mRNA_H-elongata_contig64230.14011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64230.14011.1
Unique NamemRNA_H-elongata_contig64230.14011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.580e-21
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQS-RDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
            M+ A  TRPD++F  H L++F ++PGP HW AA +ALRY   T+   +  GG  S  +  +SAYVD +YA CPDT+   SG  +L  G  ISW ++ Q +   +++E+E+VAL
Sbjct: 1488 MYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVAL 1600          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.780e-20
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRD--VAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 339
            M+ A  TRPD+++    L++F ++PGP HW A  +ALRY   T+   I  GG+ S D    +SAYVD+NYA C DT+   SG   L  G  +SW ++ Q L   +++E+E+VALA
Sbjct:   14 MYLAMGTRPDLAYTLQQLSQFLHNPGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLSTTEAEFVALA 128          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9GYL9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GYL9_FAGSY)

HSP 1 Score: 94.7 bits (234), Expect = 1.890e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
            M+A   TRPDI+FA   L +F +DPG  HW AA K LRY  RTKD  +TY   +S  + +  Y D++YA C D     SG   +L GGAISW S  Q LTAS++ ++EYVA
Sbjct:  140 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADVLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 248          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.040e-20
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQS-RDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
            M+ A  TRPD++F    L++F ++PGP HW AA +ALRY   T+   +  GG  S  +  +SAYVD++YA CPDT+   SG  +L  G  ISW ++ Q +   +++E+E+VAL
Sbjct:  639 MYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVAL 751          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 94.4 bits (233), Expect = 4.030e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
            M+A   TRPDI+FA   L +F +DPG  HW AA K LRY  RTKD  +TY   +S  + +  Y D++YA C D     SG   +L GGAISW S  Q LTAS++ ++EYVA
Sbjct:  479 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 587          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 94.4 bits (233), Expect = 4.130e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
            M+A   TRPDI+FA   L +F +DPG  HW AA K LRY  RTKD  +TY   +S  + +  Y D++YA C D     SG   +L GGAISW S  Q LTAS++ ++EYVA
Sbjct:  585 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 693          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 94.4 bits (233), Expect = 4.290e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
            M+A   TRPDI+FA   L +F +DPG  HW AA K LRY  RTKD  +TY   +S  + +  Y D++YA C D     SG   +L GGAISW S  Q LTAS++ ++EYVA
Sbjct:  787 MYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR--RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 895          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR)

HSP 1 Score: 94.0 bits (232), Expect = 5.820e-20
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRD-VAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 339
            M+AA  TRPDI++A   L+++C++PGP HW A  + LRY   T++  + YG     D +  + Y D++YA   D +   SG A +LGG A +W S+ Q   A++S+E+EY ALA
Sbjct: 1199 MYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYGNTSDSDEIVSTGYSDADYAANVDDRKSISGYAFMLGGAAYAWSSKKQSTVATSSTEAEYTALA 1312          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: UPI001AD92C46 (secreted RxLR effector protein 161-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD92C46)

HSP 1 Score: 90.5 bits (223), Expect = 6.370e-20
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 336
            M+A   +RPDISFA + L+++  +PG  HW    K LRY  RTKD  + Y  ++ ++  + AY D++Y +  D     SG   +LGGGA+SW +  Q LTA+++ ++EY+A+
Sbjct:   14 MYAQVCSRPDISFAVNILSRYQENPGHEHWVTGKKVLRYLKRTKDYMLVYKKIEGQEFEIKAYADASYKSDMDDLKSTSGYIFILGGGAVSWKTAKQSLTAASTFQAEYIAI 125          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2N9IBJ6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBJ6_FAGSY)

