mRNA_H-elongata_contig6483.14071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6483.14071.1
Unique NamemRNA_H-elongata_contig6483.14071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: D7G3E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E7_ECTSI)

HSP 1 Score: 631 bits (1628), Expect = 8.860e-207
Identity = 429/956 (44.87%), Postives = 507/956 (53.03%), Query Frame = 2
Query:  947 SSGRRLELLLHNVSHKDLALSLRRTLYPAAVVGKG--TGERY--NAIDAPDTALARPKFSRFKASSEIILQKLVEMRKSSGSEPPPAVCAVYRRGEEPEQEREAELALGSAKDTGGVDNDPSNPSAADNRENHNCDDMDGTNAVNGKQREXXXXXXXXXXXRQLSVGFDLDTNPIPVSDLAGYRVRSRDLDRLTSADEKHASNSHIART--RQDSEGGDIAHAWRYP----------------LVARGPGDAMSXXXXXXXXXXXXXGG------------------EGFITGVYFPLLSVLMPRWLKQLAENGN-CNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAP---------------SPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRS-LVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDSRDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTEFACQELFAAEPEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIENVAQV 3643
            S+GRRLE+L+HN+SHKD+ LSLRRT   AA + +   TGE    N IDA DTALARPKFS FK SSE+IL KL E+R + G EPPPAVC VYRRGE        +L  G           PS P                        RE             +SVGFDLD  PIP+ DLAGYRVRS DLDRL  A  + +S++ + +   R+DS                            L  + PG                  G                  E FI+GVYFPLLSVLMP+W++ LA +G+  +++K +LLVSGVG+PR++EHR+EDNSTEVTAVLMEA+LKRH+P VRVVR+HS+TNIFRYDDNIRFVKTELLP L  ERS+ AE+YG  WQDMMH+TMSFADGSPARISSI AALR F+PSFIHIWELKTFWHEK ICEDDVEVHTF++IDM PP+P  EVD  TAL+IAEM RL++D ERVLAAP                    A+ G D  +DLASFWLRKTKKPVLAVLLVQKKG +P+L+RGTNMEVSMPTGSLCAERNVIGSAL+ + SLLRR+IKAVAVLS+  L    +S   TA+AV       P     +  K+  +   I     GGGRS   G      +   S   S   SP  +TP +  SP                  L R  T                    G  A DK+RLEGV QV+                 R+   + +I + P                         KR                                     G   G    +P   S                                R   S++VA VP +T CSNPLKPCGACMEWLKKIAEVNPDFKVITFTDS C GVYIE+VAQ+
Sbjct:  105 SAGRRLEILVHNISHKDMVLSLRRTRKAAAAMPRRPPTGEEAMSNVIDAADTALARPKFSLFKRSSELILHKLQEIRAAGGREPPPAVCPVYRRGE-------PDLRSGP----------PSAP------------------------RE------------SVSVGFDLDDTPIPIFDLAGYRVRSEDLDRLAPAAGRRSSSNLLRKVLNRRDSXXLXXXXXXXXXXXXXXXXXXXXXTGRLLPVQDPGPRQLLLQQQPQLQQLKEDGSXXXXXXXXXXXXXXXXXEAFISGVYFPLLSVLMPKWMELLARSGDDVDSSKTVLLVSGVGQPRNEEHRLEDNSTEVTAVLMEAFLKRHFPTVRVVRVHSDTNIFRYDDNIRFVKTELLPLLNAERSQMAEKYGEDWQDMMHITMSFADGSPARISSINAALRHFKPSFIHIWELKTFWHEKAICEDDVEVHTFEDIDMQPPMPVSEVDAPTALIIAEMQRLRDDLERVLAAPPRGAYTRQAFDAPAGDANGEAVVGGDTRDDLASFWLRKTKKPVLAVLLVQKKGGRPQLFRGTNMEVSMPTGSLCAERNVIGSALTSDLSLLRRDIKAVAVLSVAHLGGPPASTATTAAAV-------PI----DERKEGASLTGITAVDSGGGRSGWPGAAGMGSAVGSSLTTSCAPSPLSLTPAMKVSP---------------KSALLRTET--------------------GAGAEDKERLEGVRQVR-----------------RKTKVVRSIASTP-------------------------KRGVGSG--------------------------------GIAAGGWEKSPLTDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQI 887          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A6H5K1D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D9_9PHAE)

HSP 1 Score: 521 bits (1342), Expect = 3.920e-168
Identity = 322/570 (56.49%), Postives = 380/570 (66.67%), Query Frame = 2
Query:  947 SSGRRLELLLHNVSHKDLALSLRRTLYPAAVVGKG--TGERY--NAIDAPDTALARPKFSRFKASSEIILQKLVEMRKSSGSEPPPAVCAVYRRGEEPEQEREAELALGSAKDTGGVDNDPSNPSAADNRENHNCDDMDGTNAVNGKQREXXXXXXXXXXXRQLSVGFDLDTNPIPVSDLAGYRVRSRDLDRLTSADEKHASNSHIART--RQDSEG----GD---------------------IAHAWRYPLVAR-----------GPGDAMSXXXXXXXXXXXXXG----GEGFITGVYFPLLSVLMPRWLKQLAENGN-CNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAER 2515
            S+GRRLE+L+HN+SHKD+ LSLRRT   AA + +   TGE    N IDA DTALARPKFS FK SSE+IL KL +MR + GSEPPPAVC VYRRGE         L  G              PS+A                     RE             +SVGFDLD  PIP+ DLAGYRVRS DLDRL  A  + +S++ + +   R+DS G    G                      +    R  L+ +           G GD   XXXXXXXXXXXXX     GE FI+GVYFPLLSVLMP+W++ LA +G+  +++K +LLVSGVG+PR++EHR+EDNSTEVTAVLMEA+LKRH+P VRVVR+HS+TNIFRYDDNIRFVKTELLP L  ERS+ AE+YG  WQDMMH+TMSFADGSPARISSI AALR F+PSFIHIWELKTFWHEK ICEDDV  HTF++IDM PP+P  EVD  TAL+IAEM RL++D ERVLAAP  P+ A+ G DA +DLA+FWLRKTKKPVLAVLLVQKKG QP+L+RGTNME S     +   R
Sbjct:  103 SAGRRLEILVHNISHKDMVLSLRRTREAAAAMPRRPPTGEEAMSNVIDAADTALARPKFSLFKRSSELILHKLQDMRAAGGSEPPPAVCPVYRRGE-------PSLRSG--------------PSSA--------------------PRE------------SVSVGFDLDDTPIPIFDLAGYRVRSEDLDRLAPAAGRRSSSNLLRKVLNRRDSSGLFLVGSGXXXXXXXXXXXXXXTGRLLPVQDPGRRQLLRQQQPQLQQLKEDGSGDGXXXXXXXXXXXXXXXXXXXEGEAFISGVYFPLLSVLMPKWMELLAGSGDDVDSSKTVLLVSGVGQPRNEEHRLEDNSTEVTAVLMEAFLKRHFPSVRVVRVHSDTNIFRYDDNIRFVKTELLPLLNAERSQMAEKYGEDWQDMMHITMSFADGSPARISSINAALRHFKPSFIHIWELKTFWHEKAICEDDV--HTFEDIDMQPPMPVSEVDAPTALIIAEMQRLRDDLERVLAAP--PRGAVVGGDARDDLATFWLRKTKKPVLAVLLVQKKGGQPQLFRGTNMEASFNAHGIAVRR 615          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: W7U454_9STRA (Cytidine deaminase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U454_9STRA)

HSP 1 Score: 368 bits (945), Expect = 7.180e-107
Identity = 322/943 (34.15%), Postives = 429/943 (45.49%), Query Frame = 2
Query:  956 RRLELLLHNVSHKDLALSL------------------RRTLYPAAVVGKG-------TGERY---NAIDAPDTALARPKFSRFKASSEIILQKLVEMRKSSGSEPPPAVCAVYRRGEEPEQEREAELALGSAKDTGGVDNDPSNPSAADNRENHNCDDMDGTNAVNGK---QREXXXXXXXXXXXRQLSVGFDLDTNPIPVSDLAGYRVRSRDLDRL------TSADEKHASNSHIARTRQDSEGGDIA----HAWRYPLVARGPGDAMSXXXXXXXXXXXXXGGEGFITGVYFPLLSVLMPRWLKQLAEN----GNCNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKED----WERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDSRDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTEFACQELFAAEPEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIENVA 3637
