mRNA_H-elongata_contig64959.14082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64959.14082.1
Unique NamemRNA_H-elongata_contig64959.14082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A6H5K1Q4_9PHAE (Protein xylosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q4_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 1.330e-111
Identity = 166/238 (69.75%), Postives = 185/238 (77.73%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGGSKG-QVSLCLSL-EDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSPTSRRQGSKLMPL 708
            YVGSQWLAMPP  ARWLMED  LVPKYREY+KHIVVADENFLPT+ KNSPFC   VSSNLVHVQFD+YEHTLDREDRR DKCLMPNPDHCGRSPATMT+DYLSVLEHS MLFARKFDPKD +VF VLD VR G Q WR+GPTFD ++IRS      S G    LCLS+    P++  SP + EA+MV+CS  DP Q+FKLGPCSSDG LELGEGG G+M+    S + R     +M L
Sbjct:  177 YVGSQWLAMPPSVARWLMEDTGLVPKYREYAKHIVVADENFLPTVIKNSPFCGNLVSSNLVHVQFDKYEHTLDREDRRADKCLMPNPDHCGRSPATMTVDYLSVLEHSSMLFARKFDPKDSQVFDVLDMVRDGGQAWREGPTFDYISIRSPIIHSSSAGADEHLCLSVGPPPPKQPGSPPNTEAVMVKCSGADPRQIFKLGPCSSDGDLELGEGGNGYMKSARGSMSGRAPSCSIMSL 414          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: D8LMY0_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY0_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 1.190e-99
Identity = 149/203 (73.40%), Postives = 164/203 (80.79%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGGSKGQVS-LCLSL-EDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPC 603
            YVGSQWLAMPP  ARWLMED  LVPKYREY+KHIVVADENFLPT+ KNSPFC   VSSNLVHVQFD+YEHTLDREDRR DKCLMPNPDHCGRSPATMT+DYLSVLEHS MLFARKF+PKD +VF VLD VR G Q WR+GPTFD ++IRS      S G    LCLS+    P+K  SP + EA+MV+CS  DP Q+FKLGPC
Sbjct:  323 YVGSQWLAMPPSVARWLMEDTGLVPKYREYAKHIVVADENFLPTVIKNSPFCGNLVSSNLVHVQFDKYEHTLDREDRRADKCLMPNPDHCGRSPATMTVDYLSVLEHSSMLFARKFNPKDSQVFDVLDMVRDGGQAWREGPTFDYISIRSPIIHSSSGGAAEHLCLSVGPPPPKKPGSPPNTEAVMVKCSGADPRQIFKLGPC 525          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A8J2SSV4_9STRA (Protein xylosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.570e-36
Identity = 85/234 (36.32%), Postives = 126/234 (53.85%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLM------EDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQP--WRKGPTFDSVAIRSVARWGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSPT 675
            Y+GSQW+ +    A +        + +S   +Y  Y ++ +VADENF  T+ KNSP C    + N +HVQFD++E     E    +KCL P+P HCGRSP T+TLDY+ VLE    LFARKFD   D ++   +D  RA +    + + P      IR V     ++  V LC+S+ +   +    S  E  +  C  +D  Q F +GPCS+DGH+EL  G +  ++  + SP+
Sbjct:  290 YMGSQWMVITRDFAAYATGRESPRQRRSFASQYAPYGRYTMVADENFFTTVLKNSPMCHKHYNQNFLHVQFDQWESDKV-EGPAQNKCLQPDPRHCGRSPTTLTLDYMPVLELGGALFARKFDATYDAKILDAIDANRALQDTAGYSEKPRQYFENIRFVRE---AQNGVELCVSMSNQAER----SIYEVSLKPCDRRDASQRFNIGPCSTDGHIELRSGRQALVKPGDHSPS 515          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S2AW29_9STRA (Protein xylosyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AW29_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.390e-35
