mRNA_H-elongata_contig6479.14069.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7J5XQP8_DISMA (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XQP8_DISMA) HSP 1 Score: 99.0 bits (245), Expect = 1.710e-22 Identity = 84/113 (74.34%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVK 339
M D+AVL FSRD E LATG+ DGKIKVWKI +GQCLRRFE AH++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTS+VN A + DG V++ S+DGTVK
Sbjct: 175 MMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSFVNEATFTPDGHHVISASSDGTVK 287
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A2C6KMV8_9APIC (WD40 repeat-containing protein SMU1 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KMV8_9APIC) HSP 1 Score: 95.5 bits (236), Expect = 1.320e-21 Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
MH+ AV++ FSRD E LATGS DG++KVW ++TGQC R+F+ AH XXXXXXXXXXXXXXXXXXXX KEFRGH ++VN A+Y+ D +VVTGSADG VKV
Sbjct: 2 MHETAVVAVEFSRDSEVLATGSQDGQLKVWLVATGQCARKFDRAHDXXXXXXXXXXXXXXXXXXXXXTTARIHGLKSGKTLKEFRGHLTFVNCALYLPDNTRVVTGSADGRVKV 115
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A067BYK7_SAPPC (WD40 repeat-containing protein SMU1 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BYK7_SAPPC) HSP 1 Score: 95.1 bits (235), Expect = 3.260e-21 Identity = 77/114 (67.54%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
MH+ V + FSRDG+ LAT S DGK+KVWK+STGQCLRRFE AH XXXXXXXXXXXXXXXXXXXXXXXXXXXX EF GH YVN AV+ D KV++ S DGT+KV
Sbjct: 35 MHEVGVSAEAFSRDGDLLATASVDGKVKVWKLSTGQCLRRFEHAHGNSIHSICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFHGHDGYVNHAVFSTDASKVISASCDGTLKV 148
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A0R3XAU4_HYDTA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3XAU4_HYDTA) HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20 Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 7 DEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
D AVL FSRD E LA+GS DGK+K+W+I +GQCLRRFE AHT+ KEF GHT +VN V+ DG V++GSADG+V++
Sbjct: 2 DTAVLCLAFSRDSELLASGSMDGKVKIWRIQSGQCLRRFEKAHTKGVTAAHFSMDNVQLLTASYDHTIRIHGMKSGNLLKEFVGHTGFVNDVVFSPDGRHVLSGSADGSVRI 113
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S2P5I5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5I5_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 6.320e-19 Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
+HD AVL+ FSRDGE LATGS+DG ++VWKI TG+CLR+FE AH+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RGHTSY+NT Y+ + K+ T +ADGTV++
Sbjct: 166 LHDTAVLAINFSRDGEMLATGSSDGMVRVWKIMTGKCLRQFEHAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHTSYINTCTYVNEM-KIATSAADGTVRI 278
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S2UR72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR72_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.270e-19 Identity = 63/132 (47.73%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGK------------------VVTGSADGTVKV 342
+H+ AVL+ T + DG L +GS DG IKVWKI+TG CLR+ + AH XXXXXXXXXXX KEFRGHTSYVNT Y LD G+ VVTGSADGTV+V
Sbjct: 120 LHETAVLALTVTADGTMLCSGSVDGTIKVWKIATGTCLRQMDRAHAGAISCVAFSPDXXXXXXXXXXXTCREFGLRASRMLKEFRGHTSYVNTCAYALDNGRNSNSXXXXXXXXXGPNLLVVTGSADGTVRV 251
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A7AQS6_BABBO (WD40 repeat-containing protein SMU1 n=1 Tax=Babesia bovis TaxID=5865 RepID=A7AQS6_BABBO) HSP 1 Score: 90.1 bits (222), Expect = 1.240e-18 Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
+HD ++S SRD E LA+G DG IK+WKI+TG+C+R+ + AH KEF+GH S VN A+Y DG KV+TGS+DG +KV
Sbjct: 273 LHDTLIVSLAVSRDSEILASGDKDGNIKIWKIATGECMRKMDNAHDGAVTCMTFSRNSMSLLTGSFDKTAKIHGLKSGRSIKEFKGHHSIVNAAIYSYDGNKVITGSSDGYIKV 386
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A7S0WFI9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WFI9_9CRYP) HSP 1 Score: 88.2 bits (217), Expect = 2.380e-18 Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
MH++AVLS +S+D E +ATG GKIK+WK+ TGQC+R+FE AH Q KE RGH+SY+N Y DG ++ + +DG VKV
Sbjct: 156 MHEDAVLSLAWSKDSEIVATGDQAGKIKIWKVRTGQCVRKFERAHVQGVTCLAFSRDSTQLCSASYDASMRMHGLKSGKTLKEMRGHSSYINHCSYTADGLRICSSGSDGWVKV 269
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A812D2T2_SEPPH (SMU1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D2T2_SEPPH) HSP 1 Score: 87.0 bits (214), Expect = 1.390e-17 Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKVNKYFF 357
M D+AVL FSRD E LATGS DGKIKVWK+ TGQCLR+FE AH + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FRGH+S+VN AV+ DG +++ S+ N++FF
Sbjct: 225 MMDDAVLCMCFSRDSEMLATGSQDGKIKVWKLLTGQCLRKFERAHAKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGHSSFVNDAVFTQDGHHIISASS------NRHFF 337
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Match: A0A6P6RSL7_9EIME (FACT complex subunit n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RSL7_9EIME) HSP 1 Score: 86.3 bits (212), Expect = 3.160e-17 Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 1 MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTAVYMLDGGKVVTGSADGTVKV 342
MH+ AV++ FSRD E LATGS G++KVW ++TGQC+++ + A XXXXXXXXXXXXXXXXXX KEFRGH ++VN A+Y+ D +++TGSADG VK+
Sbjct: 111 MHETAVVAIAFSRDSEALATGSQTGQLKVWLVATGQCIKKIDKAXXXXXXXXXXXXXXXXXXXXXFDTTARIHGLKAGKTLKEFRGHLTFVNCAIYLPDNSRILTGSADGKVKL 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6479.14069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6479.14069.1 >prot_H-elongata_contig6479.14069.1 ID=prot_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MHDEAVLSGTFSRDGEHLATGSTDGKIKVWKISTGQCLRRFEIAHTQGVTback to top mRNA from alignment at H-elongata_contig6479:8631..10264+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6479.14069.1 ID=mRNA_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1634bp|location=Sequence derived from alignment at H-elongata_contig6479:8631..10264+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6479:8631..10264+ >mRNA_H-elongata_contig6479.14069.1 ID=mRNA_H-elongata_contig6479.14069.1|Name=mRNA_H-elongata_contig6479.14069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig6479:8631..10264+ (Himanthalia elongata Himel1 dioecious)back to top |