            RR+ELL+HNVSHKD+ LSL                  R +   + V+  G       T  R    +A+   D  L RPKFS F+  S+ ILQ +      S   P      VY R                       +++PS P+A     + +    D  +   G    +R             +L VGFDL   P+PV DL  +R+R  DL +L            H S         ++ GG  A       R PL  R    + +                  I GVYFPLL+ ++P W K +A      G     K+I LVSGVG PR      E NST+ TA L+E +++R+YPDVRVVR+HS TNIFRYD+NI FVK ELLP +E  R   AER+G++W+    +T+SFADGSPARIS+I AALRP+RPSF+H WELKTFWH   +C +DVEV  F++ID  PP+P    D    LV  EMLR KE+    + + L A               DL++FWLRKT+KPVLAVLLVQK   +P LYRG NMEVSMPTGSLCAERN IGSAL+ + +L RR++K VAVLS+    K  ++                    G   +    A   +          +   P   S++      RN S  +     +     PR L G R  +G AG   R G                 GD +G      +R     +V   L    +  R  I+ S                      ++ ++L     +    K       P PAE              RGR        H + +   S +P+  SKS  P++    S   ++GGG  + G   G    ++ ++ +          NPLKPCGACMEWLKKIAE NP+F+V TFTD  C G+Y E V+
Sbjct:  139 RRIELLVHNVSHKDMVLSLATLPGLGPSRTPSEELLSRTSSTSSTVLRVGPLAPFTATHRRRTSSSAVMQEDLVLCRPKFSLFQPVSDAILQVVHHHICPSVKVP------VYVR-----------------------EHNPSAPAALPGPHSSSASSSDAPSLRRGDMRHERSYTLRRQSLTTQPELPVGFDLSECPLPVQDLTDFRLRRDDLGKLYPPLPSPRLQPPHPSPGGHDPAVTENAGGMAAAKNDSVDRDPLAGRSSPRSPAPLQDAVG-----------IDGVYFPLLANVLPTWRKTVAAGVGPGGEEEVFKIIFLVSGVGMPRDPTSSREGNSTQGTAALLEEWMQRNYPDVRVVRVHSTTNIFRYDENIAFVKNELLPLIEHYRDGAAERWGTSWRHKYRLTISFADGSPARISAINAALRPYRPSFMHTWELKTFWHHAKMCLEDVEVLAFEDIDTAPPVPLSHADARARLVAQEMLRYKEEVLLHYRQGLCA---------------DLSTFWLRKTEKPVLAVLLVQKDRARPLLYRGCNMEVSMPTGSLCAERNAIGSALAADLTLKRRDLKVVAVLSVS-FGKNGNTGXXX-----------XXXXXGRKPEGTAKALDAVFAS-------IDTAPRVASQTTD----RNHSYSDSCTGHSIGNAQPRGLLGPR--KGDAGASERTGGSMMASV----------GDQEGPWTPSSRRTGAQEEVFDGL----SPPRTTIIRS----------------------YSVKDLNGCGQDGAFGK-------PSPAEC-------------RGRP-------HASSMD--SLDPKS-SKSTSPII--PLSNLRVDGGGRDQQG--PGAMTIRVEADDL----------NPLKPCGACMEWLKKIAEKNPEFRVATFTDEACRGIYTEFVS 921          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A7R9UFD1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD1_9STRA)

HSP 1 Score: 335 bits (860), Expect = 2.680e-95
Identity = 303/927 (32.69%), Postives = 436/927 (47.03%), Query Frame = 2
Query:  953 GRRLELLLHNVSHKDLALSLRRTLYPAAVVGKGTGERYNAIDAPDTALARPKFSRFKASS----EIILQKLVEMRK-------SSGSEPPPAV--CAVYRRGEE---------PEQEREAELALGSAKDTGGVDNDPSNPSA-ADNRENHNCDDMDGTNAVNGKQREXXXXXXXXXXXRQLSVGFDLDTNPIPVSDLAGYRVRSRDLDRLTSADEKHASNSHIARTRQDSEGGDIAHAWRYPLVARGPGDAMSXXXXXXXXXXXXXGGEGFITGVYFPLLSVLMPRWLKQLAENG--------NCNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTAL-VIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGC-QPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDSRDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTEFACQELFAAEPEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIENV 3634
            GR LE+L+HNVSHKD+ + +   L       K  G     +D P  ALARPKFS + A S    E I  +L+  +K       S GS+ P      A+  RG++         PE  R                 DPS PS  +DN  N +                           R++  G DL  +  P    + +    +D   ++  D       + A TR    GGD+       ++ R P ++ S              G   I GV+FPLL+VL+P+W   + + G        +    K+I+LVSGVG+PR+ E R EDNSTEV A+L   +++R  PDV+++RLHS TNI+RY +NI FVK ELLP L   R   A R+GS+W++ M VT+SFADGSPAR+++I AALRP++PSF+HIW+L+TFWH + IC DDVEV +F E+D  P +P  EVD      V  EM++ +ED+++ ++      +      + +DL +FW+RK+ K VL+VLL +K G  +P L+RGTNMEVSMPTGSLCAERNVIG+AL+ + +L R +++ +AVLS+       SS K  A  V    +  P   +     + L  AA   + G          PA   ++               P LT+S + P   G  ++    +    +HG+                   +  +   + +L  V     A+ +V    R + LP      L   D+      R++ +    E   +E    ASKR+ +E+     +   +P    QR+ T     R  +  + A   P +   +                        G + R E V                    NPLKPCGACMEWL+KIAEVNP F V+TFTD  C GVY E+V
Sbjct:  144 GRGLEVLVHNVSHKDMVVGICNYLRCRTTSSKPDG---GPVD-PTIALARPKFSLYYAVSKQIYEFIEDRLLRSQKRASHVGSSVGSDTPVTTKRSALDLRGKQLRPLKVLWFPESRR-----------------DPSLPSTFSDNASNES---------------------------RRIPGGLDLAASGDPKQAYSEHPRNGQDF--ISVPDPSGFKFRNDASTRAVL-GGDL------DILGRPPTESPS--------------GIFGIAGVFFPLLAVLLPKWRAFIRDRGAVQDLITGSAQTRKVIVLVSGVGEPRNPEDRKEDNSTEVAAMLASLFIQRLCPDVKIIRLHSKTNIYRYTENIGFVKFELLPLLAEFRDAQAARWGSSWREKMRVTVSFADGSPARVAAINAALRPYKPSFMHIWQLQTFWHARRICLDDVEVLSFAEVDTYPAVPTNEVDDDEMKWVCEEMVKFREDFDKAVSGDDNDSQG----QSKHDLGTFWMRKSGKVVLSVLLTRKGGGGKPLLHRGTNMEVSMPTGSLCAERNVIGTALAHDLTLKRNDLRIIAVLSVSL-----SSTKSPAQGV----SATPRDPNPPYLPNALAYAAPGFSLG---------APALDEDA---------------PVLTSSMSMPDLQGMVQLGEPTS-PPSKHGSAP----------------KEQPSPPTRSKLSLVNDSASAMENV----RSMKLPR-----LQREDS-----GRSARDDDVAENAGSECGSTASKRSRSES----VDLKRTP----QRRTTLRSLKRARDYQNLAASSPFALFTKM-----------------------GSAPRGESVVLTDASD------------LNPLKPCGACMEWLRKIAEVNPQFAVLTFTDRDCKGVYREHV 888          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A7S2WW95_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW95_9STRA)

HSP 1 Score: 314 bits (804), Expect = 3.500e-90
Identity = 228/667 (34.18%), Postives = 314/667 (47.08%), Query Frame = 2
Query: 1697 ITGVYFPLLSVLMPRWLKQLAENGNCNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLA------APSPPQRAIAGRDATN----------DLASFWLRKTKKPVLAVLLVQKKG-CQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSL--PRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDSRDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTEFACQELFAAEPEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIENVAQ 3640
            I+GVYFPLL+ ++PRWL+ L E+   +A K++ LVSGVG PR +      NSTE  + L+E +L  HYP + V R+HS+TN+FRYD+NI FVK ELLP +E  R   A + GSAW+D   +T+SFA GSPARI++I++ALRP+RP F+H+W+LKTFWHE  IC DD+E  + ++++ LP +P  + DP   LV   +  LK+ ++ V+       A SP ++      +++          D+A FW RK++K VL+VLLV K+G  QP+LY GTNMEVSMPTGSLCAERN IGSAL+ + SL R E+K + VL L  P+  K  +      S   S  A+ P   D     D   A+A L++   G                          F                                 ++   D   E+ +     D+    + D+  L   P+ K              LPS   L        P    RNST        A                                                     RST    R+ S +PL                  G   G PA      +  ++  +    NPLKPCGAC EWLKKIAEVNP F+++TFTD+ C+G YIE+V +
