mRNA_H-elongata_contig64230.14011.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.580e-21 Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQS-RDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
M+ A TRPD++F H L++F ++PGP HW AA +ALRY T+ + GG S + +SAYVD +YA CPDT+ SG +L G ISW ++ Q + +++E+E+VAL
Sbjct: 1488 MYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVAL 1600
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.780e-20 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRD--VAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 339
M+ A TRPD+++ L++F ++PGP HW A +ALRY T+ I GG+ S D +SAYVD+NYA C DT+ SG L G +SW ++ Q L +++E+E+VALA
Sbjct: 14 MYLAMGTRPDLAYTLQQLSQFLHNPGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLSTTEAEFVALA 128
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9GYL9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GYL9_FAGSY) HSP 1 Score: 94.7 bits (234), Expect = 1.890e-20 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
M+A TRPDI+FA L +F +DPG HW AA K LRY RTKD +TY +S + + Y D++YA C D SG +L GGAISW S Q LTAS++ ++EYVA
Sbjct: 140 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADVLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 248
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.040e-20 Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQS-RDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
M+ A TRPD++F L++F ++PGP HW AA +ALRY T+ + GG S + +SAYVD++YA CPDT+ SG +L G ISW ++ Q + +++E+E+VAL
Sbjct: 639 MYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVAL 751
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY) HSP 1 Score: 94.4 bits (233), Expect = 4.030e-20 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
M+A TRPDI+FA L +F +DPG HW AA K LRY RTKD +TY +S + + Y D++YA C D SG +L GGAISW S Q LTAS++ ++EYVA
Sbjct: 479 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 587
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY) HSP 1 Score: 94.4 bits (233), Expect = 4.130e-20 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
M+A TRPDI+FA L +F +DPG HW AA K LRY RTKD +TY +S + + Y D++YA C D SG +L GGAISW S Q LTAS++ ++EYVA
Sbjct: 585 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 693
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY) HSP 1 Score: 94.4 bits (233), Expect = 4.290e-20 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
M+A TRPDI+FA L +F +DPG HW AA K LRY RTKD +TY +S + + Y D++YA C D SG +L GGAISW S Q LTAS++ ++EYVA
Sbjct: 787 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 895
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR) HSP 1 Score: 94.0 bits (232), Expect = 5.820e-20 Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRD-VAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 339
M+AA TRPDI++A L+++C++PGP HW A + LRY T++ + YG D + + Y D++YA D + SG A +LGG A +W S+ Q A++S+E+EY ALA
Sbjct: 1199 MYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYGNTSDSDEIVSTGYSDADYAANVDDRKSISGYAFMLGGAAYAWSSKKQSTVATSSTEAEYTALA 1312
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: UPI001AD92C46 (secreted RxLR effector protein 161-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD92C46) HSP 1 Score: 90.5 bits (223), Expect = 6.370e-20 Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
M+A +RPDISFA + L+++ +PG HW K LRY RTKD + Y ++ ++ + AY D++Y + D SG +LGGGA+SW + Q LTA+++ ++EY+A+
Sbjct: 14 MYAQVCSRPDISFAVNILSRYQENPGHEHWVTGKKVLRYLKRTKDYMLVYKKIEGQEFEIKAYADASYKSDMDDLKSTSGYIFILGGGAVSWKTAKQSLTAASTFQAEYIAI 125
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9IBJ6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBJ6_FAGSY) HSP 1 Score: 92.4 bits (228), Expect = 7.520e-20 Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
M+A TRP+I+FA L +F +DPG HW AA K LRY RTKD +TY +S + + Y D++YA C D SG +L GGAISW S Q LTAS++ ++EYVA
Sbjct: 144 MYAQVCTRPNIAFAISVLGRFQSDPGMDHWRAANKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADVLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64230.14011.1 >prot_H-elongata_contig64230.14011.1 ID=prot_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYback to top mRNA from alignment at H-elongata_contig64230:2189..2542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64230.14011.1 ID=mRNA_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig64230:2189..2542+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64230:2189..2542+ >mRNA_H-elongata_contig64230.14011.1 ID=mRNA_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig64230:2189..2542+ (Himanthalia elongata Himel1 dioecious)back to top |