Identity = 84/227 (37.00%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQP-----WRKGPT------------FDSVAIRSVARWGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLEL 627
            +VGSQWL +    A +L+   +   KYR Y KH +VADEN+  T+ +NS FC    ++N   VQFD +EH        ++KCL PNPDHCGRSP  + L +L VLE S  +FARKFDP+ D      +D +R+ +       W  G              F+ V I + A   G     S+C+ L       S  ++++A +  C+     Q F LGPCSSDG L+ 
Sbjct:  194 HVGSQWLLISSAFANYLVSRGNFADKYRVYGKHTMVADENYFVTVLRNSEFCHTHENTNFAQVQFDEWEHDK-ANGPNVNKCLQPNPDHCGRSPTIIDLAFLPVLELSGAMFARKFDPEIDHRSIDAIDIMRSRDSSSNSGSWSLGXXXXXXDQGLKTRHFEDVVITTTA---GPLTSQSMCVDL-------SQQANSKARVTSCTRGKLSQHFSLGPCSSDGSLDF 409          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S2UAF3_9STRA (Protein xylosyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAF3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.920e-35
Identity = 93/253 (36.76%), Postives = 127/253 (50.20%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQPWRKGP--------------TFDSVAIRSVARWGGSKGQVSLCLSLEDSPRK------------GSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSP 672
            Y  SQW  +    A++L +    + V  +  Y +H+ +ADE F  T+  N+PFC    + N +H+QFDR+E+ +D E R   KCLMP PDHCGRSP TMTLDYLSVLE S  +FARKFD   D EV   +D +RA E+   +G               +F    +  VA+   +  +V LCL L D+  +             +     E   V   +   H  +++GPCSSDG LE    GE  M     SP
Sbjct:  392 YTASQWFVLSREFAKYLADPLPGTFVFDFLPYVEHVAIADETFFGTVLMNTPFCHKHHNDNFLHLQFDRWENEVDEEKRDPRKCLMPKPDHCGRSPTTMTLDYLSVLELSEQMFARKFDDDMDPEVKNAVDIIRAREERALRGEKEATEAISRETVNVSFSGHGVLIVAQETVND-EVPLCLGLGDAKNQVRLVPCFFDWVPPTFVPGWETGAVIADETQWHNRWEIGPCSSDGTLERLANGEMNMTPGAYSP 643          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7R9Z3B0_9STRA (Protein xylosyltransferase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3B0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.710e-33
Identity = 90/241 (37.34%), Postives = 129/241 (53.53%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKF-DPKDEEVFQVLDRVRAGEQPW----------RKGP--TFDSVAIRSVAR------------WGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGE 642
            Y  SQW  +    A ++   K  +LV  + EY++H VVADE+F  T+ ++S +C    + N +H+QFDR+E+ L+   R   KC+MP+P+HCGRSP TMT+DYL  LE S  LFARKF D  D +V  +LD  RA E+            + GP  +F+   I  VA              G S+ +V L     D   +  +P+     +V+  +   H  ++LGPCSSDG+LE  E GE
Sbjct:  139 YTSSQWFIISREFAEYIAVAKPGTLVRDFLEYTEHAVVADESFFGTVLRHSSYCTKHHNDNFLHLQFDRWENELETSVRDERKCVMPDPNHCGRSPTTMTMDYLPNLELSDALFARKFIDGVDSKVKDILDMKRAKEEDLLRNSSDMHAVKSGPDTSFEGHGILIVATETINETTPLCLGLGESQNKVRLVPCFHDWVPQTLAPNWETGAVVQ-EETLIHNRWELGPCSSDGNLERMEDGE 378          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S1UEA5_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEA5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.970e-32