Sbjct:  102 ISGVYFPLLATIIPRWLQALRESRAQDAWKIVYLVSGVGVPRDESADPGQNSTEGVSELLEMWLLTHYPGITVRRVHSDTNLFRYDENIAFVKRELLPEIEPIRDALACKLGSAWRDNFKLTVSFASGSPARITAIQSALRPYRPMFMHMWQLKTFWHESTICLDDIEFMSSEDVETLPAVPTEQTDPHVQLVAQRIKELKQQFDAVVTGSGGAQASSPLRQFFPDTSSSDGPVLCSPVGHDMAKFWHRKSRKVVLSVLLVLKEGETQPRLYAGTNMEVSMPTGSLCAERNAIGSALAADLSLKRSELKLIGVLGLVLPKERKAEAVRPTKKSTRDSDTALLPIPLD-----DRAPASAPLVSSSSG--------------------------F---------------------------------SLYLADGEREEKKNALQVDIPDAKSGDQSTLSP-PRFKTLRSFERGDSANSGLPSELALPPTKASAFPYGNLRNSTSTGTLSQAA-----------------------------------------------------RSTE---RAGSSDPL------------------GSHPGTPAM-----LSRKLQVEMEDMNPLKPCGACSEWLKKIAEVNPAFRILTFTDANCTGTYIESVME 624          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A7S2ES86_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES86_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.730e-85
Identity = 238/730 (32.60%), Postives = 354/730 (48.49%), Query Frame = 2
Query: 1694 FITGVYFPLLSVLMPRWLKQLAENGNC------NAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAER--------------------------------YGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAPSPPQRAIAGRDAT-NDLASFWLRKTKKPVLAVLLVQKK-----GC-QPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDS-----------RDEDCREGG--------GGDVQGVAA------ADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTEFACQELFAAE-------PEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRT----EEEDHGAIVGPRS---TNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIEN 3631
            ++  ++FPLL+ L+PRW  Q+ E  N          K+++L SGVG PR+  H +  NST+  A LME ++   YPDV VVR+HS+TNIFRYD+NI FVK EL+P ++  R   A                                  +   W+    VT+SFADGSPAR  +I+A+LRP++P++ H W+LKTFWHE  IC+DD+EVH+F++++ +P +   + +    LV+ EM      +   L        +I G   + ND+  FWLRKTKKPVLAVLLV+K+     G  +P LYRGTNMEVSMPTGSLCAERNVIG+AL+ + SL R ++K VAVL++P    +S            +  +    G  +       A+ + +  GGG  ++    P + +E  + +        EV   L            E+  +  +G + R  +++ + S           R+E+ R+G          GDV   ++       D   +    Q++C            +  S       NI T+P      S +F+    + A+       P D +   ++  A+   A A  S +  +Q     G   RT     ++D G++V          + RSK    + S        + G  G  G+      R+     V  V + T   NPL+PCGAC EWLKKIAEV+ DFKV+TFTD+ C+GVY+ +
Sbjct:   51 YLNAIFFPLLATLLPRWTNQIEEKYNSLSISSHQIKKIVILCSGVGTPRNWTHSITGNSTQALAELMEMFITALYPDVTVVRVHSDTNIFRYDENISFVKRELMPVIDAYRDAHARNEAYPDEKEEIQLLEDKEMVVXXXXXXXXXXNPFDPDWKKSFAVTLSFADGSPARTHAIQASLRPYKPTYFHFWQLKTFWHESKICDDDIEVHSFEDMETVPAMEVNQTNEKVQLVVEEMKNFHAHFLEALKEDEEEGLSIDGGGVSKNDIRQFWLRKTKKPVLAVLLVEKQYDVNGGVGKPILYRGTNMEVSMPTGSLCAERNVIGTALASDPSLKREDLKMVAVLAVP----LSPXXXXXXXXXXXNVPLCQPCGSSD-------ASTVEIRHGGGELAIPVAAPTSATEGHAFLT-------EVEQKL------------EQSRQQQSGNMRRSLSVTSFASIVECVNEDQEEREEEGRQGAVIIAEGSNTGDVDLSSSWVVNDGIDADPISDQQQIQCTQEEKEEGGESSLFSSLSS----NIITVP-----KSPKFSPLLTYGADYPSSVVPPLDLSQVPSSHVAAATAAAASISNASPKQP----GTPMRTIKLYTDDDAGSVVAEDDFLKMGKQVRSK----ITSDVYGISGTDAGKSGLIGKPPIGQGRRKQKRTVV-VHSSTEDLNPLRPCGACNEWLKKIAEVSIDFKVLTFTDADCNGVYVSS 732          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A3M6VVK1_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVK1_9STRA)

HSP 1 Score: 280 bits (716), Expect = 8.130e-78
Identity = 136/305 (44.59%), Postives = 207/305 (67.87%), Query Frame = 2
Query: 1697 ITGVYFPLLSVLMPRWLKQLAENGNCNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKK----GCQPKLY--RGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSL 2593
            IT VYFPL+++L+P+W++ L E  + N+ +++ L+SG G PR+ EH   DNSTE+TA L+  ++ ++YP +  +++HS +NIFR+DDN++F+  EL P LE +R    +R G AW+   HVT+++ADG PAR+S++ A+LR +RPS++HIW+LKTFWHE+ +   DV+ H+F++I+  P +   + D  T +V+ EM   ++ +                 +   ++ASFWLRK++KPVLAVLL++K     G +P +   RG N EVSMPTGSLCAERN IGSAL+ + +L RR +K +AVL L
Sbjct:  165 ITAVYFPLVALLLPKWMQVLKEFQSENSRQLVYLISGAGIPRNVEHSRNDNSTEITAQLIALFVHQYYPHMTAIQVHSGSNIFRFDDNVQFMTRELRPLLEAQRETLVDRCGEAWKSHFHVTIAYADGPPARLSALNASLRIYRPSYLHIWQLKTFWHERKLSMVDVDFHSFEKIEASPLVAPSKADAMTQMVVREMRMFRDQF--------------LSAEGEGEVASFWLRKSRKPVLAVLLIEKPATVAGERPTIVVQRGMNCEVSMPTGSLCAERNAIGSALASDPTLTRRALKMIAVLGL 455          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A835Z834_9STRA (A distinct subfamily of CDD/CDA-like deaminases-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z834_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.020e-77
Identity = 206/542 (38.01%), Postives = 255/542 (47.05%), Query Frame = 2
Query: 2027 YGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPS--FIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASAVLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESESSMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDSRDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRRPLCLMNIDTIPLVIPRNSTE--FACQELFAAEPEDRASKRATTEASPHPAEALESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRAKSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSFCSGVYIENVAQ 3640
            YGS W+DMMH+T+SFADGSPARISSI A+LR +RP   ++HIWELKTFWHE  ICEDDVE HTF++I+  P  P  E  P  A V+AEMLRL++ +            ++  RDA NDLA FWLRKTKKPVLAVLLVQK G +PK+YRGTNMEVSMPTGSLCAERNVIG+AL+D+ SL RR+++ VAVL+            +T +A L  A         +   DC       LT+ G   S+   TP A                        SP  P           AAG    + + S     +         D  G     ++R E  P+                                    R  T     CQE       +R S  A                                   H  +  P    P  R  SC+ ++ R     A          RS+ V  R +H   V +V A+    NPLKPCGAC EWL+KIAEVNPDFKV+TFTD+ C GVYIE+V  
