mRNA_H-elongata_contig64604.14054.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.460e-48 Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
K DE G I+K K+ +VA+ Q++GV YLE F+PT +S++ VV +A + + E + D+ +A +Q+ + +V++KLP GCD MSG IV L +LYGL+Q+ R R + ++G EQ DPC R D E I+ +HVD I A K + + + L + T LG++ +FL AF RDRE GT + Q ++I S++ RF++ TS+IPA D EDE + P+++V GCL+WIA
Sbjct: 472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 719
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.720e-48 Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
K DE G I+K K+ +VA+ Q++GV YLE F+PT +S++ VV +A + + E + D+ +A +Q+ + +V++KLP GCD MSG IV L +LYGL+Q+ R R + ++G EQ DPC R D E I+ +HVD I A K + + + L + T LG++ +FL AF RDRE GT + Q ++I S++ RF++ TS+IPA D EDE + P+++V GCL+WIA
Sbjct: 536 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 783
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.750e-48 Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
K DE G I+K K+ +VA+ Q++GV YLE F+PT +S++ VV +A + + E + D+ +A +Q+ + +V++KLP GCD MSG IV L +LYGL+Q+ R R + ++G EQ DPC R D E I+ +HVD I A K + + + L + T LG++ +FL AF RDRE GT + Q ++I S++ RF++ TS+IPA D EDE + P+++V GCL+WIA
Sbjct: 680 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 927
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 180 bits (457), Expect = 3.980e-48 Identity = 94/251 (37.45%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
K DE G I+K K+ +VA+ Q+YGV YLE F+PT +S++ +V +A + D E ++D+ +A +Q+ + +V++KLP GC MSG +V L +LYGL+Q+ R R ++++G EQ DPC R D ++ +HVD I A K++ + L + T LG++ +FL AF+RDRE GT + Q ++I S++ RF + TS+IPA D EDE + P+++V GCL+W+A
Sbjct: 834 KADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSD-LKRIGFEQSLSDPCVLRFMMGDEVLGMVA-IHVDDILYAGT-KSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVA 1081
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 178 bits (452), Expect = 4.050e-48 Identity = 98/251 (39.04%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
K DE G I+K K+ +VA+ Q++GV YLE F+PT +S++ VV +A + + E + D+ +A Q+ + +V +KLP GCD MSG IV L +LYGL+Q+ R R + ++G EQ DPC R D E I+ +HVD I A K + + + L + T LG++ +FL AF RDRE GT + Q ++I S++ RF++ TS+IPA D EDE + P+++V GCL+WIA
Sbjct: 267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 514
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 177 bits (450), Expect = 4.620e-48 Identity = 94/251 (37.45%), Postives = 149/251 (59.36%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
+ G I+K K+ +VA+ Q++GV YLE F+PT +S++ +V +A + D E+ +FD+ +A +Q++ + +V++KLP GC+ M+G +V L +LYGLRQ+ R + R ++++G EQ DPC D +I +HVD I A I+ + + + L + T LG++ +FL AF RDRE GT M Q ++I S++ RF+V TS+IPA T D EDE + P++ V G L+WIA
Sbjct: 203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSD-LKRIGFEQSLSDPCVLHFMMGDEVLGMIA-IHVDDILYAG-IERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIA 450
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE) HSP 1 Score: 167 bits (423), Expect = 5.930e-47 Identity = 91/249 (36.55%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
KT+E+ ++ FK+ MVAR SQ + + + P +S+K V+ VA E + ++DV +A I A + +Y++ P+GC MSG +V ++ ALYGL+QSG +E G EQC+VDPC FR D E ++ ++VD I +AA + + F L ++F +LG+ W+ YA D E + Q +I SI++RF V TT+ PA DLGPKR+DE ++P ++ GCL+W
Sbjct: 33 KTNENDLMVDFKARMVARGFSQIPSIDFHHSSSACPSAASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDILVAAD-EGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKRFDVTTTAFTPAAADADLGPKRDDEPAVDKPVREAIGCLMW 278
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 174 bits (442), Expect = 7.950e-47 Identity = 94/249 (37.75%), Postives = 143/249 (57.43%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
KT+E G I+ FK+ MVAR SQ G+ + + P +S+K V+ VA E + ++DV +A I A + ++Y++ P+GC MSG +V ++ ALYGL+QSGR +E G EQC+VDPC FR D E ++ ++VD I +AA + F L ++F ++G+ W+ A D E G + Q +I S+++RF V TT+ PA T DLGPKR+DE ++P ++ GCL+W
Sbjct: 267 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDIIVAADEGEREELF-ASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 512
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.220e-46 Identity = 95/249 (38.15%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
KT+ G I+ FK+ MVAR SQ G+ + + P +S+K V+ VA E + ++DV +A I A + ++Y++LP+GC MSG +V ++ ALYGL+QSGR +E G EQC+VDPC FR D E ++ ++VD I +AA + F L ++F +G+ WF A D E G + Q +I S+++RF V TT+ PA T DLGPKR+DE ++P ++ GCL+W
Sbjct: 337 KTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIEN-GCEQCRVDPCVFRK-VVDGEVVGLIVIYVDEILVAADEGEREELF-ASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIW 582
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 174 bits (441), Expect = 4.550e-46 Identity = 94/249 (37.75%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
KT+E G I+ FK+ MVAR SQ G+ + + P +S+K V+ VA E + ++DV +A I A + ++Y++ P+GC MSG +V ++ ALYGL+Q GR +E G EQC+VDPC FR D E ++ ++VD I +AA + F L ++F +LG+ W+ A D E G + Q +I S+++RF V TT+ PA T DLGPKR+DE ++P ++ GCL+W
Sbjct: 554 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 799 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64604.14054.1 >prot_H-elongata_contig64604.14054.1 ID=prot_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIEback to top mRNA from alignment at H-elongata_contig64604:2670..3422- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64604.14054.1 ID=mRNA_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig64604:2670..3422- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64604:2670..3422- >mRNA_H-elongata_contig64604.14054.1 ID=mRNA_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig64604:2670..3422- (Himanthalia elongata Himel1 dioecious)back to top |