mRNA_H-elongata_contig64959.14082.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A6H5K1Q4_9PHAE (Protein xylosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q4_9PHAE) HSP 1 Score: 339 bits (869), Expect = 1.330e-111 Identity = 166/238 (69.75%), Postives = 185/238 (77.73%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGGSKG-QVSLCLSL-EDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSPTSRRQGSKLMPL 708
YVGSQWLAMPP ARWLMED LVPKYREY+KHIVVADENFLPT+ KNSPFC VSSNLVHVQFD+YEHTLDREDRR DKCLMPNPDHCGRSPATMT+DYLSVLEHS MLFARKFDPKD +VF VLD VR G Q WR+GPTFD ++IRS S G LCLS+ P++ SP + EA+MV+CS DP Q+FKLGPCSSDG LELGEGG G+M+ S + R +M L
Sbjct: 177 YVGSQWLAMPPSVARWLMEDTGLVPKYREYAKHIVVADENFLPTVIKNSPFCGNLVSSNLVHVQFDKYEHTLDREDRRADKCLMPNPDHCGRSPATMTVDYLSVLEHSSMLFARKFDPKDSQVFDVLDMVRDGGQAWREGPTFDYISIRSPIIHSSSAGADEHLCLSVGPPPPKQPGSPPNTEAVMVKCSGADPRQIFKLGPCSSDGDLELGEGGNGYMKSARGSMSGRAPSCSIMSL 414
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: D8LMY0_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY0_ECTSI) HSP 1 Score: 308 bits (790), Expect = 1.190e-99 Identity = 149/203 (73.40%), Postives = 164/203 (80.79%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGGSKGQVS-LCLSL-EDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPC 603
YVGSQWLAMPP ARWLMED LVPKYREY+KHIVVADENFLPT+ KNSPFC VSSNLVHVQFD+YEHTLDREDRR DKCLMPNPDHCGRSPATMT+DYLSVLEHS MLFARKF+PKD +VF VLD VR G Q WR+GPTFD ++IRS S G LCLS+ P+K SP + EA+MV+CS DP Q+FKLGPC
Sbjct: 323 YVGSQWLAMPPSVARWLMEDTGLVPKYREYAKHIVVADENFLPTVIKNSPFCGNLVSSNLVHVQFDKYEHTLDREDRRADKCLMPNPDHCGRSPATMTVDYLSVLEHSSMLFARKFNPKDSQVFDVLDMVRDGGQAWREGPTFDYISIRSPIIHSSSGGAAEHLCLSVGPPPPKKPGSPPNTEAVMVKCSGADPRQIFKLGPC 525
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A8J2SSV4_9STRA (Protein xylosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV4_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.570e-36 Identity = 85/234 (36.32%), Postives = 126/234 (53.85%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLM------EDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQP--WRKGPTFDSVAIRSVARWGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSPT 675
Y+GSQW+ + A + + +S +Y Y ++ +VADENF T+ KNSP C + N +HVQFD++E E +KCL P+P HCGRSP T+TLDY+ VLE LFARKFD D ++ +D RA + + + P IR V ++ V LC+S+ + + S E + C +D Q F +GPCS+DGH+EL G + ++ + SP+
Sbjct: 290 YMGSQWMVITRDFAAYATGRESPRQRRSFASQYAPYGRYTMVADENFFTTVLKNSPMCHKHYNQNFLHVQFDQWESDKV-EGPAQNKCLQPDPRHCGRSPTTLTLDYMPVLELGGALFARKFDATYDAKILDAIDANRALQDTAGYSEKPRQYFENIRFVRE---AQNGVELCVSMSNQAER----SIYEVSLKPCDRRDASQRFNIGPCSTDGHIELRSGRQALVKPGDHSPS 515
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S2AW29_9STRA (Protein xylosyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AW29_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.390e-35 Identity = 84/227 (37.00%), Postives = 117/227 (51.54%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQP-----WRKGPT------------FDSVAIRSVARWGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLEL 627