Sbjct:    2 YGSDWRDMMHLTISFADGSPARISSINASLRHYRPRQVYMHIWELKTFWHEGRICEDDVEAHTFEDIETAPATPPAEAGPLVAQVVAEMLRLRDAF------------SVRLRDAFNDLAQFWLRKTKKPVLAVLLVQKPGQEPKVYRGTNMEVSMPTGSLCAERNVIGTALADDLSLCRRDLRMVAVLA------------VTLAAPLPPATPQAQTPALQMPPDCFGR----LTKAGS--SVFNDTPCA------------------------SPLLP-----------AAGAFSSYRSESAGSQAEAQAFSSA--DATGFYMRARRRSESWPE------------------------------------RGETNGVLVCQE-------ERLSAAA-----------------------------------HQHVHAP----PLTRIGSCDSII-RTTDASAPNTPTHKPGHRSQLV--RSLHKGSVQKVQAQHAAVNPLKPCGACTEWLRKIAEVNPDFKVLTFTDTTCEGVYIESVTS 391          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A448YX44_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YX44_9STRA)

HSP 1 Score: 284 bits (727), Expect = 2.160e-77
Identity = 205/604 (33.94%), Postives = 303/604 (50.17%), Query Frame = 2
Query:  956 RRLELLLHNVSHKDLALSLRRTLYPAAVVGKGTGERYNAIDAPDT-ALARPKFSRFKASSEIILQKLVEMRKSSGSEPPPAVCAV--YRRGEEPEQEREAELALGSAKDTGGVDNDPSNPSAADNRENHNCDDMDGTNAVNGKQREXXXXXXXXXXXRQLSVGFDLDTN-------PIPVS--DLAGYRVRSRDLDRLTSADEKHASNSHIARTRQDSEGGDIAHAWRYPLVARGPGDAMSXXXXXXXXXXXXXGGEGFITGVYFPLLSVLMPRWLKQLAENGNCNAA---------KMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETER----------------SRTAER-------YGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTAL--VIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKI 2629
            R  ELL+HNVSH DL LSL     P++  G        A+D  D   L RP+FS F A S+ ++  L   R+    E   AV  +  Y R ++ +Q +                     PS+ + R++                               + +GF L+ +       P+ VS  +L   RVR RD  R+ +     + NS +                                                I  V+FPLL+ LMP W  ++ +  N  +A         ++++LVSGVG+PR+  H  + NSTE  A LM+ +LK  +P++ V+ +HS+TNIFRYD+NI FV  ELLP ++  R                S TA+        + + W+    +T+S+ADGSPAR S+I+AALR F+P++ H W+LKTFWHE  I   DVEVH+F+EI+ LPP+ + ++   + +  V+ EM   ++D+ ++L+  S         D +ND+ +FWLRKT KPV+A+L VQ    + KLYRGTNMEVSMPTGSLCAERNVIG+AL+D  SL R+++K VAVL++P   ++ +S  +
Sbjct:  218 RYAELLVHNVSHTDLVLSLDAPRLPSSTTGF-------AMDGNDPYCLCRPRFSAFDAYSQRLVDFLQGCRQRELEE---AVIHLPRYERNDKTQQPQ---------------------PSSENFRDD-------------------------------IPIGFRLNDDRNDKSHRPLRVSPSELHNLRVRGRDASRVDACSSPMSPNSTLN-----------------------------------------------INAVFFPLLATLMPLWEDRIHQKYNFPSATTQSALKPKQVLILVSGVGQPRNWTHSAKGNSTEQCAELMKMFLKVIFPELVVLHIHSDTNIFRYDENIAFVNQELLPRVQEYRDAHAKGLPYPDEIINLSSTAKDSIDQDRPFSTEWRKSFSITISYADGSPARNSAIQAALRTFKPTYYHFWQLKTFWHESKIVNSDVEVHSFEEIETLPPVESNQLQDGSLVKRVVEEMKNFRDDFLKILSNSS---------DDSNDIRAFWLRKTHKPVIAILAVQPPNGELKLYRGTNMEVSMPTGSLCAERNVIGTALADNPSLRRQDLKMVAVLAVPNPKQLQASTSV 703          
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Match: A0A7S4EMT4_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT4_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.920e-76
Identity = 195/582 (33.51%), Postives = 294/582 (50.52%), Query Frame = 2
Query:  956 RRLELLLHNVSHKDLALSLRRTLYPAAVVGKGTGERYNAIDAPDT-ALARPKFSRFKASSEIILQKLVEMRKSSGSEPPPAVCAVYRRGEEPEQEREAELALGSAKDTGGVDNDPSNPSAADNRENHNCDDMDGTNAVNGKQREXXXXXXXXXXXRQLSVGFDLDTNPIPVSDLAGYRVRSRDLDRLTSADEKHASNSHIARTRQDSEGGDIAHAWRYPLVARGPGDAMSXXXXXXXXXXXXXGGEGFITGVYFPLLSVLMPRWLKQLAENGNCNAA--------KMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLKRHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAER------------------------YGSAWQDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEVHTFDEIDMLPPIPAPEVDPSTAL--VIAEMLRLKEDWERVLAAPSPPQRAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMPTGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLP 2596
            R +ELL+HNVSH DL LSL     P++     T       +  D   L RP+FS F A S+ ++  L E ++    E        Y R +E +Q + +     S K  G +             +  N    D ++  + + R                    L  +P  + DL   R+R RD+ R+    E H+S S  + +  +                                          I  V+FPLL+ LMP W  ++ E    ++         ++++LVSGVG+PR+  H V+ NST+  A LM+ +LK  +P++ V+ +HS+TNIFRYD+NI FVK ELLP ++  R   A+                         +   W+    +T+S+ADGSPAR S+I+AALR F+P++ H W+LKTFWHE  I   D+EVH+F+E++ LPP+ +  +   + +  V+ EM   ++ + ++L+  S         + +ND+ +FWLRKT KPV+A+L VQ    + KLYRGTNMEVSMPTGSLCAERNVIG+AL+D  SL R+++K +AVL++P
Sbjct:  262 RYVELLVHNVSHTDLVLSLDAPRLPSSSDTNSTSPASTDGNGNDPYCLCRPRFSAFDAYSQRLVDFLKEQQQKKLREEAVINLPRYERNDETQQPQPS-----SEKIRGDIP-------VGFRLQEENGKHSDRSDKSSSRHR--------------------LGVSPSELHDL---RIRGRDVSRV----EAHSSTSLSSNSLMN------------------------------------------INAVFFPLLATLMPLWEDRIIEKYGSSSTTISSPIPKQVLILVSGVGQPRNWTHSVKGNSTQQCAELMKIFLKTIFPNLVVLHIHSDTNIFRYDENIAFVKQELLPRVQEYRDAHAKALPYPDEIANLPSGIINNTIDNDRPFSPEWRKSFSITISYADGSPARNSAIQAALRTFKPTYYHFWQLKTFWHESKIVNSDIEVHSFEEMETLPPVESNRLQDRSLVKQVVEEMKTFRDKFTQILSNTS---------EDSNDIRAFWLRKTHKPVIAILAVQPPNGKVKLYRGTNMEVSMPTGSLCAERNVIGTALADNPSLRRQDLKMIAVLAVP 753          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6483.14071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E7_ECTSI8.860e-20744.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1D9_9PHAE3.920e-16856.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U454_9STRA7.180e-10734.15Cytidine deaminase-like protein n=2 Tax=Monodopsid... [more]
A0A7R9UFD1_9STRA2.680e-9532.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WW95_9STRA3.500e-9034.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2ES86_9STRA2.730e-8532.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A3M6VVK1_9STRA8.130e-7844.59Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A835Z834_9STRA1.020e-7738.01A distinct subfamily of CDD/CDA-like deaminases-do... [more]
