mRNA_H-elongata_contig64751.14066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64751.14066.1
Unique NamemRNA_H-elongata_contig64751.14066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.160e-52
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
            VKKMVRRGDHEGAARMLLRVAR+ISRFP H+VP+LTS VIECQR+GLRNSAFE ASTLMRQ  E RGQIDKKYRRNIE IVRRPNRDEEPEP SKCPIS AEVPITQLEC S
Sbjct:  639 VKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ--EYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPS 748          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.480e-52
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
            VKKMVRRGDHEGAARMLLRVAR+ISRFP H+VP+LTS VIECQR+GLRNSAFE ASTLMRQ  E RGQIDKKYRRNIE IVRRPNRDEEPEP SKCPIS AEVPITQLEC S
Sbjct: 1260 VKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ--EYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPS 1369          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A7S2V6K7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.950e-37
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEE-PEPISKCPISGAEVPITQLEC 330
            VKKMV+RGDH  A+RMLLRVA++IS+FP H+VPILTS VI CQRAGL+ SAFE  S LMR   E R Q+D K++R IE IVRRPNR EE  E ++KCPISG  +P+TQLEC
Sbjct:   13 VKKMVKRGDHMSASRMLLRVAKSISKFPSHMVPILTSTVITCQRAGLKPSAFEYGSMLMR--PEFRQQMDPKFKRKIEQIVRRPNRGEEMAEDMTKCPISGIPIPMTQLEC 121          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.210e-36
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    4 KKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEE-PEPISKCPISGAEVPITQLECSS 336
            K++ RRG+HEGAARMLLRVAR+ SRFP H V +LTS VIECQRAGLR SAFE AS LMR   E+RGQIDKKYRR+IE IVRRP+R+ E PE  + CPI+GA +  T LEC++
Sbjct: 1312 KRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMR--PEHRGQIDKKYRRSIEAIVRRPSREPEAPEVCTPCPITGAPLAATALECAA 1421          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 133 bits (335), Expect = 5.890e-34
Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
            VKK+++ GDH+ AARMLLRVA++IS+FP H  PILTS VIECQRAGL+ SA E A+ LMR   E RG+ID K++R IE ++RRPN +EEPE +S CPISG  +P T+LEC
Sbjct: 1206 VKKLIKAGDHDAAARMLLRVAKSISKFPSHGAPILTSTVIECQRAGLKASAHEYATQLMR--PELRGKIDPKFKRKIEQMIRRPNLEEEPELLSPCPISGVMIPRTELEC 1313          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.180e-33
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
            VKK + R DH GAAR+LLRVA++IS+FP H+V ILTS VIE  RAGL+ SA E A+ LMRQ  E R Q+D K++R IE +VRRPNR+E PEP+S+CP+SG  +P++ LEC
Sbjct:  283 VKKRIARDDHAGAARLLLRVAKSISKFPAHMVIILTSTVIESARAGLKKSALEYATVLMRQ--EYRAQVDSKFKRKIEGLVRRPNREELPEPVSECPVSGILIPVSCLEC 390          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A388JTS2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTS2_CHABU)

HSP 1 Score: 128 bits (322), Expect = 3.250e-32
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
            VK +V+ GDHE +ARML+RVARNIS+FP H+VPILTS VIECQR+GL+N+AF+ AS LMR  SE R  I   Y+R IE IVR+P++ E  +P+S CP     +P TQLEC S
Sbjct:  675 VKTLVKLGDHESSARMLIRVARNISKFPAHIVPILTSTVIECQRSGLKNTAFQYASMLMR--SEYRSSIAPAYKRKIENIVRKPDKSEAEDPLSPCPFCEMLIPETQLECPS 784          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: UPI001EB09D72 (WD repeat-containing protein 19-like isoform X1 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EB09D72)

HSP 1 Score: 126 bits (317), Expect = 1.580e-31
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   13 VRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
            ++RGDH   ARML+RVA NIS+FP H+VP+LTS VIECQR+GL+NSAF  A+ LMR   E R QID KY++ IE IVR+P++ EE EP+S CP+ G ++P T+L C
Sbjct: 1224 IKRGDHLKGARMLIRVANNISKFPSHIVPLLTSTVIECQRSGLKNSAFSYAAMLMR--PEYRNQIDLKYKKKIEMIVRKPDKTEEDEPLSPCPVCGFQLPETELMC 1327          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A423U4K0_PENVA (Putative WD repeat-containing protein 19-like n=5 Tax=Penaeus TaxID=133894 RepID=A0A423U4K0_PENVA)

HSP 1 Score: 126 bits (316), Expect = 2.150e-31
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   13 VRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
            VRRGDH  AARML+RVA +IS+FP H+VPILTS VIECQR+GL+NS+F  A+ LMR   E RGQID+KY++ IE IVR+P R EE EP S CP   + V  T LEC
Sbjct: 1168 VRRGDHLKAARMLIRVANHISKFPAHMVPILTSTVIECQRSGLKNSSFNFAAMLMR--PETRGQIDEKYKKKIEAIVRKPQRSEEDEPSSPCPYCSSPVEETVLEC 1271          
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A2C9JSM6_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JSM6_BIOGL)