Identity = 64/136 (47.06%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHM--LFARKFDPK-DEEVFQVLDRVRAG 399
            Y+GSQW+ +    A +++ D  L   Y +Y+K+IV+ADENF PT+  NSPFC   V  NL H+QFD +E +  + D R  KCL P    CGRSP TMTLDYL +L+ +     FARKF+P  D EV + +D +R G
Sbjct:   34 YLGSQWVTLSRDFAYYVVSDTGLAKPYADYAKNIVIADENFFPTVLMNSPFCHTVVRENLHHIQFDEWESSKVQPDTR--KCLQPGNSTCGRSPTTMTLDYLPILDLASKEDFFARKFEPSVDAEVVKYVDDIRFG 167          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A835ZA88_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA88_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.330e-31
Identity = 62/115 (53.91%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    7 GSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFD 351
            GSQW    P  ARWL+ED +LV  +  Y+ H+ VADE F PT+   SPFC   V  NL HV+F R     D   R  ++CLMP+P HCGRSP  +T DYL VLEHS  LFARKFD
Sbjct:  257 GSQWFVGTPAYARWLLEDAALVAPFAAYAAHVAVADEIFFPTLLLASPFCGGVVHDNLHHVEFGRRSDGGDA--RAAERCLMPDPRHCGRSPIAITRDYLPVLEHSGKLFARKFD 369          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: B8LEP4_THAPS (Protein xylosyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEP4_THAPS)

HSP 1 Score: 114 bits (286), Expect = 1.850e-28
Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDRE-DRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEV 369
            Y  SQW  +    A +L      S V  Y +Y +H+VVADE F  T+ +N+ FC+   + N +H+QFDR+E+  + E D+R  KCL  N DHCGRSP TMTLDYL VLE S  LFARKFD   EEV
Sbjct:   28 YTSSQWFIISRDFAWYLASPPKDSFVDYYLDYIEHVVVADEAFFGTVIRNTHFCSTLHNDNFLHIQFDRWENEAEGERDQR--KCLFKNRDHCGRSPTTMTLDYLPVLELSGDLFARKFDDVGEEV 151          
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S1UYD6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYD6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.350e-27
Identity = 83/252 (32.94%), Postives = 123/252 (48.81%), Query Frame = 1
Query:    1 YVGSQWLAMPPVAARWL--MEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGG--------SKGQVSLCLSLEDSPRKGSS------------PSSAEAMMVRCSDKDP---HQVFKLGPCSSDGHLE-LGEGGEGFMRVREPSPT 675
            Y  SQW  +    A +L   E  S V  Y +Y +H+VVADE F  T+ +++ FC    + + +H++FDR+E  L   +R   KC+M   DHCGRSP TMT+DYL V+E +  LFARKFD + D +V  V+D  R  ++    G      A  +     G        +K    LC+ + +   KG+             P+ A+        ++    H  + LGPCS+DG L+ L E  E  M   + SP+
Sbjct:   37 YTSSQWFIISREFAYYLGKAEPGSFVHNYLDYIQHVVVADETFFGTVLRSTEFCLKHNNWHFLHLEFDRWESDLGESERDERKCMMKRKDHCGRSPTTMTMDYLDVMELTGDLFARKFDERTDSQVKDVIDERRHQQELELTGQIEPEEAFNTDFEGHGVLVLAKETAKTDKPLCMGIGE---KGNQLKLMPCFFDEIVPALADGWETGAVIEEEILLHNKWTLGPCSTDGKLQRLYETAEMAMTPGKYSPS 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K1Q4_9PHAE1.330e-11169.75Protein xylosyltransferase n=1 Tax=Ectocarpus sp. ... [more]