A0A448YX44_9STRA2.160e-7733.94Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EMT4_9STRA3.920e-7633.51Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6483contigH-elongata_contig6483:1087..9520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score646.0
Seed ortholog evalue3.4e-182
Seed eggNOG ortholog2880.D7G3E7
EggNOG free text desc.A distinct subfamily of CDD/CDA-like deaminases
EggNOG OGs293GQ@1,2RADN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006560.1
Exons11
Model size3649
Cds size3408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6483.14071.1prot_H-elongata_contig6483.14071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6483 1328..9520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.889809-UTR-H-elongata_contig6483:1086..13271622931033.889809-UTR-H-elongata_contig6483:1086..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6483 1087..1327 +
1691679670.3928711-UTR-H-elongata_contig6483:1086..13271691679670.3928711-UTR-H-elongata_contig6483:1086..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6483 1087..1327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.91348-CDS-H-elongata_contig6483:1327..21671622931033.91348-CDS-H-elongata_contig6483:1327..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 1328..2167 +
1691679670.4106975-CDS-H-elongata_contig6483:1327..21671691679670.4106975-CDS-H-elongata_contig6483:1327..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 1328..2167 +
1622931033.9320447-CDS-H-elongata_contig6483:3465..36471622931033.9320447-CDS-H-elongata_contig6483:3465..3647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 3466..3647 +
1691679670.4234054-CDS-H-elongata_contig6483:3465..36471691679670.4234054-CDS-H-elongata_contig6483:3465..3647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 3466..3647 +
1622931033.9520848-CDS-H-elongata_contig6483:4394..48841622931033.9520848-CDS-H-elongata_contig6483:4394..4884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 4395..4884 +
1691679670.4325087-CDS-H-elongata_contig6483:4394..48841691679670.4325087-CDS-H-elongata_contig6483:4394..4884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 4395..4884 +
1622931033.9666991-CDS-H-elongata_contig6483:5246..53511622931033.9666991-CDS-H-elongata_contig6483:5246..5351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 5247..5351 +
1691679670.4421115-CDS-H-elongata_contig6483:5246..53511691679670.4421115-CDS-H-elongata_contig6483:5246..5351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 5247..5351 +
1622931033.9786494-CDS-H-elongata_contig6483:5509..55981622931033.9786494-CDS-H-elongata_contig6483:5509..5598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 5510..5598 +
1691679670.451277-CDS-H-elongata_contig6483:5509..55981691679670.451277-CDS-H-elongata_contig6483:5509..5598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 5510..5598 +
1622931033.9918382-CDS-H-elongata_contig6483:6096..61931622931033.9918382-CDS-H-elongata_contig6483:6096..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 6097..6193 +
1691679670.4611382-CDS-H-elongata_contig6483:6096..61931691679670.4611382-CDS-H-elongata_contig6483:6096..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 6097..6193 +
1622931034.0115056-CDS-H-elongata_contig6483:6606..67621622931034.0115056-CDS-H-elongata_contig6483:6606..6762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 6607..6762 +
1691679670.4710789-CDS-H-elongata_contig6483:6606..67621691679670.4710789-CDS-H-elongata_contig6483:6606..6762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 6607..6762 +
1622931034.0465512-CDS-H-elongata_contig6483:7376..75211622931034.0465512-CDS-H-elongata_contig6483:7376..7521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 7377..7521 +
1691679670.481461-CDS-H-elongata_contig6483:7376..75211691679670.481461-CDS-H-elongata_contig6483:7376..7521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 7377..7521 +
1622931034.0589302-CDS-H-elongata_contig6483:7760..78941622931034.0589302-CDS-H-elongata_contig6483:7760..7894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 7761..7894 +
1691679670.4947288-CDS-H-elongata_contig6483:7760..78941691679670.4947288-CDS-H-elongata_contig6483:7760..7894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 7761..7894 +
1622931034.0722215-CDS-H-elongata_contig6483:8312..89631622931034.0722215-CDS-H-elongata_contig6483:8312..8963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 8313..8963 +
1691679670.506554-CDS-H-elongata_contig6483:8312..89631691679670.506554-CDS-H-elongata_contig6483:8312..8963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 8313..8963 +
1622931034.0900457-CDS-H-elongata_contig6483:9001..95201622931034.0900457-CDS-H-elongata_contig6483:9001..9520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 9002..9520 +
1691679670.5157218-CDS-H-elongata_contig6483:9001..95201691679670.5157218-CDS-H-elongata_contig6483:9001..9520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6483 9002..9520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6483.14071.1

>prot_H-elongata_contig6483.14071.1 ID=prot_H-elongata_contig6483.14071.1|Name=mRNA_H-elongata_contig6483.14071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1136bp
MSLHLPESVALLALSITTLAVVLVGIERSRARRPGDSRSGLSNDTFASAI
ATPGSMAPDDGCDDVLVHCSTPHPLERTRPLTQSAKTGARGNDVSPRRWR
RQCRCISQGGPFQAIPIVPSEDEKAMVPVRTMNNKSCCCHCCCCRDLEQA
RYGHRRGNDGVENVSGDSENRLVPHGDDDDGYGRGMAGSAIRSPPLGATT
PFSGGGVEARRSGAAPTLTPTYPAPNSSKEATSSASSGRRLELLLHNVSH
KDLALSLRRTLYPAAVVGKGTGERYNAIDAPDTALARPKFSRFKASSEII
LQKLVEMRKSSGSEPPPAVCAVYRRGEEPEQEREAELALGSAKDTGGVDN
DPSNPSAADNRENHNCDDMDGTNAVNGKQREQQQQQQQRHRRRQLSVGFD
LDTNPIPVSDLAGYRVRSRDLDRLTSADEKHASNSHIARTRQDSEGGDIA
HAWRYPLVARGPGDAMSPGPRLGEGWRDGEGGEGFITGVYFPLLSVLMPR