HSP 1 Score: 126 bits (316), Expect = 2.150e-31
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECS 333
            VK  V+RGDH   ARML+RVA NIS+FP HVVPILTS VIEC RAGL+NS+F  A+ LMR   E R  ID KY+R IE IVR+P++ EE EP++ CP  G ++P T+L CS
Sbjct: 1168 VKIHVKRGDHMKGARMLIRVANNISKFPSHVVPILTSTVIECHRAGLKNSSFSYAAMLMR--PEYRNDIDLKYKRKIEMIVRKPDKTEEEEPLTPCPFCGFQIPETELLCS 1276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE11_9PHAE1.160e-5287.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIK0_ECTSI1.480e-5287.50WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A7S2V6K7_9STRA3.950e-3766.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZAW6_9STRA2.210e-3667.86WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
F0YFC0_AURAN5.890e-3462.73Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2AWF5_9STRA3.180e-3360.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A388JTS2_CHABU3.250e-3259.82Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI001EB09D721.580e-3159.43WD repeat-containing protein 19-like isoform X1 n=... [more]
A0A423U4K0_PENVA2.150e-3163.21Putative WD repeat-containing protein 19-like n=5 ... [more]
A0A2C9JSM6_BIOGL2.150e-3160.36Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64751contigH-elongata_contig64751:1163..1664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue7e-45
Seed eggNOG ortholog2880.D7FIK0
Preferred nameFAP66
KEGG koko:K19671
EggNOG free text desc.myotome development
EggNOG OGsKOG2247@1,KOG2247@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64751.14066.1prot_H-elongata_contig64751.14066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64751 1172..1664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.4246645-UTR-H-elongata_contig64751:1162..11711622931033.4246645-UTR-H-elongata_contig64751:1162..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64751 1163..1171 +
1691679670.2050755-UTR-H-elongata_contig64751:1162..11711691679670.2050755-UTR-H-elongata_contig64751:1162..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64751 1163..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.4364579-CDS-H-elongata_contig64751:1171..13511622931033.4364579-CDS-H-elongata_contig64751:1171..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64751 1172..1351 +
1691679670.221622-CDS-H-elongata_contig64751:1171..13511691679670.221622-CDS-H-elongata_contig64751:1171..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64751 1172..1351 +
1622931033.4545882-CDS-H-elongata_contig64751:1517..16641622931033.4545882-CDS-H-elongata_contig64751:1517..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64751 1518..1664 +
1691679670.2365787-CDS-H-elongata_contig64751:1517..16641691679670.2365787-CDS-H-elongata_contig64751:1517..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64751 1518..1664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64751.14066.1

>prot_H-elongata_contig64751.14066.1 ID=prot_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFE
CASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEV
PITQLECSS
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mRNA from alignment at H-elongata_contig64751:1163..1664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64751.14066.1 ID=mRNA_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at H-elongata_contig64751:1163..1664+ (Himanthalia elongata Himel1 dioecious)
GTGAAAAAGATGGTTCGTCGTGGGGACCACGAAGGCGCCGCTCGGATGCT GCTAAGGGTGGCCCGCAACATATCTCGTTTTCCTATGCATGTTGTCCCGA TTCTGACGTCCGCCGTCATCGAGTGTCAGCGAGCAGGGCTTCGAAACTCA GCCTTCGAGTGCGCTTCGACACTTATGCGCCAGGCAAGCGTGTTTCGTCG ACCACCGTGTTTGACATTCCCAGGTGTTGGATCGCCGCTCTTTAGAGGAT GTCGGGGTCCACAAGCACACCTGCCCAGCACAAACATTTAATTGAATCGC TATCGACTTTCACCATCCGACCCCTTTCTTCACTCGCGTCCACGGCCCCG CGCAGGAAAATCGAGGGCAGATTGATAAAAAATATCGCCGCAATATCGAG ACGATCGTTCGCCGCCCCAATCGTGACGAGGAGCCAGAGCCGATCTCCAA GTGTCCAATCAGCGGGGCAGAGGTGCCAATCACCCAGTTGGAGTGCTCAT CA
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Coding sequence (CDS) from alignment at H-elongata_contig64751:1163..1664+

>mRNA_H-elongata_contig64751.14066.1 ID=mRNA_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig64751:1163..1664+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCGTCGTGGGGACCACGAAGGCGCCGCTCGGATGCTGCTAAGGGT
GGCCCGCAACATATCTCGTTTTCCTATGCATGTTGTCCCGATTCTGACGT
CCGCCGTCATCGAGTGTCAGCGAGCAGGGCTTCGAAACTCAGCCTTCGAG
TGCGCTTCGACACTTATGCGCCAGGCAAGCATGGTTCGTCGTGGGGACCA
CGAAGGCGCCGCTCGGATGCTGCTAAGGGTGGCCCGCAACATATCTCGTT
TTCCTATGCATGTTGTCCCGATTCTGACGTCCGCCGTCATCGAGTGTCAG
CGAGCAGGGCTTCGAAACTCAGCCTTCGAGTGCGCTTCGACACTTATGCG
CCAGGCAAGCGAAAATCGAGGGCAGATTGATAAAAAATATCGCCGCAATA
TCGAGACGATCGTTCGCCGCCCCAATCGTGACGAGGAGCCAGAGCCGATC
TCCAAGTGTCCAATCAGCGGGGCAGAGGTGCCAATCACCCAGTTGGAGTG
CTCATCAGAAAATCGAGGGCAGATTGATAAAAAATATCGCCGCAATATCG
AGACGATCGTTCGCCGCCCCAATCGTGACGAGGAGCCAGAGCCGATCTCC
AAGTGTCCAATCAGCGGGGCAGAGGTGCCAATCACCCAGTTGGAGTGCTC
ATCA
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