D8LMY0_ECTSI1.190e-9973.40Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A8J2SSV4_9STRA1.570e-3636.32Protein xylosyltransferase n=1 Tax=Pelagomonas cal... [more]
A0A7S2AW29_9STRA1.390e-3537.00Protein xylosyltransferase n=1 Tax=Dictyocha specu... [more]
A0A7S2UAF3_9STRA1.920e-3536.76Protein xylosyltransferase n=1 Tax=Attheya septent... [more]
A0A7R9Z3B0_9STRA2.710e-3337.34Protein xylosyltransferase n=1 Tax=Pseudictyota du... [more]
A0A7S1UEA5_9STRA1.970e-3247.06Protein xylosyltransferase (Fragment) n=1 Tax=Phae... [more]
A0A835ZA88_9STRA7.330e-3153.91Protein xylosyltransferase (Fragment) n=1 Tax=Trib... [more]
B8LEP4_THAPS1.850e-2850.00Protein xylosyltransferase (Fragment) n=1 Tax=Thal... [more]
A0A7S1UYD6_9STRA9.350e-2732.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64959contigH-elongata_contig64959:576..2919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue3.2e-76
Seed eggNOG ortholog2880.D8LMY0
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons5
Model size708
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64959.14082.1prot_H-elongata_contig64959.14082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64959 600..2919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.2214642-UTR-H-elongata_contig64959:575..5991622931035.2214642-UTR-H-elongata_contig64959:575..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64959 576..599 +
1691679671.0216248-UTR-H-elongata_contig64959:575..5991691679671.0216248-UTR-H-elongata_contig64959:575..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64959 576..599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.2348804-CDS-H-elongata_contig64959:599..7671622931035.2348804-CDS-H-elongata_contig64959:599..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 600..767 +
1691679671.0346408-CDS-H-elongata_contig64959:599..7671691679671.0346408-CDS-H-elongata_contig64959:599..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 600..767 +
1622931035.252009-CDS-H-elongata_contig64959:1351..14881622931035.252009-CDS-H-elongata_contig64959:1351..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 1352..1488 +
1691679671.045319-CDS-H-elongata_contig64959:1351..14881691679671.045319-CDS-H-elongata_contig64959:1351..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 1352..1488 +
1622931035.2693744-CDS-H-elongata_contig64959:2190..24001622931035.2693744-CDS-H-elongata_contig64959:2190..2400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2191..2400 +
1691679671.0571198-CDS-H-elongata_contig64959:2190..24001691679671.0571198-CDS-H-elongata_contig64959:2190..2400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2191..2400 +
