mRNA_H-elongata_contig6479.14069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6479.14069.1
Unique NamemRNA_H-elongata_contig6479.14069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7J5XQP8_DISMA (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XQP8_DISMA)

HSP 1 Score: 99.0 bits (245), Expect = 1.710e-22
Identity = 84/113 (74.34%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVK 339
            M D+AVL   FSRD E LATG+ DGKIKVWKI +GQCLRRFE AH++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTS+VN A +  DG  V++ S+DGTVK
Sbjct:  175 MMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSFVNEATFTPDGHHVISASSDGTVK 287          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A2C6KMV8_9APIC (WD40 repeat-containing protein SMU1 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KMV8_9APIC)

HSP 1 Score: 95.5 bits (236), Expect = 1.320e-21
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            MH+ AV++  FSRD E LATGS DG++KVW ++TGQC R+F+ AH  XXXXXXXXXXXXXXXXXXXX              KEFRGH ++VN A+Y+ D  +VVTGSADG VKV
Sbjct:    2 MHETAVVAVEFSRDSEVLATGSQDGQLKVWLVATGQCARKFDRAHDXXXXXXXXXXXXXXXXXXXXXTTARIHGLKSGKTLKEFRGHLTFVNCALYLPDNTRVVTGSADGRVKV 115          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A067BYK7_SAPPC (WD40 repeat-containing protein SMU1 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BYK7_SAPPC)

HSP 1 Score: 95.1 bits (235), Expect = 3.260e-21
Identity = 77/114 (67.54%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            MH+  V +  FSRDG+ LAT S DGK+KVWK+STGQCLRRFE AH        XXXXXXXXXXXXXXXXXXXXXXXXXXXX EF GH  YVN AV+  D  KV++ S DGT+KV
Sbjct:   35 MHEVGVSAEAFSRDGDLLATASVDGKVKVWKLSTGQCLRRFEHAHGNSIHSICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFHGHDGYVNHAVFSTDASKVISASCDGTLKV 148          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A0R3XAU4_HYDTA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3XAU4_HYDTA)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    7 DEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            D AVL   FSRD E LA+GS DGK+K+W+I +GQCLRRFE AHT+                                  KEF GHT +VN  V+  DG  V++GSADG+V++
Sbjct:    2 DTAVLCLAFSRDSELLASGSMDGKVKIWRIQSGQCLRRFEKAHTKGVTAAHFSMDNVQLLTASYDHTIRIHGMKSGNLLKEFVGHTGFVNDVVFSPDGRHVLSGSADGSVRI 113          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S2P5I5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5I5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.320e-19
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            +HD AVL+  FSRDGE LATGS+DG ++VWKI TG+CLR+FE AH+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RGHTSY+NT  Y+ +  K+ T +ADGTV++
Sbjct:  166 LHDTAVLAINFSRDGEMLATGSSDGMVRVWKIMTGKCLRQFEHAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHTSYINTCTYVNEM-KIATSAADGTVRI 278          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S2UR72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR72_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.270e-19
Identity = 63/132 (47.73%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGK------------------VVTGSADGTVKV 342
            +H+ AVL+ T + DG  L +GS DG IKVWKI+TG CLR+ + AH            XXXXXXXXXXX             KEFRGHTSYVNT  Y LD G+                  VVTGSADGTV+V
Sbjct:  120 LHETAVLALTVTADGTMLCSGSVDGTIKVWKIATGTCLRQMDRAHAGAISCVAFSPDXXXXXXXXXXXTCREFGLRASRMLKEFRGHTSYVNTCAYALDNGRNSNSXXXXXXXXXGPNLLVVTGSADGTVRV 251          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A7AQS6_BABBO (WD40 repeat-containing protein SMU1 n=1 Tax=Babesia bovis TaxID=5865 RepID=A7AQS6_BABBO)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-18
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            +HD  ++S   SRD E LA+G  DG IK+WKI+TG+C+R+ + AH                                    KEF+GH S VN A+Y  DG KV+TGS+DG +KV
Sbjct:  273 LHDTLIVSLAVSRDSEILASGDKDGNIKIWKIATGECMRKMDNAHDGAVTCMTFSRNSMSLLTGSFDKTAKIHGLKSGRSIKEFKGHHSIVNAAIYSYDGNKVITGSSDGYIKV 386          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S0WFI9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WFI9_9CRYP)

HSP 1 Score: 88.2 bits (217), Expect = 2.380e-18
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            MH++AVLS  +S+D E +ATG   GKIK+WK+ TGQC+R+FE AH Q                                  KE RGH+SY+N   Y  DG ++ +  +DG VKV
Sbjct:  156 MHEDAVLSLAWSKDSEIVATGDQAGKIKIWKVRTGQCVRKFERAHVQGVTCLAFSRDSTQLCSASYDASMRMHGLKSGKTLKEMRGHSSYINHCSYTADGLRICSSGSDGWVKV 269          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A812D2T2_SEPPH (SMU1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D2T2_SEPPH)

