mRNA_H-elongata_contig63845.13961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63845.13961.1
Unique NamemRNA_H-elongata_contig63845.13961.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A6H5KUV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 5.410e-31
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   22 VTCKPAKLEIPAHGKAEMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            V+CKPA+L+IPAHGKAEMKVEYVP +IN+ YRKT+TV+N  NPHG+ DVEI  SN DTHHVLYHSHFYKV
Sbjct:  138 VSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTLTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKV 207          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.450e-29
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   16 KVVTCKPAKLEIPAHGKAEMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            K V+CKPA+L+IPAHG AEMKVEYVP +IN+ YRKTVTV+N  NPHG+ DVEI  SN DTHHVLYHSHFYKV
Sbjct:  938 KAVSCKPARLDIPAHGTAEMKVEYVPRKINYKYRKTVTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKV 1009          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.760e-21
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   16 KVVTCKPAKLEIPAHGKAEMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            K V+C P  L IP  G A++K+EYVP +IN +YRKT+T++NC N  G  ++EI  +N+DTHH+LYHS FYKV
Sbjct: 2122 KAVSCTPTNLSIPPRGSADLKIEYVPRKINSHYRKTITLINCFNARGTREIEIRAANMDTHHILYHSAFYKV 2193          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A1V9YDG1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDG1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.470e-8
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 KVVTCKPA-KLEIPAHGKAEMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            KVV+  P  ++++      EMK+E +P ++N NY + ++VVN  N      V +  SN+D HHV+YHS FYK+
Sbjct:  734 KVVSTVPNDEMQLGPKQSVEMKIEIIPRKVNANYTRVISVVNLKNKLNQAQVCVRSSNMDAHHVIYHSLFYKL 806          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A6G0WUD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.880e-8
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            E+++E +P +IN NY + V+V+N  N   N  V +  SN+D HHV+YHS FYK+
Sbjct:  823 ELRIEIIPRKINPNYSRIVSVLNLKNKTNNAQVCVRSSNMDAHHVIYHSLFYKL 876          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A485LAB2_9STRA (Aste57867_18395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.240e-7
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            E+K+E +P +IN NY + VTV+N  N      V +  SN+D HHV+YHS FY++
Sbjct:  818 EVKIEIIPRKINPNYSRVVTVLNLKNKTNVAQVCVRSSNMDAHHVIYHSLFYRL 871          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A067C9G9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9G9_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 5.800e-7
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            EMK+E +P ++N NY + +  VN  N      V +  SN+D HHV+YHS FYK+
Sbjct:  752 EMKIEIIPRKVNANYTRVINAVNLKNKLNLAQVCVRSSNMDAHHVIYHSLFYKL 805          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A397BD28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BD28_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.460e-6
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            E+K+E +P + N NY + V+VVN  N      V +  SN+D HHV+YHS FYK+
Sbjct:  836 ELKIEIIPRKTNPNYSRVVSVVNLNNKANVATVCVRSSNMDAHHVIYHSLFYKL 889          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A024U7H7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7H7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.480e-6
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            E+K+E +P + N NY + V+VVN  N      V +  SN+D HHV+YHS FYK+
Sbjct:  832 ELKIEIIPRKTNPNYSRIVSVVNLKNKANVATVCVRSSNMDAHHVIYHSLFYKL 885          
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Match: A0A2D4BVL3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVL3_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 2.020e-6
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   70 EMKVEYVPGRINWNYRKTVTVVNCLNPHGNVDVEITGSNIDTHHVLYHSHFYKV 231
            E+K+E +P +IN NY + ++++N  N      V +  SN+D HHV+YHS FYK+
Sbjct:  185 ELKIEIIPRKINPNYSRLISIMNMKNKANIPQVCVRSSNMDAHHVIYHSLFYKL 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63845.13961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUV2_9PHAE5.410e-3177.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI1.450e-2976.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT04_9STRA8.760e-2155.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9YDG1_9STRA3.470e-839.73Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WUD1_9STRA8.880e-846.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LAB2_9STRA4.240e-746.30Aste57867_18395 protein n=1 Tax=Aphanomyces stella... [more]
A0A067C9G9_SAPPC5.800e-744.44Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A397BD28_9STRA1.460e-646.30Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024U7H7_9STRA1.480e-646.30Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A2D4BVL3_PYTIN2.020e-642.59Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63845contigH-elongata_contig63845:2525..2758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue4.4e-25
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.2192748-CDS-H-elongata_contig63845:2524..27581622931022.2192748-CDS-H-elongata_contig63845:2524..2758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63845 2525..2758 -
1691679665.8337436-CDS-H-elongata_contig63845:2524..27581691679665.8337436-CDS-H-elongata_contig63845:2524..2758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63845 2525..2758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63845.13961.1prot_H-elongata_contig63845.13961.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63845 2525..2758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63845.13961.1

>prot_H-elongata_contig63845.13961.1 ID=prot_H-elongata_contig63845.13961.1|Name=mRNA_H-elongata_contig63845.13961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MSDPEKVVTCKPAKLEIPAHGKAEMKVEYVPGRINWNYRKTVTVVNCLNP
HGNVDVEITGSNIDTHHVLYHSHFYKV*
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mRNA from alignment at H-elongata_contig63845:2525..2758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63845.13961.1 ID=mRNA_H-elongata_contig63845.13961.1|Name=mRNA_H-elongata_contig63845.13961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig63845:2525..2758- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACCCTGAGAAGGTGGTTACCTGCAAGCCGGCCAAGCTGGAGAT CCCGGCGCACGGGAAGGCCGAGATGAAGGTGGAGTACGTCCCGGGCAGGA TCAACTGGAATTACCGGAAGACGGTGACCGTGGTGAACTGCCTCAACCCT CACGGCAACGTGGACGTCGAGATCACGGGCAGCAACATCGACACGCACCA CGTGCTTTACCACTCTCACTTCTACAAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig63845:2525..2758-

>mRNA_H-elongata_contig63845.13961.1 ID=mRNA_H-elongata_contig63845.13961.1|Name=mRNA_H-elongata_contig63845.13961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig63845:2525..2758- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACCCTGAGAAGGTGGTTACCTGCAAGCCGGCCAAGCTGGAGAT
CCCGGCGCACGGGAAGGCCGAGATGAAGGTGGAGTACGTCCCGGGCAGGA
TCAACTGGAATTACCGGAAGACGGTGACCGTGGTGAACTGCCTCAACCCT
CACGGCAACGTGGACGTCGAGATCACGGGCAGCAACATCGACACGCACCA
CGTGCTTTACCACTCTCACTTCTACAAGGTATGAATGTCCGACCCTGAGA
AGGTGGTTACCTGCAAGCCGGCCAAGCTGGAGATCCCGGCGCACGGGAAG
GCCGAGATGAAGGTGGAGTACGTCCCGGGCAGGATCAACTGGAATTACCG
GAAGACGGTGACCGTGGTGAACTGCCTCAACCCTCACGGCAACGTGGACG
TCGAGATCACGGGCAGCAACATCGACACGCACCACGTGCTTTACCACTCT
CACTTCTACAAGGTATGA
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