HSP 1 Score: 92.4 bits (228), Expect = 7.520e-20
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MWAATMTRPDISFAAHNLTKFCNDPGPVHWEAAMKALRYF*RTKDLRITYGGVQSRDVAMSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 333
            M+A   TRP+I+FA   L +F +DPG  HW AA K LRY  RTKD  +TY   +S  + +  Y D++YA C D     SG   +L GGAISW S  Q LTAS++ ++EYVA
Sbjct:  144 MYAQVCTRPNIAFAISVLGRFQSDPGMDHWRAANKVLRYLQRTKDFMLTYR--RSDLLEVVGYADADYAGCADVLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0X7I6_9STRA3.580e-2143.36Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4YVS9_9STRA1.780e-2042.61Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2N9GYL9_FAGSY1.890e-2048.65Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6G0W6P6_9STRA3.040e-2042.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IDU9_FAGSY4.030e-2048.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GV19_FAGSY4.130e-2048.65Integrase catalytic domain-containing protein n=6 ... [more]
A0A2N9HDZ1_FAGSY4.290e-2048.65RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A8H6XNZ2_9AGAR5.820e-2041.23Uncharacterized protein n=1 Tax=Mycena sanguinolen... [more]
UPI001AD92C466.370e-2039.29secreted RxLR effector protein 161-like n=1 Tax=Ro... [more]
A0A2N9IBJ6_FAGSY7.520e-2047.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64230contigH-elongata_contig64230:2189..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size354
Cds size177
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.3589609-UTR-H-elongata_contig64230:2188..23651622931028.3589609-UTR-H-elongata_contig64230:2188..2365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64230 2189..2365 +
1691679668.0864112-UTR-H-elongata_contig64230:2188..23651691679668.0864112-UTR-H-elongata_contig64230:2188..2365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64230 2189..2365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.3788738-CDS-H-elongata_contig64230:2365..25421622931028.3788738-CDS-H-elongata_contig64230:2365..2542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64230 2366..2542 +
1691679668.0962481-CDS-H-elongata_contig64230:2365..25421691679668.0962481-CDS-H-elongata_contig64230:2365..2542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64230 2366..2542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64230.14011.1prot_H-elongata_contig64230.14011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64230 2366..2542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64230.14011.1

>prot_H-elongata_contig64230.14011.1 ID=prot_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEY
VALAKIVN*
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mRNA from alignment at H-elongata_contig64230:2189..2542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64230.14011.1 ID=mRNA_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig64230:2189..2542+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGCGGCCACCATGACAAGACCAGATATTTCGTTCGCGGCGCATAA CCTAACCAAGTTCTGCAACGATCCTGGACCAGTACACTGGGAGGCGGCGA TGAAGGCACTACGATACTTTTGACGGACGAAGGACTTACGTATCACCTAT GGTGGAGTTCAGTCAAGGGATGTAGCGATGTCAGCATACGTCGACTCCAA CTACGCAACATGCCCAGACACACAATGTTATGCATCGGGTGGGGCAGTTC TGCTGGGTGGCGGCGCGATTAGCTGGTTCTCGCGCGCACAAAGGCTAACA GCGTCGGCGTCATCCGAATCGGAGTATGTGGCGCTTGCGAAAATCGTTAA TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig64230:2189..2542+

>mRNA_H-elongata_contig64230.14011.1 ID=mRNA_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig64230:2189..2542+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGCATACGTCGACTCCAACTACGCAACATGCCCAGACACACAATG
TTATGCATCGGGTGGGGCAGTTCTGCTGGGTGGCGGCGCGATTAGCTGGT
TCTCGCGCGCACAAAGGCTAACAGCGTCGGCGTCATCCGAATCGGAGTAT
GTGGCGCTTGCGAAAATCGTTAATTAAATGTCAGCATACGTCGACTCCAA
CTACGCAACATGCCCAGACACACAATGTTATGCATCGGGTGGGGCAGTTC
TGCTGGGTGGCGGCGCGATTAGCTGGTTCTCGCGCGCACAAAGGCTAACA
GCGTCGGCGTCATCCGAATCGGAGTATGTGGCGCTTGCGAAAATCGTTAA
TTAA
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