mRNA_H-elongata_contig63783.13950.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A6H5KPV9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPV9_9PHAE) HSP 1 Score: 536 bits (1380), Expect = 7.180e-188 Identity = 246/293 (83.96%), Postives = 265/293 (90.44%), Query Frame = 1
Query: 10 AKVTPNGGMVWDGNGWIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRG-QKEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVTNGPAPS 885
AKVTPNG MVWDGNGWIAL DDD PP PKT SWKR+DT++FVGVSSFRDKRCPQTLVN+F+KA+ PER+TV +VQQNDHEDVDCV EYC+M G EGPLCP+FDNIKTLRVEA+ AAGPCYGRHLQ SYMLRDEEFCMQTDSHMDVVQDWDAKL+ MWGRVNNEYG+LTTYVH+IEQL EG ENKKEVPHLCQ+ FT+ +HPRYVQAKLATKLP PKLTNTWAAGLS+AKCHAWKA+PYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKV GP PS
Sbjct: 38 AKVTPNGAMVWDGNGWIALWDDDEAPRPPPPKTTSWKRSDTSIFVGVSSFRDKRCPQTLVNFFSKAKYPERITVGVVQQNDHEDVDCVVEYCKMMGGHAEGPLCPYFDNIKTLRVEARWAAGPCYGRHLQ--SYMLRDEEFCMQTDSHMDVVQDWDAKLMAMWGRVNNEYGILTTYVHKIEQLHEGYENKKEVPHLCQLGFTETGNHPRYVQAKLATKLPSPKLTNTWAAGLSLAKCHAWKASPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVKEGPQPS 328
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A835ZER6_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER6_9STRA) HSP 1 Score: 389 bits (1000), Expect = 8.140e-131 Identity = 190/299 (63.55%), Postives = 221/299 (73.91%), Query Frame = 1
Query: 16 VTPNGGMVWDGNGWIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQND-HEDVDCVAEYCRMRGQKE------GPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVH---RIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVTNGPAP 882
+ P G VWDGNGW ALVDDDS P P +ES+K + T+F+GVS+FRDKRCP+TL NYF+KA+NP RL V +VQQN ED DC+ YC + E G CP+ + IK RVEAK AAGPCYGRH+Q SYMLRDEEFCMQTDSHMDVV +WD ++ MWGR NEYGVLTTYVH I L++ + K VPHLCQVSFT ++PRYVQAKLA RPKLT +WAAG S AKCHAW+A PYDP L+ VFDGEEFSM ARLWTRGYD YTPD SL+GHDYN+ T+GP+P
Sbjct: 2 LVPTGAKVWDGNGWNALVDDDSLPKPHPPHSESYKDPNATIFIGVSAFRDKRCPKTLYNYFSKAKNPHRLRVGLVQQNSISEDPDCLQGYCDLMKADEKFATKFGDKCPYKEQIKITRVEAKLAAGPCYGRHMQ--SYMLRDEEFCMQTDSHMDVVPEWDEEMAAMWGRTENEYGVLTTYVHVKESIGTLEQAKDRNKLVPHLCQVSFTGG-NNPRYVQAKLAKLNGRPKLTTSWAAGFSFAKCHAWRAAPYDPHLKMVFDGEEFSMAARLWTRGYDFYTPDFSLIGHDYNRPTDGPSP 297
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A7S3YLX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLX0_HETAK) HSP 1 Score: 302 bits (774), Expect = 5.640e-96 Identity = 147/296 (49.66%), Postives = 192/296 (64.86%), Query Frame = 1
Query: 34 MVWDGNGWIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDH-EDVDCVAEYCRMRG-----------QKEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEG--MENKKEVPHLCQVSFTDNFDH------PRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNK 861
M +DG GWI L+++ P PK++SWK+ +TT+FVG+++FRD RCP+TL N FTKA+NP+R+ V +VQQ D +D DC+ +YC + G ++ CP F+ ++ RV A GP +GRHLQ SY+LRDEEFCMQTDSHMD + WD ++L WG +NEY VL TYV+R E L+ G + + +VPH+CQ+ + PR +AK A L RPKLT WAAG S KCH K TP DP L +FDGEE+S ARLWTRGYD YTP K+L+ HDYNK