WLKQLAENGNCNAAKMILLVSGVGKPRSQEHRVEDNSTEVTAVLMEAYLK
RHYPDVRVVRLHSNTNIFRYDDNIRFVKTELLPFLETERSRTAERYGSAW
QDMMHVTMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICED
DVEVHTFDEIDMLPPIPAPEVDPSTALVIAEMLRLKEDWERVLAAPSPPQ
RAIAGRDATNDLASFWLRKTKKPVLAVLLVQKKGCQPKLYRGTNMEVSMP
TGSLCAERNVIGSALSDEFSLLRREIKAVAVLSLPRLDKISSSNKITASA
VLSSAAVAPTAGDGENYKDCLNAAAILLTRGGGGRSLVGLTPAAISESES
SMQSRNVSPFEVTPTLTTSPTWPRRLGGERVSRGAAGTLGRHGTISFWDS
RDEDCREGGGGDVQGVAAADKKRLEGVPQVKCALHHVTTHDRFVILPSRR
PLCLMNIDTIPLVIPRNSTEFACQELFAAEPEDRASKRATTEASPHPAEA
LESPSDGQQRQKTRGRETRTEEEDHGAIVGPRSTNPRFRSKSCEPLVSRA
KSKQALEGGGDGESGRSEGVPARQIHSNVVARVPAKTPCSNPLKPCGACM
EWLKKIAEVNPDFKVITFTDSFCSGVYIENVAQVL*
back to top

mRNA from alignment at H-elongata_contig6483:1087..9520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6483.14071.1 ID=mRNA_H-elongata_contig6483.14071.1|Name=mRNA_H-elongata_contig6483.14071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8434bp|location=Sequence derived from alignment at H-elongata_contig6483:1087..9520+ (Himanthalia elongata Himel1 dioecious)
ACAACATTCGCCAAATAAACAAGAACCGCTTTCGCCAAATAGACAAGGGG ATAGGCATCAAGACCGAATCTATCATATCGCACCGAAATCGGCGTTGGGC TCATCTGAGGCCGAAACAAGTGTTCGCTGACGAAGGCGAATAAATATTTT GGCTATATACGGCATACGGGCAACAACCGTAAAGCTCGAAATCTACGCTA GTAGACTCATATCAAGCAGCAGCAGCAACAGGAGGAGCGCCATGTCTCTA CATCTACCAGAATCGGTTGCCCTCCTGGCCTTGTCAATCACGACACTAGC CGTGGTACTGGTGGGTATCGAGCGAAGTCGAGCCCGCCGCCCGGGAGATT CGCGCTCCGGATTATCGAATGATACATTCGCGTCGGCGATTGCGACACCC GGATCCATGGCGCCCGACGACGGCTGCGATGACGTACTCGTGCATTGCTC AACGCCACACCCGTTGGAACGGACGAGACCACTGACACAATCTGCAAAGA CTGGGGCACGTGGAAACGATGTTTCACCGCGGCGCTGGCGGCGTCAGTGT CGCTGCATCTCTCAAGGCGGGCCATTCCAGGCGATTCCAATTGTTCCCAG CGAAGATGAGAAAGCAATGGTACCGGTTCGAACTATGAACAACAAGAGCT GCTGCTGCCACTGCTGCTGCTGTCGGGACTTGGAGCAGGCTCGTTACGGT CATCGTCGAGGCAATGATGGTGTCGAAAACGTTAGTGGCGACAGCGAAAA TCGCTTGGTACCACACGGGGACGATGACGATGGCTACGGCCGCGGAATGG CCGGTTCGGCGATAAGGTCGCCTCCGCTGGGGGCAACAACCCCGTTCTCG GGCGGTGGGGTTGAGGCTCGACGCTCGGGGGCTGCTCCTACGCTAACGCC AACATACCCGGCGCCGAACTCTAGCAAGGAGGCAACATCGTCTGCATCAA GCGGTCGACGCCTGGAGCTGCTCCTGCACAACGTCTCGCACAAGGATCTG GCTCTTTCACTCAGGAGGACGCTGTACCCGGCGGCGGTGGTTGGGAAGGG AACCGGAGAGAGGTACAACGCCATCGACGCGGTAAGCTTTTTCTGATCCC TGGTGTGTGTCACGAGTTCGAGCTCTACACAGAGGGCTGTTTGCACCAAA GTTCGCGAACCGACGCTGGTATTTTAGCTCCTCGTCCTACCAGTACACAA CAATGTTGAAGTTGGCTTTGTCCTCCTTTTTTATTTCTTTATTTATTCGT CTGACAGCTCTGTTGTCTGTCTCCTTTCCCTATTTATCTCTCCTATCTTG CCTCCCTCGTCGAAGAGTGTAGATATCCATGTATAAAAGTTAGTTTGGAT CTCGTAATCAACCAAACCTGCTGTCTGTGTGGGTATACGAGCGTGCTGCG TGTGTCACCACACAAGTTATCTTCGCACAAAGCTTGATATCTCCCTTACC GATAGTTACTATTGATATTATACTGCCCTCAGTATTCCTCAGGTCGGTCG ATATACTATACTATACTATACTATACTATAGTAGTACCAGGGGAAAACGC GAAGAGCCTCAGCTGACAGCAACCGATTTGTCGCGAAACCTCTGTCTCCG TTCGAAAACGGCAGGCATCGGGGAAACCCACATGCAAGCACTGACACACC CCCGAGGAAGCCAACGTCACTCGTTTTGTTCCATCTCCCACACATACATG GCTCCGTGGTGCCCCAAATAGTTTTCTACGCTTCTAGCTATACTCGCTAT ATTCTATGCTAACTCAACATCTCGGCATCCATGCTTAGAAGTCGGCTAAT CCTGTAAGGTTCGCGTCTGCGAGTCTCGAGTGCGTGATGGACGTGTTTGC ATGTCCCTGCGTACGGTTCGTGATTTATTCGATATTGAGATGAAAGAACA TGTATCATCTATTAATAGATCGCAATTACCATAGGCTTTGCGGAAGGAGA GTGAAGAAGTGTCCGAAAAGTGGTAAAATAAAGCCTAGAGCCTCTGTCTC TATGGATGATACGACATCATACCCTCGTGATAATACTAGTTCCTATTATG AAAACTGCAAAGCGACGCCAATATTCGAACAGGGCGATCAACGCCAGAAT CCCCAGAGGCAACTCCCGGACGACCTTTTTGAGAGCATGGCATTAGAGAC ACCGTGACCGGCGGGAGCTGGTGTCGAGGCGGTGGTTCCCATCGAGAGAG CTCTGTCGCATGTACCGGGCTATGTGTCACACGCCCAAATGACATTTGCG GAAGAGTAACACGTCACTCGCTCCGCCGGTAACTTGCGCTTGAATGTGAC GGTTGGTTTTTCCCGTCGCGTCTTCACACATTTCCCCCGTGTATCGACCC CTTCCCGCTCCCCTCTTGCCACGAACCAGCCCGATACAGCCTTGGCGCGG CCGAAGTTTAGCCGGTTCAAAGCCTCCAGCGAGATTATCCTCCAGAAGCT GGTGGAAATGAGGAAGTCGAGTGGGAGTGAACCCCCGCCAGCCGTGTGCG CGGTTTACCGCCGAGGGGAGGAGCCGGAGCAGGAACGGGAGGCGGAGCTC GCTCTGGGCAGGTAATCCGCATCTTCAATCCCCATGCTCACTATACAGCG GCAACAGCAGCAGCAGCAGCAACAGTCGCAGCAGCGTATGGTGTAGTATT TCTTCTCGAACGCCTTCGATACAAAACGTGACGCTATTTTTAGCGGCATC GCGATTGACGATCGCGAAATAGTCCCTTGCGAAGTAGTGGGGTCGAGAGC GCTGTCTCCGTTTTACCCTCCCCTGCTAAGGGGATCGGCCTTTGGAGATT TGTACGTCGACAGCGGGATTGGGGCGATGTTGGTAGGCCTGTAATTATTT TTCCCGTCAATGTCCAGCAGAGATAGTAAAGCAACAATAGTTCATATTTT TCCGAAGCCCCGTTTGTTTTATTTGGGGGGGGGGGGGGGGGGGGGAATTT TTTTTTCGGGGGAATAGTAAAAACCCCTGACNNNNNNNNNNTTTTTTTCC CCGTACAGCCCCAGAAGAAAAAGAAAAAACCAAATTTTTCTTTTTTTCGA CCCTCCCGTTTTTTTTGTGGGGGGGGGGGGGGGGGTAGCGAATTATCGTC TACGAGGAATTAGTAACATCCCTGACCAGGCGTTGCCTCGATGTCTGTCT CCACCCTTGCGCTCCTCTCTTCCTCGTCATTCTCTCCCCTGTCCCTTCCT CATGATGCCGCGATGAACGTTTCACTACTGGCACGTACGCGTACGCCCGA TTCATGGGGTGGGGGACTCGCCGTCCGTTCGCCAACGCCCTTACGGTTGC GTCGACAGCGCCAAGGACACTGGAGGTGTCGATAACGATCCAAGCAACCC ATCCGCCGCCGACAATAGAGAAAATCACAATTGCGATGACATGGACGGGA CAAACGCTGTAAACGGTAAACAGCGAGAACAGCAGCAGCAGCAGCAGCAG CGGCATCGGCGTCGGCAGTTGTCGGTGGGCTTCGACCTCGACACCAACCC CATCCCGGTCTCCGACCTAGCCGGGTACCGCGTGCGCAGCAGGGATCTCG ATCGCCTCACCTCCGCTGATGAAAAACACGCGTCGAACTCGCACATCGCC AGAACCAGGCAAGACTCTGAGGGTGGTGATATAGCGCACGCGTGGCGCTA TCCCTTGGTAGCGAGGGGTCCGGGGGACGCGATGAGTCCGGGACCGCGGT TGGGAGAAGGATGGCGAGATGGAGAAGGCGGAGAAGGGTTCATCACCGGG GTGTATTTCCCGTTGCTCTCGGTGCTGATGCCTCGGTGGCTGAAGCAGGT GCGTGCCGGATATTCAAGATTATATTGCAGAATAGGGAGGGAGATAGAGA AAATAAATTATATTGAATCGATGTTTGTGTCAATTTTCTAACTCTCGCTT GTTCATTTTCTGCTTCTTTTTTGTGTTTGTATGAGTGTGTGCATGTGCGA AGACGGGTTTCGCCTTCGCCTGGCTGGCTTTTGCCTCGAATAGACTATGT TATCGGGCTGGCGCGCGTGCGACGAGTCTGACTCGTTTGGTGATGACCCG GCACGATTTCTGATTCCCTTCTCTCCAACTACCCGGATGTTTCGCGGTCA AGCATCGTCTCGGACTTTCTTCTGTTTGCCTGCCTTGCTCGCTTTCTCGA CCGGTAAAAGTTGGCTGAAAATGGAAACTGCAACGCGGCGAAGATGATCT TGCTCGTGAGTGGAGTGGGCAAGCCACGTAGTCAGGAGCACCGCGTGGAA GACAATTCTACGGAGGTAAGCCAGGAGGGAGTGGAAGAGGAAGAGCGAAA AGACATGTAACACAGGAGGACGTCAAACTAGCAACGATGATAGCTACTAC TCTGCATCAAGAGAAAATAATGTCTTTATGTTCTGTCCCCAACAGCGGTC AGTGGTCGGTGATTCGACGACAGGTGACTGCCGTGCTCATGGAAGCGTAC CTCAAGAGACATTACCCGGACGTGCGGGTCGTCAGGCTGCACTCCAACAC