSGGISGGVARVRIRGGGIDITSLLSEDTDFERGPSSREDRALARG
DPSVHHPGGGDSGDGVWAGESTSAGEASSSTSTGYQRQDSTGSVSSVGAG
EFTYPSIGGASGNGGGISRSGTPSSNSHTGSEHFRGDGPGGRPPLVRKRS
LTVALDADPGGPALCPSPRGRRRSVDKALDTKDGVPDVSSAGVESPSHPP
RVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVG
GVGPRECSLSSPPHDRFHHHPGHTMDVEWIPNETTHTAALSASTAATPSP
VPSASSALTGSGLGCPQSPFAPSPGHEYLRIGSMRGAPPQSPSPRRAPPS
PAQAPGSAGLRRPGTRRLDGRRLARRVHNLGAGKGAYVGGGAGEIISGGG
GGVGGTYESDYDSDLSDLSGYSAVGSLERQLQQDTFFELDEALWVVVTRR
EV
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mRNA from alignment at H-elongata_contig6512:352..1707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6512.14102.1 ID=mRNA_H-elongata_contig6512.14102.1|Name=mRNA_H-elongata_contig6512.14102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-elongata_contig6512:352..1707- (Himanthalia elongata Himel1 dioecious)
GGCGGCGGCAGCAGCAGCGGGGGAATAAGTGGCGGTGTCGCTCGCGTGCG
CATCCGTGGCGGTGGGATCGATATCACCTCTCTGCTCTCCGAGGACACAG
ACTTCGAGCGTGGCCCCTCTAGCCGTGAAGACCGCGCACTGGCCCGCGGC
GACCCATCCGTGCACCACCCCGGGGGGGGTGATTCGGGCGACGGGGTATG
GGCTGGGGAAAGCACTTCGGCTGGCGAAGCATCTTCCTCCACATCCACTG
GGTACCAAAGACAGGACAGCACTGGGTCGGTGTCTTCCGTGGGGGCGGGG
GAGTTCACGTATCCCTCAATCGGTGGCGCCAGCGGGAACGGTGGGGGCAT
ATCTCGTTCGGGAACCCCTTCTTCAAACTCTCACACGGGAAGCGAACACT
TTCGTGGGGATGGCCCTGGCGGCAGACCCCCCCTCGTTCGCAAAAGGTCC
CTGACCGTCGCGCTGGACGCCGATCCAGGCGGACCCGCGTTGTGTCCCTC
TCCCCGGGGCCGTCGTCGAAGCGTGGACAAGGCATTAGACACGAAGGACG
GCGTCCCAGATGTCTCCTCAGCGGGGGTAGAGTCTCCTTCGCATCCGCCA
CGGGTTCTGCCAGCTCCGGCGGTGGGTAACAACGGTGTGGCCGTGGTGGG
TGGTAGTAGCGGAGGCAGTGGCGGGGGGTGTTTCTCTCCCCATCCCGCGT
ACCCGAGCCCTCGTGCCGGAATTATCTGCGGCGTAGGGGGGCTAGTGGGC
GGGGTTGGACCTCGGGAGTGCTCGCTTTCCTCACCCCCCCACGACCGCTT
CCACCACCACCCCGGGCACACCATGGACGTGGAATGGATCCCCAACGAGA
CGACGCACACCGCGGCGCTATCGGCGTCTACTGCGGCGACGCCGTCTCCC
GTGCCGTCGGCATCATCTGCGCTTACGGGGTCGGGTCTGGGGTGCCCCCA
GAGCCCATTCGCCCCTTCCCCCGGGCACGAGTACCTGAGGATTGGATCCA
TGCGAGGAGCGCCGCCACAGTCTCCTTCACCGAGGAGGGCCCCGCCGTCT
CCAGCGCAGGCCCCGGGGAGCGCTGGTCTTCGAAGGCCGGGCACGAGAAG
ACTTGACGGCAGGCGACTGGCGCGCAGGGTACACAACTTGGGAGCAGGGA
AAGGGGCTTACGTGGGAGGCGGAGCTGGCGAGATTATCTCCGGCGGAGGC
GGGGGGGTCGGGGGGACGTACGAGTCTGACTACGACTCCGACCTGTCAGA
CCTGAGCGGGTACAGCGCTGTGGGCTCGCTAGAGCGGCAGCTTCAGCAGG
ACACCTTCTTCGAGCTGGACGAGGCGCTTTGGGTCGTGGTCACCCGGCGG
GAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig6512:352..1707-

>mRNA_H-elongata_contig6512.14102.1 ID=mRNA_H-elongata_contig6512.14102.1|Name=mRNA_H-elongata_contig6512.14102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2712bp|location=Sequence derived from alignment at H-elongata_contig6512:352..1707- (Himanthalia elongata Himel1 dioecious)
GGCGGCGGCAGCAGCAGCGGGGGAATAAGTGGCGGTGTCGCTCGCGTGCG
CATCCGTGGCGGTGGGATCGATATCACCTCTCTGCTCTCCGAGGACACAG
