mRNA_H-elongata_contig64604.14054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64604.14054.1
Unique NamemRNA_H-elongata_contig64604.14054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.460e-48
Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            K DE G I+K K+ +VA+   Q++GV YLE F+PT   +S++ VV +A + + E  + D+ +A +Q+  + +V++KLP GCD MSG IV L  +LYGL+Q+ R    R     + ++G EQ   DPC  R    D E   I+ +HVD I  A   K + +  +  L +   T  LG++ +FL  AF RDRE GT  + Q ++I S++ RF++  TS+IPA    D     EDE   + P+++V GCL+WIA
Sbjct:  472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 719          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.720e-48
Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            K DE G I+K K+ +VA+   Q++GV YLE F+PT   +S++ VV +A + + E  + D+ +A +Q+  + +V++KLP GCD MSG IV L  +LYGL+Q+ R    R     + ++G EQ   DPC  R    D E   I+ +HVD I  A   K + +  +  L +   T  LG++ +FL  AF RDRE GT  + Q ++I S++ RF++  TS+IPA    D     EDE   + P+++V GCL+WIA
Sbjct:  536 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 783          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.750e-48
Identity = 98/251 (39.04%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            K DE G I+K K+ +VA+   Q++GV YLE F+PT   +S++ VV +A + + E  + D+ +A +Q+  + +V++KLP GCD MSG IV L  +LYGL+Q+ R    R     + ++G EQ   DPC  R    D E   I+ +HVD I  A   K + +  +  L +   T  LG++ +FL  AF RDRE GT  + Q ++I S++ RF++  TS+IPA    D     EDE   + P+++V GCL+WIA
Sbjct:  680 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 927          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.980e-48
Identity = 94/251 (37.45%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            K DE G I+K K+ +VA+   Q+YGV YLE F+PT   +S++ +V +A + D E  ++D+ +A +Q+  + +V++KLP GC  MSG +V L  +LYGL+Q+ R    R     ++++G EQ   DPC  R    D    ++  +HVD I  A   K++    +  L +   T  LG++ +FL  AF+RDRE GT  + Q ++I S++ RF +  TS+IPA    D     EDE   + P+++V GCL+W+A
Sbjct:  834 KADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSD-LKRIGFEQSLSDPCVLRFMMGDEVLGMVA-IHVDDILYAGT-KSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVA 1081          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.050e-48
Identity = 98/251 (39.04%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            K DE G I+K K+ +VA+   Q++GV YLE F+PT   +S++ VV +A + + E  + D+ +A  Q+  + +V +KLP GCD MSG IV L  +LYGL+Q+ R    R     + ++G EQ   DPC  R    D E   I+ +HVD I  A   K + +  +  L +   T  LG++ +FL  AF RDRE GT  + Q ++I S++ RF++  TS+IPA    D     EDE   + P+++V GCL+WIA
Sbjct:  267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGD-EVMGIIAIHVDDILYAGT-KRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIA 514          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.620e-48
Identity = 94/251 (37.45%), Postives = 149/251 (59.36%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWIA 753
            +    G I+K K+ +VA+   Q++GV YLE F+PT   +S++ +V +A + D E+ +FD+ +A +Q++ + +V++KLP GC+ M+G +V L  +LYGLRQ+ R  + R     ++++G EQ   DPC       D    +I  +HVD I  A  I+ + +  +  L +   T  LG++ +FL  AF RDRE GT  M Q ++I S++ RF+V  TS+IPA  T D     EDE   + P++ V G L+WIA
Sbjct:  203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSD-LKRIGFEQSLSDPCVLHFMMGDEVLGMIA-IHVDDILYAG-IERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIA 450          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.930e-47
Identity = 91/249 (36.55%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
            KT+E+  ++ FK+ MVAR  SQ   + +    +  P  +S+K V+ VA E   +  ++DV +A I A  +  +Y++ P+GC  MSG +V ++ ALYGL+QSG           +E  G EQC+VDPC FR    D E   ++ ++VD I +AA  +   + F   L ++F   +LG+  W+  YA   D E     + Q  +I SI++RF V TT+  PA    DLGPKR+DE   ++P ++  GCL+W