1622931035.282916-CDS-H-elongata_contig64959:2442..25071622931035.282916-CDS-H-elongata_contig64959:2442..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2443..2507 +
1691679671.067444-CDS-H-elongata_contig64959:2442..25071691679671.067444-CDS-H-elongata_contig64959:2442..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2443..2507 +
1622931035.2979004-CDS-H-elongata_contig64959:2815..29191622931035.2979004-CDS-H-elongata_contig64959:2815..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2816..2919 +
1691679671.0765405-CDS-H-elongata_contig64959:2815..29191691679671.0765405-CDS-H-elongata_contig64959:2815..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64959 2816..2919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64959.14082.1

>prot_H-elongata_contig64959.14082.1 ID=prot_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSS
NLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHS
HMLFARKFDPKDEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGGSK
GQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLE
LGEGGEGFMRVREPSPTSRRQGSKLMPL
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mRNA from alignment at H-elongata_contig64959:576..2919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64959.14082.1 ID=mRNA_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2344bp|location=Sequence derived from alignment at H-elongata_contig64959:576..2919+ (Himanthalia elongata Himel1 dioecious)
TACGTGGGGTCGCAGTGGCTGGCGATGCCGCCCGTGGCCGCGAGGTGGCT GATGGAGGACAAGAGCCTGGTCCCCAAGTATCGGGAGTACTCGAAGCATA TCGTGGTGGCCGACGAGAACTTTCTGCCCACCATGTTCAAGAATTCCCCT TTCTGCGCCTACCAAGTGTCCTCCAACCTCGTCCACGTGCAGGTAACCAC GTGATGAAATGGGATGGGATGAGATGGGACAAGCTGGTATTTATTATATT TAATATCGTCATTATCTGGATTGGAAGTGGATGATACACGGCGTAGAATG GAGGGAGATCGAGTGGGACGAAGAAAACGAAAGGAAATTCCATGGGGTGG GATATAATGAAATTATATGAGTTGGGACGTCGAGAAATGGGATGCGCACG ATGTGGGTTTCCCTCAGCCGTGAAAGGATTTTTTTATGTTGAAAGGAGGG TGTGTCTGGTTAATGTTTTACGTGGGTTTGTATGCAAAATCGGGTCGATC GGCGGCTCAGCCAGCAGCGCAAGCAGCTGACGGCGTTGAGGGGCTCGGAC AGACGCTCGCGCTTCCCCTCATGTCCTCGCGTTTCCCTTCGCCTTTTTTT AATTATTTATTTTTCTCTTTTTGGGGGGGGGAGCAGCTCTCTCAAAGAAC GAATCTCTCACGTCGTCCCCTCTCTTGTCCCTTCTCTTCAACATTTTATC GTCCGGGTTTGCTCTTGTCCCTTCCCCTCCCCTCCCCTCCCCCGATGCCA ATCGACATCTTGCCTTGGGTGGGCAGTTCGATCGCTACGAGCACACTCTG GATCGGGAGGACCGCCGACTGGATAAGTGCCTCATGCCCAACCCCGACCA CTGCGGGCGATCGCCGGCGACAATGACGCTGGACTATCTCTCCGTGCTGG AGCACAGCCACATGTGACCGTCTGGAAATGTAACATCCATCCATCAATTG TATCTCCTCCCCTTGCTCGCGCACGATTACCGTCACCGCACCGCATCGCG CTTGAATTGCTGCTATCGCCATGATTTATTGTTATATCCCTGCTGCTGCT GCGTGGAAAATTCTAAAGACCGGTCAACCCCCCTCCCCCCCCTAAAACAA CAGGTCGTTGTGCGTATCATACTATCACAGCCGTATATTAAGGCGACGCG CGAGACCCATCTCGAATGAAAGTTCCTGGAAAATTCGGTGGGGAGAGGAT AGAGGGGGGTCGTAAGGAGGATCGTTAGTTCTTCCACAATTTTTTTATAT