Sbjct: 1 MAYDGIGWIPLIEEPRPPLPYPPKSDSWKQDNTTIFVGIAAFRDSRCPKTLFNMFTKAKNPDRVFVGLVQQWDETKDTDCIEKYCELMGAAVAGQDQAADRRRAQACPHFEQVRIHRVSHLLARGPTFGRHLQ--SYLLRDEEFCMQTDSHMDYIDHWDQEVLAAWGAAHNEYAVLATYVNRFEDLESGRALHPRFQVPHICQLEYVGGAYMGAKGMLPRNKRAKGAINLTRPKLTPFWAAGFSFLKCHGEKQTPNDPQLPGIFDGEEYSKGARLWTRGYDIYTPHKALIFHDYNK 294
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A836CB83_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB83_9STRA) HSP 1 Score: 295 bits (755), Expect = 6.450e-94 Identity = 137/272 (50.37%), Postives = 183/272 (67.28%), Query Frame = 1
Query: 55 WIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRGQKEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVTN 870
W+A+ D P P T+SW A+ TL+VG++S+RD RC +TL N FTKA++PER+ VA+VQQ D DC+ +YC + G+ CPF N++ LR +A AAGP +GRHLQ Y+LRDEEFC+Q DSHMD++QDW+A L+ W ++NNE+ VL+TYV +E L + E HLC++ + + R AK + +PKLT TWAAGLS +KCH+ +A PYDP L +VFDGEEFS ARL+T GYD YTP K+ +GHDYN N
Sbjct: 19 WVAVHRDLDGPQPFPPPTDSWSTAEATLWVGIASYRDPRCGKTLHNMFTKAKHPERVHVAVVQQMVEGDADCMDDYCALAGKDANGECPFAKNVRVLRTDAAEAAGPTWGRHLQ--QYLLRDEEFCLQIDSHMDMIQDWEAGLMAEWAQINNEHAVLSTYVQDVEDLGVNVGGHFETSHLCEILWEEQV---RNEGAKALRLMTQPKLTTTWAAGLSFSKCHSMRAVPYDPYLPQVFDGEEFSYFARLFTNGYDVYTPTKTYIGHDYNGANN 285
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: D7FQK5_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK5_ECTSI) HSP 1 Score: 291 bits (746), Expect = 3.430e-93 Identity = 139/269 (51.67%), Postives = 176/269 (65.43%), Query Frame = 1
Query: 55 WIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRGQKEGPL-CPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYN 858
WI + + P P+T+SW DTTL+ G++SFRD +C +TL N F+KA PERLT +VQQN +D C+A YCR+ G+K+G CPF DNI+ L + A A GPC+ RHLQ SY+L DEEFCMQ DSHMD V+ WD ++E W NNEYGVL+TYV L + K EV HLC+V F+ + PR QA ++ PKLT TW AG S +KCHA + PYDP L ++FDGEEFS ARLWT GYD YTP + + HDY+
Sbjct: 96 WIPITRSSTAPQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEGCLATYCRLMGEKDGKKDCPFRDNIRVLEMHASEAQGPCWARHLQ--SYLLADEEFCMQVDSHMDFVEGWDMAMMEEWAATNNEYGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPS-QQPRNQQA--IHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDRIFDGEEFSKMARLWTNGYDVYTPRRGHLVHDYS 359
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE) HSP 1 Score: 294 bits (752), Expect = 4.250e-92 Identity = 138/269 (51.30%), Postives = 176/269 (65.43%), Query Frame = 1
Query: 55 WIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRGQKEGPL-CPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYN 858
WI + + P P+T+SW DTTL+ G++SFRD +C +TL N F+KA PERLT +VQQN +D C+A YCR+ G K+G CPF +NI+ L + A A GPC+ RHLQ SY+L DEEFCMQ DSHMD V+ WD ++E W NNEYGVL+TYV L + K EV HLC+V F+ + PR QA+ ++ PKLT TW AG S +KCHA + PYDP L ++FDGEEFS ARLWT GYD YTP + + HDY+
Sbjct: 54 WIPITRSSTAPQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEGCLATYCRLMGVKDGAKDCPFRENIRVLEMHASEAQGPCWARHLQ--SYLLADEEFCMQVDSHMDFVEGWDMAMMEEWAATNNEYGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPS-QQPRNQQARAIHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDRIFDGEEFSKMARLWTNGYDVYTPRRGHLVHDYS 319
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A4D9D890_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D890_9STRA) HSP 1 Score: 291 bits (744), Expect = 2.020e-90 Identity = 143/287 (49.83%), Postives = 184/287 (64.11%), Query Frame = 1