+VGSQWL + A +L+ + KYR Y KH +VADEN+ T+ +NS FC ++N VQFD +EH ++KCL PNPDHCGRSP + L +L VLE S +FARKFDP+ D +D +R+ + W G F+ V I + A G S+C+ L S ++++A + C+ Q F LGPCSSDG L+
Sbjct: 194 HVGSQWLLISSAFANYLVSRGNFADKYRVYGKHTMVADENYFVTVLRNSEFCHTHENTNFAQVQFDEWEHDK-ANGPNVNKCLQPNPDHCGRSPTIIDLAFLPVLELSGAMFARKFDPEIDHRSIDAIDIMRSRDSSSNSGSWSLGXXXXXXDQGLKTRHFEDVVITTTA---GPLTSQSMCVDL-------SQQANSKARVTSCTRGKLSQHFSLGPCSSDGSLDF 409
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S2UAF3_9STRA (Protein xylosyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAF3_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.920e-35 Identity = 93/253 (36.76%), Postives = 127/253 (50.20%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQPWRKGP--------------TFDSVAIRSVARWGGSKGQVSLCLSLEDSPRK------------GSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGEGFMRVREPSP 672
Y SQW + A++L + + V + Y +H+ +ADE F T+ N+PFC + N +H+QFDR+E+ +D E R KCLMP PDHCGRSP TMTLDYLSVLE S +FARKFD D EV +D +RA E+ +G +F + VA+ + +V LCL L D+ + + E V + H +++GPCSSDG LE GE M SP
Sbjct: 392 YTASQWFVLSREFAKYLADPLPGTFVFDFLPYVEHVAIADETFFGTVLMNTPFCHKHHNDNFLHLQFDRWENEVDEEKRDPRKCLMPKPDHCGRSPTTMTLDYLSVLELSEQMFARKFDDDMDPEVKNAVDIIRAREERALRGEKEATEAISRETVNVSFSGHGVLIVAQETVND-EVPLCLGLGDAKNQVRLVPCFFDWVPPTFVPGWETGAVIADETQWHNRWEIGPCSSDGTLERLANGEMNMTPGAYSP 643
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7R9Z3B0_9STRA (Protein xylosyltransferase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3B0_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.710e-33 Identity = 90/241 (37.34%), Postives = 129/241 (53.53%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKF-DPKDEEVFQVLDRVRAGEQPW----------RKGP--TFDSVAIRSVAR------------WGGSKGQVSLCLSLEDSPRKGSSPSSAEAMMVRCSDKDPHQVFKLGPCSSDGHLELGEGGE 642
Y SQW + A ++ K +LV + EY++H VVADE+F T+ ++S +C + N +H+QFDR+E+ L+ R KC+MP+P+HCGRSP TMT+DYL LE S LFARKF D D +V +LD RA E+ + GP +F+ I VA G S+ +V L D + +P+ +V+ + H ++LGPCSSDG+LE E GE
Sbjct: 139 YTSSQWFIISREFAEYIAVAKPGTLVRDFLEYTEHAVVADESFFGTVLRHSSYCTKHHNDNFLHLQFDRWENELETSVRDERKCVMPDPNHCGRSPTTMTMDYLPNLELSDALFARKFIDGVDSKVKDILDMKRAKEEDLLRNSSDMHAVKSGPDTSFEGHGILIVATETINETTPLCLGLGESQNKVRLVPCFHDWVPQTLAPNWETGAVVQ-EETLIHNRWELGPCSSDGNLERMEDGE 378
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S1UEA5_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEA5_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.970e-32 Identity = 64/136 (47.06%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHM--LFARKFDPK-DEEVFQVLDRVRAG 399
Y+GSQW+ + A +++ D L Y +Y+K+IV+ADENF PT+ NSPFC V NL H+QFD +E + + D R KCL P CGRSP TMTLDYL +L+ + FARKF+P D EV + +D +R G
Sbjct: 34 YLGSQWVTLSRDFAYYVVSDTGLAKPYADYAKNIVIADENFFPTVLMNSPFCHTVVRENLHHIQFDEWESSKVQPDTR--KCLQPGNSTCGRSPTTMTLDYLPILDLASKEDFFARKFEPSVDAEVVKYVDDIRFG 167