HSP 1 Score: 87.0 bits (214), Expect = 1.390e-17
Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKVNKYFF 357
            M D+AVL   FSRD E LATGS DGKIKVWK+ TGQCLR+FE AH +   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  FRGH+S+VN AV+  DG  +++ S+      N++FF
Sbjct:  225 MMDDAVLCMCFSRDSEMLATGSQDGKIKVWKLLTGQCLRKFERAHAKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGHSSFVNDAVFTQDGHHIISASS------NRHFF 337          
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A6P6RSL7_9EIME (FACT complex subunit n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RSL7_9EIME)

HSP 1 Score: 86.3 bits (212), Expect = 3.160e-17
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
            MH+ AV++  FSRD E LATGS  G++KVW ++TGQC+++ + A   XXXXXXXXXXXXXXXXXX                KEFRGH ++VN A+Y+ D  +++TGSADG VK+
Sbjct:  111 MHETAVVAIAFSRDSEALATGSQTGQLKVWLVATGQCIKKIDKAXXXXXXXXXXXXXXXXXXXXXFDTTARIHGLKAGKTLKEFRGHLTFVNCAIYLPDNSRILTGSADGKVKL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J5XQP8_DISMA1.710e-2274.34Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
A0A2C6KMV8_9APIC1.320e-2160.53WD40 repeat-containing protein SMU1 n=1 Tax=Cystoi... [more]
A0A067BYK7_SAPPC3.260e-2167.54WD40 repeat-containing protein SMU1 n=1 Tax=Saprol... [more]
A0A0R3XAU4_HYDTA1.230e-2042.86WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A7S2P5I5_9STRA6.320e-1971.05WD40 repeat-containing protein SMU1 n=1 Tax=Leptoc... [more]
A0A7S2UR72_9STRA7.270e-1947.73Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A7AQS6_BABBO1.240e-1838.60WD40 repeat-containing protein SMU1 n=1 Tax=Babesi... [more]
A0A7S0WFI9_9CRYP2.380e-1838.60Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A812D2T2_SEPPH1.390e-1766.39SMU1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A6P6RSL7_9EIME3.160e-1752.63FACT complex subunit n=1 Tax=Cyclospora cayetanens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6479contigH-elongata_contig6479:8631..10264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score88.2
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog5865.XP_001610463.1
KEGG koko:K13111
EggNOG free text desc.Lissencephaly type-1-like homology motif
EggNOG OGs3KBQJ@422676,3YA7T@5794,3Z42D@5863,KOG0275@1,KOG0275@2759
COG Functional cat.S
Best tax levelPiroplasmida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6479.14069.1prot_H-elongata_contig6479.14069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6479 8631..10264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.7446358-CDS-H-elongata_contig6479:8630..86991622931033.7446358-CDS-H-elongata_contig6479:8630..8699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 8631..8699 +
1691679670.3518682-CDS-H-elongata_contig6479:8630..86991691679670.3518682-CDS-H-elongata_contig6479:8630..8699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 8631..8699 +
1622931033.763236-CDS-H-elongata_contig6479:9622..98081622931033.763236-CDS-H-elongata_contig6479:9622..9808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 9623..9808 +
1691679670.3654287-CDS-H-elongata_contig6479:9622..98081691679670.3654287-CDS-H-elongata_contig6479:9622..9808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 9623..9808 +
1622931033.7760868-CDS-H-elongata_contig6479:10159..102641622931033.7760868-CDS-H-elongata_contig6479:10159..10264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 10160..10264 +
1691679670.3728814-CDS-H-elongata_contig6479:10159..102641691679670.3728814-CDS-H-elongata_contig6479:10159..10264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6479 10160..10264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6479.14069.1