Sbjct:   33 KTNENDLMVDFKARMVARGFSQIPSIDFHHSSSACPSAASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDILVAAD-EGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKRFDVTTTAFTPAAADADLGPKRDDEPAVDKPVREAIGCLMW 278          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 7.950e-47
Identity = 94/249 (37.75%), Postives = 143/249 (57.43%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
            KT+E G I+ FK+ MVAR  SQ  G+ +    +  P  +S+K V+ VA E   +  ++DV +A I A  + ++Y++ P+GC  MSG +V ++ ALYGL+QSGR          +E  G EQC+VDPC FR    D E   ++ ++VD I +AA      + F   L ++F   ++G+  W+   A   D E G   + Q  +I S+++RF V TT+  PA T  DLGPKR+DE   ++P ++  GCL+W
Sbjct:  267 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDIIVAADEGEREELF-ASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 512          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.220e-46
Identity = 95/249 (38.15%), Postives = 142/249 (57.03%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
            KT+  G I+ FK+ MVAR  SQ  G+ +    +  P  +S+K V+ VA E   +  ++DV +A I A  + ++Y++LP+GC  MSG +V ++ ALYGL+QSGR          +E  G EQC+VDPC FR    D E   ++ ++VD I +AA      + F   L ++F    +G+  WF   A   D E G   + Q  +I S+++RF V TT+  PA T  DLGPKR+DE   ++P ++  GCL+W
Sbjct:  337 KTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIEN-GCEQCRVDPCVFRK-VVDGEVVGLIVIYVDEILVAADEGEREELF-ASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIW 582          
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 4.550e-46
Identity = 94/249 (37.75%), Postives = 142/249 (57.03%), Query Frame = 1
Query:    1 KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIENDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQSGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGITIAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQPTFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLW 747
            KT+E G I+ FK+ MVAR  SQ  G+ +    +  P  +S+K V+ VA E   +  ++DV +A I A  + ++Y++ P+GC  MSG +V ++ ALYGL+Q GR          +E  G EQC+VDPC FR    D E   ++ ++VD I +AA      + F   L ++F   +LG+  W+   A   D E G   + Q  +I S+++RF V TT+  PA T  DLGPKR+DE   ++P ++  GCL+W
Sbjct:  554 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIEN-GYEQCRVDPCVFRK-VVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 799          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64604.14054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDZ0_9PHAE1.460e-4839.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.720e-4839.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.750e-4839.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB16_9PHAE3.980e-4837.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV80_9PHAE4.050e-4839.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE4.620e-4837.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMA7_9PHAE5.930e-4736.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE7.950e-4737.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.220e-4638.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE4.550e-4637.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64604contigH-elongata_contig64604:2670..3422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score125.6
Seed ortholog evalue3.4e-26
Seed eggNOG ortholog7029.ACYPI065657-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BS5J@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.3569722-CDS-H-elongata_contig64604:2669..34221622931032.3569722-CDS-H-elongata_contig64604:2669..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64604 2670..3422 -