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A835ZA88_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA88_9STRA) HSP 1 Score: 126 bits (317), Expect = 7.330e-31 Identity = 62/115 (53.91%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 7 GSQWLAMPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFD 351
GSQW P ARWL+ED +LV + Y+ H+ VADE F PT+ SPFC V NL HV+F R D R ++CLMP+P HCGRSP +T DYL VLEHS LFARKFD
Sbjct: 257 GSQWFVGTPAYARWLLEDAALVAPFAAYAAHVAVADEIFFPTLLLASPFCGGVVHDNLHHVEFGRRSDGGDA--RAAERCLMPDPRHCGRSPIAITRDYLPVLEHSGKLFARKFD 369
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: B8LEP4_THAPS (Protein xylosyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEP4_THAPS) HSP 1 Score: 114 bits (286), Expect = 1.850e-28 Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWLMEDK--SLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDRE-DRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPKDEEV 369
Y SQW + A +L S V Y +Y +H+VVADE F T+ +N+ FC+ + N +H+QFDR+E+ + E D+R KCL N DHCGRSP TMTLDYL VLE S LFARKFD EEV
Sbjct: 28 YTSSQWFIISRDFAWYLASPPKDSFVDYYLDYIEHVVVADEAFFGTVIRNTHFCSTLHNDNFLHIQFDRWENEAEGERDQR--KCLFKNRDHCGRSPTTMTLDYLPVLELSGDLFARKFDDVGEEV 151
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Match: A0A7S1UYD6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYD6_9STRA) HSP 1 Score: 117 bits (292), Expect = 9.350e-27 Identity = 83/252 (32.94%), Postives = 123/252 (48.81%), Query Frame = 1
Query: 1 YVGSQWLAMPPVAARWL--MEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSNLVHVQFDRYEHTLDREDRRLDKCLMPNPDHCGRSPATMTLDYLSVLEHSHMLFARKFDPK-DEEVFQVLDRVRAGEQPWRKGPTFDSVAIRSVARWGG--------SKGQVSLCLSLEDSPRKGSS------------PSSAEAMMVRCSDKDP---HQVFKLGPCSSDGHLE-LGEGGEGFMRVREPSPT 675
Y SQW + A +L E S V Y +Y +H+VVADE F T+ +++ FC + + +H++FDR+E L +R KC+M DHCGRSP TMT+DYL V+E + LFARKFD + D +V V+D R ++ G A + G +K LC+ + + KG+ P+ A+ ++ H + LGPCS+DG L+ L E E M + SP+
Sbjct: 37 YTSSQWFIISREFAYYLGKAEPGSFVHNYLDYIQHVVVADETFFGTVLRSTEFCLKHNNWHFLHLEFDRWESDLGESERDERKCMMKRKDHCGRSPTTMTMDYLDVMELTGDLFARKFDERTDSQVKDVIDERRHQQELELTGQIEPEEAFNTDFEGHGVLVLAKETAKTDKPLCMGIGE---KGNQLKLMPCFFDEIVPALADGWETGAVIEEEILLHNKWTLGPCSTDGKLQRLYETAEMAMTPGKYSPS 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64959.14082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64959.14082.1 >prot_H-elongata_contig64959.14082.1 ID=prot_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp MPPVAARWLMEDKSLVPKYREYSKHIVVADENFLPTMFKNSPFCAYQVSSback to top mRNA from alignment at H-elongata_contig64959:576..2919+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64959.14082.1 ID=mRNA_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2344bp|location=Sequence derived from alignment at H-elongata_contig64959:576..2919+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64959:576..2919+ >mRNA_H-elongata_contig64959.14082.1 ID=mRNA_H-elongata_contig64959.14082.1|Name=mRNA_H-elongata_contig64959.14082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig64959:576..2919+ (Himanthalia elongata Himel1 dioecious)back to top |