TAACATTTTCAGGTGCAGCAAGCAAACCAGTGATGGTGACGTCACCGGAA ATCGCGCTTCGCGCACCGTCTCTGAGAGCTATTCCCATAACCTGTCTGCA CAAAAAAATGATAATGTGTTCGTCGCGCGACCTAGTGTCGACTCCCTTGG CGTTACTGGTCGTTTTCTTCTTCGTTTCCACCGACCGCGAGCTACGCCTA GGAGCCAACAAGCCAGCCAGCCAGCGGCCACGGACGAACACAAGATTCTA AGTCGTATATTTGAACCCGCGTGGTGGTAATCGGAACGTGCCTATAGAAA ATAGGGCTAAAACCAGTGCGCGGCGAAAGCCCCCAGGAGCGCGGTGGAAC TATGACGGCGCCCCAGTCTATTAGAGTATAGCGCAGCGTAAGTGGCAGTG TAGATCAAGTATACAACGCAATGACATCATTTCATCCACCTGTCTTCCCG ACGAGCTCACGATCGATCTGAAATAAGGAGTTTATACGAGGGGCGGTTTT CCTGTGGCAGGTATGATGACAACATACGATTTGTCAAGACAGAGCTCTTG CCTTTCCTCGAGACTGAGCGCAGCCGGACAGCGGAGAGATACGGGTCAGC CTGGCAGGTAGACATTTCATTGGGGGGAGGGGTGGGGGTGTCCAGCATAT TTTTACCGCTTACACCGTTTTTCGGTCGAGTGATTCTCACCTAGAGAGCG CGAAAGAATGATGACCCGCACGCCAACGATCCTTTCTTACATTTAGTTTT CTTGGTCAGAGCTGACGAGGGTGCGCGCGTAAGGCAACGCCCAAGTGTAT ACGAGTCGAGTCGTTCTCTACCGTTGGCACAATCGCAGTTTGAAACGTTT TGAGAAGCGCGGAGTCTGATATCATTTCATCCCATATCATCCCATATCAT CCCATTCCATCAAATCGATCTCAGTCCGATTCCATCTTATACCATCATAC CCTTCTCGATCACGGCTGGACGTTATGTCATTCTACGTTTATGGCGCGTC GAATGATCGATCACGGCCAGGACATGATGCACGTCACCATGAGCTTCGCC GACGGGTCGCCGGCACGAATCTCGTCGATCAAGGCGGCCCTGAGGCCGTT CCGACCGTCCTTCATTCACATCTGGGAGCTCAAAACCTTTTGGCACGAGA AGATCATCTGCGAGGATGACGTCGAGGCGAGGGCTCTAAATTGGTGAAGT GCGGGGGGGGGGGGGTTATGCTGTAATAGTGTTAAAGGCATGCCGCATCC TAACCGATATAGACCACCCGTACTGACAATACCGGTACGGAGCCATGCCA GTTTTTCATCGACCAATTCGGGGGGCGGGGTAGAGGGGAGATCTCATCGT AGCGGTCCCTCTTGCGCTAATAAAGAAAAGAATGCTCAGTCCGTTGGCCA TCGCTCACCGATCCAAAAATGTTTATTGGTTTGTTGGCATTTGTCTAAGC ACACACAGTCAGCAGCCTGGCCACCGCTGATTGCGAATGGTACATCTCTT CTTATGTGCGTGTATGGAGGGTTGTTCCCCCCCCCCATCCTGTGCATTGA AATGTCGATATCACGAGCGTCAAGACTGAAACAAATCGCTTATCCATCAC CCACATGTATTCATATACGAAGTATATATCATAGATACTGAGTTAGTGTG CTTGTCGAAAACATTAGTCACACCCCTTGCCCTCCTCCCTCTCCAACCCC CACCCTCCCCCCAGCAAAACAAAAAAGAAAAGCACCAAACAAGAAAAAAC AGCGAAGATCGTTATATTTTGGATCGTTCGTGGCGTGCAGGTGCACACCT TCGACGAGATCGACATGCTCCCGCCAATACCGGCTCCCGAGGTGGACCCC TCGACCGCCCTCGTCATCGCGGAGATGCTGCGCCTCAAGGAAGACTGGGA GCGCGTTCTCGCAGCTCCTTCCCCTCCGCAGCGAGGTGTATTGTTTGTCT ATGTACGTGTGTGTGTGTGTCTTTATTAAATTGCACCTAACCATGCAATC CATCCCTGTCATGCTAATCATTCTATGCCACTCGTATTAGCTCTGAAACC TCGAGCACATACGCCGAACCACGAGCCACGGACCGAATTAGTAAACATTG AGCGGCAAACGGGAAACGAAAAAAATGGGCACTGACGGTGCCCTCTCTAC TCCCCACCCGAACGAATTTTGTAGCTATCGCCGGCCGAGACGCTACAAAC GACCTCGCTAGCTTCTGGCTGAGGAAAACGAAAAAACCCGTGCTTGCGGT GCTCCTGGTGCAGAAGAAAGGCTGCCAGCCAAAGCTGTACCGAGGGACAA ACATGGAGGTACTGACGCTATGGTGTAAAGTAGGCGCGCTCCGCGAATCT ACGACACGGTTCGGTCCATGTTGCTGTGAATCCCCGCCGGCCTCCCTCCA TGGACCAGAAATTCCCGCTTGGCGTTAGGTAGCGCAGGGGCGGCTCCGCC ATTCTTTTTGTTTTGTTGGCGATCTAGCCCACCTGAAAGAGCGGTGGTCT GTCTTCTTAGGCGCGAGTGCCGTTTCTCTTTTTATCGTGTCAAGCTCCAG GGCTGTCCGCCCGTTGGCACCCTTACCCGTGATTGGAACGGAGGCGTTTT TCGAGCGACATTGCAGACACCTCTAGTCACACTTTTCCTCCTGATTCATT GCATCCGCGTGTCTTATAAAATCGTGCTATCTATACATTGATGTTTGTGC GCGGTGCTTGGATTGCTCAACGTCAGGTGTCCATGCCGACGGGATCTCTG TGCGCTGAGCGGAACGTGATCGGCTCCGCGCTTTCCGACGAATTCTCCCT CCTCCGCAGGGAAATCAAGGCGGTCGCCGTCCTCTCGCTGCCGCGCCTCG ATAAGATTTCGTCGTCTAACAAAATCACCGCCAGCGCTGTCTTGTCGTCG GCAGCTGTCGCACCCACGGCCGGTGACGGTGAGAATTACAAGGACTGCCT CAACGCGGCCGCGATACTGTTGACGCGTGGCGGCGGGGGAAGGAGCTTGG TCGGGTTGACACCAGCGGCGATCTCGGAGTCGGAGTCTTCTATGCAGTCT AGGAACGTGTCTCCGTTCGAGGTGACGCCCACGCTGACCACGTCGCCAAC GTGGCCGCGTCGTCTTGGTGGAGAGAGAGTAAGCAGGGGCGCCGCCGGTA CACTTGGTCGGCATGGCACTATCTCCTTTTGGGATTCGCGAGATGAGGAT TGTAGAGAAGGAGGAGGAGGAGACGTGCAAGGCGTGGCGGCAGCTGATAA GAAACGACTGGAAGGCGTTCCTCAGGTAAAGTGTGCCTTGCATCACGTCA CAACACATGATCGCTTCGTGATCTTGCCTTCTCGGCGGCCTCTTTGCCTG ATGAATATAGACACGATTCCCTTAGTCGTGCGCTTTGTCCAACTAAAGTA CGTGTATCAATCTAGATACCCCGTAACTCCACCGAATTTGCGTGCCAGGA ACTATTTGCGGCGGAACCGGAAGACCGCGCTTCGAAAAGAGCCACAACCG AGGCTTCACCGCACCCAGCGGAAGCTTTGGAATCACCGAGCGACGGGCAG CAGAGGCAGAAAACTCGAGGTCGGGAGACGCGGACAGAGGAAGAAGACCA CGGCGCAATCGTCGGCCCTCGATCGACGAATCCGCGCTTCCGCTCAAAGT CGTGCGAACCCCTCGTCAGTCGAGCCAAAAGCAAGCAGGCGCTAGAAGGC GGCGGCGACGGTGAGAGCGGCCGTTCGGAGGGGGTCCCCGCGCGACAAAT CCATAGCAACGTCGTTGCCCGCGTCCCCGCAAAGACTCCGTGCTCCAACC CGTTGAAGCCGTGCGGTGCATGCATGGAGTGGCTGAAGAAGATAGCGGAG GTCAACCCGGACTTCAAGGTCATCACGTTCACGGATTCCTTCTGCAGCGG CGTCTACATCGAGAACGTCGCCCAGGTTCTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6483:1087..9520+

>mRNA_H-elongata_contig6483.14071.1 ID=mRNA_H-elongata_contig6483.14071.1|Name=mRNA_H-elongata_contig6483.14071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6816bp|location=Sequence derived from alignment at H-elongata_contig6483:1087..9520+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTACATCTACCAGAATCGGTTGCCCTCCTGGCCTTGTCAATCAC
GACACTAGCCGTGGTACTGGTGGGTATCGAGCGAAGTCGAGCCCGCCGCC
CGGGAGATTCGCGCTCCGGATTATCGAATGATACATTCGCGTCGGCGATT
GCGACACCCGGATCCATGGCGCCCGACGACGGCTGCGATGACGTACTCGT
GCATTGCTCAACGCCACACCCGTTGGAACGGACGAGACCACTGACACAAT
CTGCAAAGACTGGGGCACGTGGAAACGATGTTTCACCGCGGCGCTGGCGG
CGTCAGTGTCGCTGCATCTCTCAAGGCGGGCCATTCCAGGCGATTCCAAT
TGTTCCCAGCGAAGATGAGAAAGCAATGGTACCGGTTCGAACTATGAACA
ACAAGAGCTGCTGCTGCCACTGCTGCTGCTGTCGGGACTTGGAGCAGGCT
CGTTACGGTCATCGTCGAGGCAATGATGGTGTCGAAAACGTTAGTGGCGA
CAGCGAAAATCGCTTGGTACCACACGGGGACGATGACGATGGCTACGGCC
GCGGAATGGCCGGTTCGGCGATAAGGTCGCCTCCGCTGGGGGCAACAACC
CCGTTCTCGGGCGGTGGGGTTGAGGCTCGACGCTCGGGGGCTGCTCCTAC
GCTAACGCCAACATACCCGGCGCCGAACTCTAGCAAGGAGGCAACATCGT
CTGCATCAAGCGGTCGACGCCTGGAGCTGCTCCTGCACAACGTCTCGCAC
AAGGATCTGGCTCTTTCACTCAGGAGGACGCTGTACCCGGCGGCGGTGGT
TGGGAAGGGAACCGGAGAGAGGTACAACGCCATCGACGCGATGTCTCTAC
ATCTACCAGAATCGGTTGCCCTCCTGGCCTTGTCAATCACGACACTAGCC
GTGGTACTGGTGGGTATCGAGCGAAGTCGAGCCCGCCGCCCGGGAGATTC
GCGCTCCGGATTATCGAATGATACATTCGCGTCGGCGATTGCGACACCCG
GATCCATGGCGCCCGACGACGGCTGCGATGACGTACTCGTGCATTGCTCA
ACGCCACACCCGTTGGAACGGACGAGACCACTGACACAATCTGCAAAGAC
TGGGGCACGTGGAAACGATGTTTCACCGCGGCGCTGGCGGCGTCAGTGTC
GCTGCATCTCTCAAGGCGGGCCATTCCAGGCGATTCCAATTGTTCCCAGC
GAAGATGAGAAAGCAATGGTACCGGTTCGAACTATGAACAACAAGAGCTG
CTGCTGCCACTGCTGCTGCTGTCGGGACTTGGAGCAGGCTCGTTACGGTC
