mRNA_H-elongata_contig64751.14066.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.160e-52 Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
VKKMVRRGDHEGAARMLLRVAR+ISRFP H+VP+LTS VIECQR+GLRNSAFE ASTLMRQ E RGQIDKKYRRNIE IVRRPNRDEEPEP SKCPIS AEVPITQLEC S
Sbjct: 639 VKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ--EYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPS 748
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.480e-52 Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
VKKMVRRGDHEGAARMLLRVAR+ISRFP H+VP+LTS VIECQR+GLRNSAFE ASTLMRQ E RGQIDKKYRRNIE IVRRPNRDEEPEP SKCPIS AEVPITQLEC S
Sbjct: 1260 VKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ--EYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPS 1369
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A7S2V6K7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K7_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.950e-37 Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEE-PEPISKCPISGAEVPITQLEC 330
VKKMV+RGDH A+RMLLRVA++IS+FP H+VPILTS VI CQRAGL+ SAFE S LMR E R Q+D K++R IE IVRRPNR EE E ++KCPISG +P+TQLEC
Sbjct: 13 VKKMVKRGDHMSASRMLLRVAKSISKFPSHMVPILTSTVITCQRAGLKPSAFEYGSMLMR--PEFRQQMDPKFKRKIEQIVRRPNRGEEMAEDMTKCPISGIPIPMTQLEC 121
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.210e-36 Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1
Query: 4 KKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEE-PEPISKCPISGAEVPITQLECSS 336
K++ RRG+HEGAARMLLRVAR+ SRFP H V +LTS VIECQRAGLR SAFE AS LMR E+RGQIDKKYRR+IE IVRRP+R+ E PE + CPI+GA + T LEC++
Sbjct: 1312 KRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMR--PEHRGQIDKKYRRSIEAIVRRPSREPEAPEVCTPCPITGAPLAATALECAA 1421
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN) HSP 1 Score: 133 bits (335), Expect = 5.890e-34 Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
VKK+++ GDH+ AARMLLRVA++IS+FP H PILTS VIECQRAGL+ SA E A+ LMR E RG+ID K++R IE ++RRPN +EEPE +S CPISG +P T+LEC
Sbjct: 1206 VKKLIKAGDHDAAARMLLRVAKSISKFPSHGAPILTSTVIECQRAGLKASAHEYATQLMR--PELRGKIDPKFKRKIEQMIRRPNLEEEPELLSPCPISGVMIPRTELEC 1313
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.180e-33 Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
VKK + R DH GAAR+LLRVA++IS+FP H+V ILTS VIE RAGL+ SA E A+ LMRQ E R Q+D K++R IE +VRRPNR+E PEP+S+CP+SG +P++ LEC
Sbjct: 283 VKKRIARDDHAGAARLLLRVAKSISKFPAHMVIILTSTVIESARAGLKKSALEYATVLMRQ--EYRAQVDSKFKRKIEGLVRRPNREELPEPVSECPVSGILIPVSCLEC 390
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A388JTS2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTS2_CHABU) HSP 1 Score: 128 bits (322), Expect = 3.250e-32 Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECSS 336
VK +V+ GDHE +ARML+RVARNIS+FP H+VPILTS VIECQR+GL+N+AF+ AS LMR SE R I Y+R IE IVR+P++ E +P+S CP +P TQLEC S
Sbjct: 675 VKTLVKLGDHESSARMLIRVARNISKFPAHIVPILTSTVIECQRSGLKNTAFQYASMLMR--SEYRSSIAPAYKRKIENIVRKPDKSEAEDPLSPCPFCEMLIPETQLECPS 784
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: UPI001EB09D72 (WD repeat-containing protein 19-like isoform X1 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EB09D72) HSP 1 Score: 126 bits (317), Expect = 1.580e-31 Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 13 VRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
++RGDH ARML+RVA NIS+FP H+VP+LTS VIECQR+GL+NSAF A+ LMR E R QID KY++ IE IVR+P++ EE EP+S CP+ G ++P T+L C
Sbjct: 1224 IKRGDHLKGARMLIRVANNISKFPSHIVPLLTSTVIECQRSGLKNSAFSYAAMLMR--PEYRNQIDLKYKKKIEMIVRKPDKTEEDEPLSPCPVCGFQLPETELMC 1327
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A423U4K0_PENVA (Putative WD repeat-containing protein 19-like n=5 Tax=Penaeus TaxID=133894 RepID=A0A423U4K0_PENVA) HSP 1 Score: 126 bits (316), Expect = 2.150e-31 Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 13 VRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLEC 330
VRRGDH AARML+RVA +IS+FP H+VPILTS VIECQR+GL+NS+F A+ LMR E RGQID+KY++ IE IVR+P R EE EP S CP + V T LEC
Sbjct: 1168 VRRGDHLKAARMLIRVANHISKFPAHMVPILTSTVIECQRSGLKNSSFNFAAMLMR--PETRGQIDEKYKKKIEAIVRKPQRSEEDEPSSPCPYCSSPVEETVLEC 1271
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Match: A0A2C9JSM6_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JSM6_BIOGL) HSP 1 Score: 126 bits (316), Expect = 2.150e-31 Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 VKKMVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFECASTLMRQASENRGQIDKKYRRNIETIVRRPNRDEEPEPISKCPISGAEVPITQLECS 333
VK V+RGDH ARML+RVA NIS+FP HVVPILTS VIEC RAGL+NS+F A+ LMR E R ID KY+R IE IVR+P++ EE EP++ CP G ++P T+L CS
Sbjct: 1168 VKIHVKRGDHMKGARMLIRVANNISKFPSHVVPILTSTVIECHRAGLKNSSFSYAAMLMR--PEYRNDIDLKYKRKIEMIVRKPDKTEEEEPLTPCPFCGFQIPETELLCS 1276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64751.14066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64751.14066.1 >prot_H-elongata_contig64751.14066.1 ID=prot_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MVRRGDHEGAARMLLRVARNISRFPMHVVPILTSAVIECQRAGLRNSAFEback to top mRNA from alignment at H-elongata_contig64751:1163..1664+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64751.14066.1 ID=mRNA_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at H-elongata_contig64751:1163..1664+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64751:1163..1664+ >mRNA_H-elongata_contig64751.14066.1 ID=mRNA_H-elongata_contig64751.14066.1|Name=mRNA_H-elongata_contig64751.14066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig64751:1163..1664+ (Himanthalia elongata Himel1 dioecious)back to top |