>prot_H-elongata_contig6479.14069.1 ID=prot_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQGVT
SLAFARDGSQLLSASMDQTARIHGLKSGKMLKEFRGHTSYVNTAVYMLDG
GKVVTGSADGTVKVNKYFF*
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mRNA from alignment at H-elongata_contig6479:8631..10264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6479.14069.1 ID=mRNA_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1634bp|location=Sequence derived from alignment at H-elongata_contig6479:8631..10264+ (Himanthalia elongata Himel1 dioecious)
ATGCACGACGAGGCCGTCCTGAGCGGCACCTTCAGCAGAGACGGCGAGCA CCTCGCCACCGGAAGCACGGTGAGGATACAGGGCAAGGGAAGGGGTTGCT GATCGTGTTTTTCGAGAAAGCTTCGGCTGTCGTGGAGAGATGAGATGAGA TTAGATGATCGCCGCAAATTGCCTGGGGTGAAGAGAGAGATATATGAGAT ACCACGCTCGCTCCTCGTCCTCCTCTTAAGAGCCGCTATTTCGAGAACAT GCCGTAAAGGTTTTCCTTTGGGAAAAGGAACAACTCACGTTGTGTTAAGC CCACTAGGCTCAGACCTCAGATTGAGACCCATCGCGTTGACAGCGAGTAC CTCCTATCTAACGCTCTGGGGTTTTTTGCACGGGAAGAGCTCGGCGCCTT GCTCTTAAACCTCCGTCACGGGCAGTTTCTACGCGCTGGCGTCTCGGAGG AGGGCGGCAAAGAGCTTCGTTCCTCGAGGGCAGTCGAACACCTTCTTGAC GTCGTGGTTGTATAATGTCGGAAATAATGAAAAAGGGACGCGACGGGGGG AAGGGGGACGGGTCTGCGTTTTAAAAGGTGTTCGTGTTGGGGGGCTTGGG GAGTGGGGGTGAGGGGGACAAGACTCTGTTCGGGAGCGTGCGCTAAAGTT GAGCGTGATATATATATATATATATATTTGGCGTGTAGGTATAACAGATG CCCTGTACGCACATATAATTAGTACACAGCTCTATATAGATAATGCATGT TTTTAGCGGGTACTAATTTATGTATAGCGTACGTTTTGTTTGTTTTACAT GAGCATCCCGCTCGTGTCTCCTGCTCGAGTCAACTCAATTCCCCGGGTGC AACATCTCGGCGAAGCAAGCACTCTTCGACACGGATGTATTTTGGATCCA GCTAACGAAGACGTTTGTCTTTCTTTGTCCACCGCCCTCCGCCCCCGCGC GCATTTCCCTCTATGCGTACCAACCCCTCGTCGCGAGCTCAGGATGGCAA GATAAAGGTCTGGAAGATTTCGACGGGTCAATGCCTCAGGCGCTTCGAGA TTGCGCACACGCAGGGGGTCACCTCGCTAGCTTTCGCGAGGGACGGGTCG CAGCTACTATCTGCCTCAATGGATCAGACGGCGCGTATTCACGGCCTCAA GTCTGGGAAGATGCTTAAGGAATTCAGGGTGAGAGGCGGGATAGGGGAGG GGGGAAAGAGAGGTGGCGTTACGGCGAGGACCCCGCCCCTCCCCTAGGCG TGATCTTCGATTGTCTTAGTGGAACCAATGAGCTGCAGCAAGTAGAGCAA AAAACACGCGAGAAGTACGCGAGCGCGGGTGCTTTCTATGGCGGCCTATT TTGTTTTGGATTGTATTACTGCGGGTGTGAGCGGTAGAGGAGACACAGGG AGGAGGGTCAATCCGAAAATGGTCGTCTGTACTGCCCAGTGACGAACGTT CGTGGTTCACGAGCCCCGAATGGCGGACGCTCTCCTGCCTCGCCTGCCGT TGCGCCCGTTGACCAAATCACTTGACCAGGGACACACGTCCTACGTGAAC ACGGCGGTGTACATGCTCGACGGAGGGAAGGTGGTCACCGGATCGGCCGA CGGAACGGTCAAGGTAAACAAATATTTTTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig6479:8631..10264+

>mRNA_H-elongata_contig6479.14069.1 ID=mRNA_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig6479:8631..10264+ (Himanthalia elongata Himel1 dioecious)
ATGCACGACGAGGCCGTCCTGAGCGGCACCTTCAGCAGAGACGGCGAGCA
CCTCGCCACCGGAAGCACGATGCACGACGAGGCCGTCCTGAGCGGCACCT
TCAGCAGAGACGGCGAGCACCTCGCCACCGGAAGCACGGATGGCAAGATA
AAGGTCTGGAAGATTTCGACGGGTCAATGCCTCAGGCGCTTCGAGATTGC
GCACACGCAGGGGGTCACCTCGCTAGCTTTCGCGAGGGACGGGTCGCAGC
TACTATCTGCCTCAATGGATCAGACGGCGCGTATTCACGGCCTCAAGTCT
GGGAAGATGCTTAAGGAATTCAGGGATGGCAAGATAAAGGTCTGGAAGAT
TTCGACGGGTCAATGCCTCAGGCGCTTCGAGATTGCGCACACGCAGGGGG
TCACCTCGCTAGCTTTCGCGAGGGACGGGTCGCAGCTACTATCTGCCTCA
ATGGATCAGACGGCGCGTATTCACGGCCTCAAGTCTGGGAAGATGCTTAA
GGAATTCAGGGGACACACGTCCTACGTGAACACGGCGGTGTACATGCTCG
ACGGAGGGAAGGTGGTCACCGGATCGGCCGACGGAACGGTCAAGGTAAAC
AAATATTTTTTTTAAGGACACACGTCCTACGTGAACACGGCGGTGTACAT
GCTCGACGGAGGGAAGGTGGTCACCGGATCGGCCGACGGAACGGTCAAGG
TAAACAAATATTTTTTTTAA
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