ATCGTCGAGGCAATGATGGTGTCGAAAACGTTAGTGGCGACAGCGAAAAT
CGCTTGGTACCACACGGGGACGATGACGATGGCTACGGCCGCGGAATGGC
CGGTTCGGCGATAAGGTCGCCTCCGCTGGGGGCAACAACCCCGTTCTCGG
GCGGTGGGGTTGAGGCTCGACGCTCGGGGGCTGCTCCTACGCTAACGCCA
ACATACCCGGCGCCGAACTCTAGCAAGGAGGCAACATCGTCTGCATCAAG
CGGTCGACGCCTGGAGCTGCTCCTGCACAACGTCTCGCACAAGGATCTGG
CTCTTTCACTCAGGAGGACGCTGTACCCGGCGGCGGTGGTTGGGAAGGGA
ACCGGAGAGAGGTACAACGCCATCGACGCGCCCGATACAGCCTTGGCGCG
GCCGAAGTTTAGCCGGTTCAAAGCCTCCAGCGAGATTATCCTCCAGAAGC
TGGTGGAAATGAGGAAGTCGAGTGGGAGTGAACCCCCGCCAGCCGTGTGC
GCGGTTTACCGCCGAGGGGAGGAGCCGGAGCAGGAACGGGAGGCGGAGCT
CGCTCTGGGCAGCCCGATACAGCCTTGGCGCGGCCGAAGTTTAGCCGGTT
CAAAGCCTCCAGCGAGATTATCCTCCAGAAGCTGGTGGAAATGAGGAAGT
CGAGTGGGAGTGAACCCCCGCCAGCCGTGTGCGCGGTTTACCGCCGAGGG
GAGGAGCCGGAGCAGGAACGGGAGGCGGAGCTCGCTCTGGGCAGCGCCAA
GGACACTGGAGGTGTCGATAACGATCCAAGCAACCCATCCGCCGCCGACA
ATAGAGAAAATCACAATTGCGATGACATGGACGGGACAAACGCTGTAAAC
GGTAAACAGCGAGAACAGCAGCAGCAGCAGCAGCAGCGGCATCGGCGTCG
GCAGTTGTCGGTGGGCTTCGACCTCGACACCAACCCCATCCCGGTCTCCG
ACCTAGCCGGGTACCGCGTGCGCAGCAGGGATCTCGATCGCCTCACCTCC
GCTGATGAAAAACACGCGTCGAACTCGCACATCGCCAGAACCAGGCAAGA
CTCTGAGGGTGGTGATATAGCGCACGCGTGGCGCTATCCCTTGGTAGCGA
GGGGTCCGGGGGACGCGATGAGTCCGGGACCGCGGTTGGGAGAAGGATGG
CGAGATGGAGAAGGCGGAGAAGGGTTCATCACCGGGGTGTATTTCCCGTT
GCTCTCGGTGCTGATGCCTCGGTGGCTGAAGCAGCGCCAAGGACACTGGA
GGTGTCGATAACGATCCAAGCAACCCATCCGCCGCCGACAATAGAGAAAA
TCACAATTGCGATGACATGGACGGGACAAACGCTGTAAACGGTAAACAGC
GAGAACAGCAGCAGCAGCAGCAGCAGCGGCATCGGCGTCGGCAGTTGTCG
GTGGGCTTCGACCTCGACACCAACCCCATCCCGGTCTCCGACCTAGCCGG
GTACCGCGTGCGCAGCAGGGATCTCGATCGCCTCACCTCCGCTGATGAAA
AACACGCGTCGAACTCGCACATCGCCAGAACCAGGCAAGACTCTGAGGGT
GGTGATATAGCGCACGCGTGGCGCTATCCCTTGGTAGCGAGGGGTCCGGG
GGACGCGATGAGTCCGGGACCGCGGTTGGGAGAAGGATGGCGAGATGGAG
AAGGCGGAGAAGGGTTCATCACCGGGGTGTATTTCCCGTTGCTCTCGGTG
CTGATGCCTCGGTGGCTGAAGCAGTTGGCTGAAAATGGAAACTGCAACGC
GGCGAAGATGATCTTGCTCGTGAGTGGAGTGGGCAAGCCACGTAGTCAGG
AGCACCGCGTGGAAGACAATTCTACGGAGTTGGCTGAAAATGGAAACTGC
AACGCGGCGAAGATGATCTTGCTCGTGAGTGGAGTGGGCAAGCCACGTAG
TCAGGAGCACCGCGTGGAAGACAATTCTACGGAGGTGACTGCCGTGCTCA
TGGAAGCGTACCTCAAGAGACATTACCCGGACGTGCGGGTCGTCAGGCTG
CACTCCAACACTAACATTTTCAGGTGACTGCCGTGCTCATGGAAGCGTAC
CTCAAGAGACATTACCCGGACGTGCGGGTCGTCAGGCTGCACTCCAACAC
TAACATTTTCAGGTATGATGACAACATACGATTTGTCAAGACAGAGCTCT
TGCCTTTCCTCGAGACTGAGCGCAGCCGGACAGCGGAGAGATACGGGTCA
GCCTGGCAGGTATGATGACAACATACGATTTGTCAAGACAGAGCTCTTGC
CTTTCCTCGAGACTGAGCGCAGCCGGACAGCGGAGAGATACGGGTCAGCC
TGGCAGGACATGATGCACGTCACCATGAGCTTCGCCGACGGGTCGCCGGC
ACGAATCTCGTCGATCAAGGCGGCCCTGAGGCCGTTCCGACCGTCCTTCA
TTCACATCTGGGAGCTCAAAACCTTTTGGCACGAGAAGATCATCTGCGAG
GATGACGTCGAGGACATGATGCACGTCACCATGAGCTTCGCCGACGGGTC
GCCGGCACGAATCTCGTCGATCAAGGCGGCCCTGAGGCCGTTCCGACCGT
CCTTCATTCACATCTGGGAGCTCAAAACCTTTTGGCACGAGAAGATCATC
TGCGAGGATGACGTCGAGGTGCACACCTTCGACGAGATCGACATGCTCCC
GCCAATACCGGCTCCCGAGGTGGACCCCTCGACCGCCCTCGTCATCGCGG
AGATGCTGCGCCTCAAGGAAGACTGGGAGCGCGTTCTCGCAGCTCCTTCC
CCTCCGCAGCGAGGTGCACACCTTCGACGAGATCGACATGCTCCCGCCAA
TACCGGCTCCCGAGGTGGACCCCTCGACCGCCCTCGTCATCGCGGAGATG
CTGCGCCTCAAGGAAGACTGGGAGCGCGTTCTCGCAGCTCCTTCCCCTCC
GCAGCGAGCTATCGCCGGCCGAGACGCTACAAACGACCTCGCTAGCTTCT
GGCTGAGGAAAACGAAAAAACCCGTGCTTGCGGTGCTCCTGGTGCAGAAG
AAAGGCTGCCAGCCAAAGCTGTACCGAGGGACAAACATGGAGCTATCGCC
GGCCGAGACGCTACAAACGACCTCGCTAGCTTCTGGCTGAGGAAAACGAA
AAAACCCGTGCTTGCGGTGCTCCTGGTGCAGAAGAAAGGCTGCCAGCCAA
AGCTGTACCGAGGGACAAACATGGAGGTGTCCATGCCGACGGGATCTCTG
TGCGCTGAGCGGAACGTGATCGGCTCCGCGCTTTCCGACGAATTCTCCCT
CCTCCGCAGGGAAATCAAGGCGGTCGCCGTCCTCTCGCTGCCGCGCCTCG
ATAAGATTTCGTCGTCTAACAAAATCACCGCCAGCGCTGTCTTGTCGTCG
GCAGCTGTCGCACCCACGGCCGGTGACGGTGAGAATTACAAGGACTGCCT
CAACGCGGCCGCGATACTGTTGACGCGTGGCGGCGGGGGAAGGAGCTTGG
TCGGGTTGACACCAGCGGCGATCTCGGAGTCGGAGTCTTCTATGCAGTCT
AGGAACGTGTCTCCGTTCGAGGTGACGCCCACGCTGACCACGTCGCCAAC
GTGGCCGCGTCGTCTTGGTGGAGAGAGAGTAAGCAGGGGCGCCGCCGGTA
CACTTGGTCGGCATGGCACTATCTCCTTTTGGGATTCGCGAGATGAGGAT
TGTAGAGAAGGAGGAGGAGGAGACGTGCAAGGCGTGGCGGCAGCTGATAA
GAAACGACTGGAAGGCGTTCCTCAGGTAAAGTGTGCCTTGCATCACGTCA
CAACACATGATCGCTTCGTGATCTTGCCTTCTCGGCGGCCTCTTTGCCTG
ATGAATATAGACACGATTCCCTTAGTCGTGTCCATGCCGACGGGATCTCT
GTGCGCTGAGCGGAACGTGATCGGCTCCGCGCTTTCCGACGAATTCTCCC
TCCTCCGCAGGGAAATCAAGGCGGTCGCCGTCCTCTCGCTGCCGCGCCTC
GATAAGATTTCGTCGTCTAACAAAATCACCGCCAGCGCTGTCTTGTCGTC
GGCAGCTGTCGCACCCACGGCCGGTGACGGTGAGAATTACAAGGACTGCC
TCAACGCGGCCGCGATACTGTTGACGCGTGGCGGCGGGGGAAGGAGCTTG
GTCGGGTTGACACCAGCGGCGATCTCGGAGTCGGAGTCTTCTATGCAGTC
TAGGAACGTGTCTCCGTTCGAGGTGACGCCCACGCTGACCACGTCGCCAA
CGTGGCCGCGTCGTCTTGGTGGAGAGAGAGTAAGCAGGGGCGCCGCCGGT
ACACTTGGTCGGCATGGCACTATCTCCTTTTGGGATTCGCGAGATGAGGA
TTGTAGAGAAGGAGGAGGAGGAGACGTGCAAGGCGTGGCGGCAGCTGATA
AGAAACGACTGGAAGGCGTTCCTCAGGTAAAGTGTGCCTTGCATCACGTC
ACAACACATGATCGCTTCGTGATCTTGCCTTCTCGGCGGCCTCTTTGCCT
GATGAATATAGACACGATTCCCTTAGTCATACCCCGTAACTCCACCGAAT
TTGCGTGCCAGGAACTATTTGCGGCGGAACCGGAAGACCGCGCTTCGAAA
AGAGCCACAACCGAGGCTTCACCGCACCCAGCGGAAGCTTTGGAATCACC
GAGCGACGGGCAGCAGAGGCAGAAAACTCGAGGTCGGGAGACGCGGACAG
AGGAAGAAGACCACGGCGCAATCGTCGGCCCTCGATCGACGAATCCGCGC
TTCCGCTCAAAGTCGTGCGAACCCCTCGTCAGTCGAGCCAAAAGCAAGCA
GGCGCTAGAAGGCGGCGGCGACGGTGAGAGCGGCCGTTCGGAGGGGGTCC
CCGCGCGACAAATCCATAGCAACGTCGTTGCCCGCGTCCCCGCAAAGACT
CCGTGCTCCAACCCGTTGAAGCCGTGCGGTGCATGCATGGAGTGGCTGAA
GAAGATAGCGGAGGTCAACCCGGACTTCAAGGTCATCACGTTCACGGATT
CCTTCTGCAGCGGCGTCTACATCGAGAACGTCGCCCAGGTTCTGTGAATA
CCCCGTAACTCCACCGAATTTGCGTGCCAGGAACTATTTGCGGCGGAACC
GGAAGACCGCGCTTCGAAAAGAGCCACAACCGAGGCTTCACCGCACCCAG
CGGAAGCTTTGGAATCACCGAGCGACGGGCAGCAGAGGCAGAAAACTCGA
GGTCGGGAGACGCGGACAGAGGAAGAAGACCACGGCGCAATCGTCGGCCC
TCGATCGACGAATCCGCGCTTCCGCTCAAAGTCGTGCGAACCCCTCGTCA
GTCGAGCCAAAAGCAAGCAGGCGCTAGAAGGCGGCGGCGACGGTGAGAGC
GGCCGTTCGGAGGGGGTCCCCGCGCGACAAATCCATAGCAACGTCGTTGC
CCGCGTCCCCGCAAAGACTCCGTGCTCCAACCCGTTGAAGCCGTGCGGTG
CATGCATGGAGTGGCTGAAGAAGATAGCGGAGGTCAACCCGGACTTCAAG
GTCATCACGTTCACGGATTCCTTCTGCAGCGGCGTCTACATCGAGAACGT
CGCCCAGGTTCTGTGA
back to top