ACTTCGAGCGTGGCCCCTCTAGCCGTGAAGACCGCGCACTGGCCCGCGGC
GACCCATCCGTGCACCACCCCGGGGGGGGTGATTCGGGCGACGGGGTATG
GGCTGGGGAAAGCACTTCGGCTGGCGAAGCATCTTCCTCCACATCCACTG
GGTACCAAAGACAGGACAGCACTGGGTCGGTGTCTTCCGTGGGGGCGGGG
GAGTTCACGTATCCCTCAATCGGTGGCGCCAGCGGGAACGGTGGGGGCAT
ATCTCGTTCGGGAACCCCTTCTTCAAACTCTCACACGGGAAGCGAACACT
TTCGTGGGGATGGCCCTGGCGGCAGACCCCCCCTCGTTCGCAAAAGGTCC
CTGACCGTCGCGCTGGACGCCGATCCAGGCGGACCCGCGTTGTGTCCCTC
TCCCCGGGGCCGTCGTCGAAGCGTGGACAAGGCATTAGACACGAAGGACG
GCGTCCCAGATGTCTCCTCAGCGGGGGTAGAGTCTCCTTCGCATCCGCCA
CGGGTTCTGCCAGCTCCGGCGGTGGGTAACAACGGTGTGGCCGTGGTGGG
TGGTAGTAGCGGAGGCAGTGGCGGGGGGTGTTTCTCTCCCCATCCCGCGT
ACCCGAGCCCTCGTGCCGGAATTATCTGCGGCGTAGGGGGGCTAGTGGGC
GGGGTTGGACCTCGGGAGTGCTCGCTTTCCTCACCCCCCCACGACCGCTT
CCACCACCACCCCGGGCACACCATGGACGTGGAATGGATCCCCAACGAGA
CGACGCACACCGCGGCGCTATCGGCGTCTACTGCGGCGACGCCGTCTCCC
GTGCCGTCGGCATCATCTGCGCTTACGGGGTCGGGTCTGGGGTGCCCCCA
GAGCCCATTCGCCCCTTCCCCCGGGCACGAGTACCTGAGGATTGGATCCA
TGCGAGGAGCGCCGCCACAGTCTCCTTCACCGAGGAGGGCCCCGCCGTCT
CCAGCGCAGGCCCCGGGGAGCGCTGGTCTTCGAAGGCCGGGCACGAGAAG
ACTTGACGGCAGGCGACTGGCGCGCAGGGTACACAACTTGGGAGCAGGGA
AAGGGGCTTACGTGGGAGGCGGAGCTGGCGAGATTATCTCCGGCGGAGGC
GGGGGGGTCGGGGGGACGTACGAGTCTGACTACGACTCCGACCTGTCAGA
CCTGAGCGGGTACAGCGCTGTGGGCTCGCTAGAGCGGCAGCTTCAGCAGG
ACACCTTCTTCGAGCTGGACGAGGCGCTTTGGGTCGTGGTCACCCGGCGG
GAGGTAGGCGGCGGCAGCAGCAGCGGGGGAATAAGTGGCGGTGTCGCTCG
CGTGCGCATCCGTGGCGGTGGGATCGATATCACCTCTCTGCTCTCCGAGG
ACACAGACTTCGAGCGTGGCCCCTCTAGCCGTGAAGACCGCGCACTGGCC
CGCGGCGACCCATCCGTGCACCACCCCGGGGGGGGTGATTCGGGCGACGG
GGTATGGGCTGGGGAAAGCACTTCGGCTGGCGAAGCATCTTCCTCCACAT
CCACTGGGTACCAAAGACAGGACAGCACTGGGTCGGTGTCTTCCGTGGGG
GCGGGGGAGTTCACGTATCCCTCAATCGGTGGCGCCAGCGGGAACGGTGG
GGGCATATCTCGTTCGGGAACCCCTTCTTCAAACTCTCACACGGGAAGCG
AACACTTTCGTGGGGATGGCCCTGGCGGCAGACCCCCCCTCGTTCGCAAA
AGGTCCCTGACCGTCGCGCTGGACGCCGATCCAGGCGGACCCGCGTTGTG
TCCCTCTCCCCGGGGCCGTCGTCGAAGCGTGGACAAGGCATTAGACACGA
AGGACGGCGTCCCAGATGTCTCCTCAGCGGGGGTAGAGTCTCCTTCGCAT
CCGCCACGGGTTCTGCCAGCTCCGGCGGTGGGTAACAACGGTGTGGCCGT
GGTGGGTGGTAGTAGCGGAGGCAGTGGCGGGGGGTGTTTCTCTCCCCATC
CCGCGTACCCGAGCCCTCGTGCCGGAATTATCTGCGGCGTAGGGGGGCTA
GTGGGCGGGGTTGGACCTCGGGAGTGCTCGCTTTCCTCACCCCCCCACGA
CCGCTTCCACCACCACCCCGGGCACACCATGGACGTGGAATGGATCCCCA
ACGAGACGACGCACACCGCGGCGCTATCGGCGTCTACTGCGGCGACGCCG
TCTCCCGTGCCGTCGGCATCATCTGCGCTTACGGGGTCGGGTCTGGGGTG
CCCCCAGAGCCCATTCGCCCCTTCCCCCGGGCACGAGTACCTGAGGATTG
GATCCATGCGAGGAGCGCCGCCACAGTCTCCTTCACCGAGGAGGGCCCCG
CCGTCTCCAGCGCAGGCCCCGGGGAGCGCTGGTCTTCGAAGGCCGGGCAC
GAGAAGACTTGACGGCAGGCGACTGGCGCGCAGGGTACACAACTTGGGAG
CAGGGAAAGGGGCTTACGTGGGAGGCGGAGCTGGCGAGATTATCTCCGGC
GGAGGCGGGGGGGTCGGGGGGACGTACGAGTCTGACTACGACTCCGACCT
GTCAGACCTGAGCGGGTACAGCGCTGTGGGCTCGCTAGAGCGGCAGCTTC
AGCAGGACACCTTCTTCGAGCTGGACGAGGCGCTTTGGGTCGTGGTCACC
CGGCGGGAGGTA
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