1691679669.6988301-CDS-H-elongata_contig64604:2669..34221691679669.6988301-CDS-H-elongata_contig64604:2669..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64604 2670..3422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64604.14054.1prot_H-elongata_contig64604.14054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64604 2670..3422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64604.14054.1

>prot_H-elongata_contig64604.14054.1 ID=prot_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
KTDEHGNILKFKSCMVARECSQEYGVVYLEVFAPTPLTSSVKRVVGVAIE
NDWEWRYFDVVKALIQADFEFDVYIKLPQGCDDMSGIIVLLQSALYGLRQ
SGRRCNLRFTKTFVEKLGMEQCKVDPCAFRLFAADNEASLIVFVHVDGIT
IAAKIKAMCDCFIVQLIEEFKTNELGDLYWFLSYAFVRDREKGTHFMPQP
TFINSIIRRFSVGTTSNIPAFTTYDLGPKREDEVQCNQPYKQVAGCLLWI
A
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mRNA from alignment at H-elongata_contig64604:2670..3422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64604.14054.1 ID=mRNA_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig64604:2670..3422- (Himanthalia elongata Himel1 dioecious)
AAAACGGATGAACATGGAAATATTCTCAAATTCAAGTCGTGTATGGTCGC AAGAGAATGTAGTCAGGAATACGGCGTCGTCTACTTGGAAGTCTTTGCAC CAACACCGTTGACGTCGAGTGTGAAACGTGTTGTTGGAGTAGCAATAGAG AATGATTGGGAGTGGCGATATTTTGATGTAGTAAAGGCTTTGATTCAGGC GGATTTTGAATTTGACGTTTACATAAAGTTGCCTCAAGGCTGTGATGATA TGAGTGGTATTATAGTATTGCTTCAATCAGCTTTGTATGGGCTCCGCCAG TCTGGCCGCAGATGTAATCTCCGGTTTACAAAGACGTTTGTCGAGAAACT CGGCATGGAACAATGCAAGGTAGATCCATGTGCTTTTAGGCTGTTTGCTG CAGATAATGAGGCGAGTTTGATTGTTTTTGTGCATGTTGATGGTATCACT ATTGCGGCTAAAATCAAGGCTATGTGCGACTGTTTCATTGTGCAACTTAT TGAGGAGTTCAAAACCAACGAATTGGGCGACCTCTATTGGTTCTTGAGCT ATGCATTCGTGCGTGACCGGGAGAAGGGAACCCATTTTATGCCCCAACCA ACGTTCATTAACTCAATTATACGTCGGTTTAGTGTTGGGACCACGTCCAA CATCCCGGCGTTCACTACGTACGATTTAGGACCCAAACGGGAGGATGAGG TGCAGTGCAATCAACCGTACAAGCAGGTGGCAGGGTGTCTTCTTTGGATA GCC
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Coding sequence (CDS) from alignment at H-elongata_contig64604:2670..3422-

>mRNA_H-elongata_contig64604.14054.1 ID=mRNA_H-elongata_contig64604.14054.1|Name=mRNA_H-elongata_contig64604.14054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig64604:2670..3422- (Himanthalia elongata Himel1 dioecious)
AAAACGGATGAACATGGAAATATTCTCAAATTCAAGTCGTGTATGGTCGC
AAGAGAATGTAGTCAGGAATACGGCGTCGTCTACTTGGAAGTCTTTGCAC
CAACACCGTTGACGTCGAGTGTGAAACGTGTTGTTGGAGTAGCAATAGAG
AATGATTGGGAGTGGCGATATTTTGATGTAGTAAAGGCTTTGATTCAGGC
GGATTTTGAATTTGACGTTTACATAAAGTTGCCTCAAGGCTGTGATGATA
TGAGTGGTATTATAGTATTGCTTCAATCAGCTTTGTATGGGCTCCGCCAG
TCTGGCCGCAGATGTAATCTCCGGTTTACAAAGACGTTTGTCGAGAAACT
CGGCATGGAACAATGCAAGGTAGATCCATGTGCTTTTAGGCTGTTTGCTG
CAGATAATGAGGCGAGTTTGATTGTTTTTGTGCATGTTGATGGTATCACT
ATTGCGGCTAAAATCAAGGCTATGTGCGACTGTTTCATTGTGCAACTTAT
TGAGGAGTTCAAAACCAACGAATTGGGCGACCTCTATTGGTTCTTGAGCT
ATGCATTCGTGCGTGACCGGGAGAAGGGAACCCATTTTATGCCCCAACCA
ACGTTCATTAACTCAATTATACGTCGGTTTAGTGTTGGGACCACGTCCAA
CATCCCGGCGTTCACTACGTACGATTTAGGACCCAAACGGGAGGATGAGG
TGCAGTGCAATCAACCGTACAAGCAGGTGGCAGGGTGTCTTCTTTGGATA
GCCAAAACGGATGAACATGGAAATATTCTCAAATTCAAGTCGTGTATGGT
CGCAAGAGAATGTAGTCAGGAATACGGCGTCGTCTACTTGGAAGTCTTTG
CACCAACACCGTTGACGTCGAGTGTGAAACGTGTTGTTGGAGTAGCAATA
GAGAATGATTGGGAGTGGCGATATTTTGATGTAGTAAAGGCTTTGATTCA
GGCGGATTTTGAATTTGACGTTTACATAAAGTTGCCTCAAGGCTGTGATG
ATATGAGTGGTATTATAGTATTGCTTCAATCAGCTTTGTATGGGCTCCGC
CAGTCTGGCCGCAGATGTAATCTCCGGTTTACAAAGACGTTTGTCGAGAA
ACTCGGCATGGAACAATGCAAGGTAGATCCATGTGCTTTTAGGCTGTTTG
CTGCAGATAATGAGGCGAGTTTGATTGTTTTTGTGCATGTTGATGGTATC
ACTATTGCGGCTAAAATCAAGGCTATGTGCGACTGTTTCATTGTGCAACT
TATTGAGGAGTTCAAAACCAACGAATTGGGCGACCTCTATTGGTTCTTGA
GCTATGCATTCGTGCGTGACCGGGAGAAGGGAACCCATTTTATGCCCCAA
CCAACGTTCATTAACTCAATTATACGTCGGTTTAGTGTTGGGACCACGTC
CAACATCCCGGCGTTCACTACGTACGATTTAGGACCCAAACGGGAGGATG
AGGTGCAGTGCAATCAACCGTACAAGCAGGTGGCAGGGTGTCTTCTTTGG
ATAGCC
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