GTTGCACGATTTCCCCACACCAGCAGCAGTCGGTCCACCGCACGACCCTT TTTTCTTTTAAAATATTGAACGCATTCAAACGCTCCGAACATCCACGCCT ACCTTCTCTTTACAGCACACTCTTATCTCGTCAAGAAGAATATGATGGAT GATGGTAGAACCTTGCTTCCGCTACGGCACAGACAACAACAGCAACAACA AAAAATAACCATATTTTGGGTTGGGGATTCGAACCCACGACTTCCGCACT GATGTCGTACGGTGGCTTGGATTTGCCCTCGGAAGATCCATTTACAATAC AGTACAGTGCAGTGCAGTGCATGTTGATATATATCCCGGTCTTAATATCA TGTATCATGTATCAGGCTCTTCGCGCGCAAGTTCGACCCCAAGGACGAGG AGGTTTTCCAAGTCCTGGATCGTGTCCGCGCCGGGGAGCAGCCGTGGCGG AAGGGTCCCACATTCGACTCTGTCGCGATTCGATCGGTGGCGAGGTGGGG GGGATCCAAGGGGCAAGTGTCGCTGTGCCTGAGTCTTGAAGACTCTCCCC GAAAGGGGTCTTCGCCGTCCTCCGCGTGGCGAAACAGTGCTGGCAGCGGC GGTGGTGGTGGCAAAAGCGAGGCCATGATGGTGAGGTGTTCGGATAAGGA TCCTCATCAGGTGTTCAAGCTCGGTCCCTGCAGTGAGTTTTGATTTGCTC TGAGAAGAGAGCAGGATGGGGGGGGGGCAGTCTTTTTTTTCCGTTTTTTT TTCATTGTTTCGTATCGTATCGTGCTTGGTATTGGAATTTTTTAAGTGTC TTTTATTATGTTTGTGTCTTGTGTATGGGGGTGTGTGTGTGTGTGTGTGT GTTTTTTTTTTTCAATGCTGCATCATGGATGTAGTAATAGCTATCAAGGA AGGAATACCCGTGGCGCCGTCATTGGTCGACCTTTCGCGGTCTCCCCTTC CCCCCCCGTCAACACTGCCTACCGGCACTTTACAAAACAGGCTCGGACGG CCACCTGGAGCTCGGAGAGGGCGGTGAAGGATTTATGCGGGTGAGGGAAC CGAGTCCAACATCAAGGAGACAGGGGAGCAAATTGATGCCGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig64959:576..2919+

>mRNA_H-elongata_contig64959.14082.1 ID=mRNA_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig64959:576..2919+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCCCGTGGCCGCGAGGTGGCTGATGGAGGACAAGAGCCTGGTCCC
CAAGTATCGGGAGTACTCGAAGCATATCGTGGTGGCCGACGAGAACTTTC
TGCCCACCATGTTCAAGAATTCCCCTTTCTGCGCCTACCAAGTGTCCTCC
AACCTCGTCCACGTGCAGATGCCGCCCGTGGCCGCGAGGTGGCTGATGGA
GGACAAGAGCCTGGTCCCCAAGTATCGGGAGTACTCGAAGCATATCGTGG
TGGCCGACGAGAACTTTCTGCCCACCATGTTCAAGAATTCCCCTTTCTGC
GCCTACCAAGTGTCCTCCAACCTCGTCCACGTGCAGTTCGATCGCTACGA
GCACACTCTGGATCGGGAGGACCGCCGACTGGATAAGTGCCTCATGCCCA
ACCCCGACCACTGCGGGCGATCGCCGGCGACAATGACGCTGGACTATCTC
TCCGTGCTGGAGCACAGCCACATTTCGATCGCTACGAGCACACTCTGGAT
CGGGAGGACCGCCGACTGGATAAGTGCCTCATGCCCAACCCCGACCACTG
CGGGCGATCGCCGGCGACAATGACGCTGGACTATCTCTCCGTGCTGGAGC
ACAGCCACATGCTCTTCGCGCGCAAGTTCGACCCCAAGGACGAGGAGGTT
TTCCAAGTCCTGGATCGTGTCCGCGCCGGGGAGCAGCCGTGGCGGAAGGG
TCCCACATTCGACTCTGTCGCGATTCGATCGGTGGCGAGGTGGGGGGGAT
CCAAGGGGCAAGTGTCGCTGTGCCTGAGTCTTGAAGACTCTCCCCGAAAG
GGGTCTTCGCCGTCCTCCGCGCTCTTCGCGCGCAAGTTCGACCCCAAGGA
CGAGGAGGTTTTCCAAGTCCTGGATCGTGTCCGCGCCGGGGAGCAGCCGT
GGCGGAAGGGTCCCACATTCGACTCTGTCGCGATTCGATCGGTGGCGAGG
TGGGGGGGATCCAAGGGGCAAGTGTCGCTGTGCCTGAGTCTTGAAGACTC
TCCCCGAAAGGGGTCTTCGCCGTCCTCCGCCGAGGCCATGATGGTGAGGT
GTTCGGATAAGGATCCTCATCAGGTGTTCAAGCTCGGTCCCTGCACGAGG
CCATGATGGTGAGGTGTTCGGATAAGGATCCTCATCAGGTGTTCAAGCTC
GGTCCCTGCAGCTCGGACGGCCACCTGGAGCTCGGAGAGGGCGGTGAAGG
ATTTATGCGGGTGAGGGAACCGAGTCCAACATCAAGGAGACAGGGGAGCA
AATTGATGCCGTTAGCTCGGACGGCCACCTGGAGCTCGGAGAGGGCGGTG
AAGGATTTATGCGGGTGAGGGAACCGAGTCCAACATCAAGGAGACAGGGG
AGCAAATTGATGCCGTTA
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