Query: 49 NGWIALVDDDSDHAPPSP---KTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRGQKEG---------------PLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDY 855
NG D++ D P P KT+SW DT++ V +SSFRD RCP+TL N FTKA NP+R+ +VQQN+ DVDC+ +YC ++ G CP D +K LRV+A+ A GP YGR+L SY++ DEEFCMQ D+HMD WD +LL+MWG NNEYGVLTTYV ++QL + + EVP +C+V++T R QA L +PKLT+TWAAG + +KCHA TPYDP L +FDGEE+S +ARLWTRGYDTYTP +S+V HDY
Sbjct: 42 NGRWTQFDENDDAGVPQPYPPKTDSWTLNDTSIMVSISSFRDYRCPKTLYNLFTKAANPDRVYAGVVQQNNAGDVDCLNDYCEKIKEERGIGPDASAADPNLRITQNCPHADQVKMLRVQAEDAKGPTYGRYL--GSYLVGDEEFCMQIDAHMDFEDHWDKQLLDMWGLANNEYGVLTTYVPNLDQLHVNLNGRFEVPQVCRVTYTPGEKMVRNEQATNCIWLRKPKLTSTWAAGFAFSKCHADLKTPYDPHLPSLFDGEEYSKYARLWTRGYDTYTPHRSVVYHDY 326
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: A0A7S2XXE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE5_9STRA) HSP 1 Score: 229 bits (584), Expect = 2.920e-71 Identity = 110/214 (51.40%), Postives = 146/214 (68.22%), Query Frame = 1
Query: 55 WIALVDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRMRG----QKEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDE-EFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLT 681
W+ L + + P PK++S+ R+DTT++ G++SFRD RCP+TLVN F KA+ PER+ V +VQQN +DVDC+ EYC G +++ CP++ I+ LRV A+ A GP YGRHL SY+LRDE EFCMQTDSHMD V DWD K+L+MWG + NEYGV+TTYV+R E L + + EVPHLC + + D PR +AK L +PKLT
Sbjct: 44 WVVLKE--TGPQPHPPKSDSYTRSDTTIWNGIASFRDSRCPRTLVNLFQKAKYPERVYVGLVQQNGDDDVDCLEEYCNRMGSTNRKEDEAKCPYYSQIRILRVHAREARGPTYGRHLM--SYLLRDEDEFCMQTDSHMDYVDDWDVKMLDMWGAIGNEYGVITTYVNRFEDLNKNLNGVNEVPHLCDLVWRDGL--PRNKEAKACRSLKKPKLT 251
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: X6MQK6_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MQK6_RETFI) HSP 1 Score: 228 bits (580), Expect = 1.290e-69 Identity = 125/300 (41.67%), Postives = 161/300 (53.67%), Query Frame = 1
Query: 49 NGWIAL--VDDDSDHAPPSPKTESWKRADTTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVA-------------------------EYCRMRGQ----KEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKEGMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDY 855
N WI + VD PP P +SWK DT ++VG+SS D RC +TL + T A+NPER+ + IVQQND E DC+ EYC M + K+ CP+ +N+KT+R+ + A GP R LQ M EEFCMQ DSH + WD ++L+ WG NNE VLTTY+ E L + + EVPHLC F D+F P +A A L +P L WA GLS +KCHA YD L +++ GEEF ARLWT GYD YTP K+++ HDY
Sbjct: 13 NTWIEVQYVDLSGPERPP-PNDDSWKSLDTAIYVGISSLMDDRCGRTLHSLLTTAKNPERVHIGIVQQNDKETKDCIEDIQTSKRFANSDQFFLETKCMQKKKEYCAMMKKEAKDKKEEDCPYVNNVKTIRITNEEAKGPNLARGLQL--LMHDGEEFCMQIDSHSFAGKAWDVQMLQDWGACNNELAVLTTYIGSPENLGQNVMGAHEVPHLCTAYFNDDF--PFNDRASAARNLQKPILAPLWAGGLSFSKCHAEWIVKYDVNLLQIWTGEEFGRGARLWTHGYDFYTPTKAIIAHDY 307
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Match: F0Y7S9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7S9_AURAN) HSP 1 Score: 228 bits (581), Expect = 4.080e-67 Identity = 121/288 (42.01%), Postives = 161/288 (55.90%), Query Frame = 1
Query: 55 WIALVD-DDSDHAPPSPKTESWKRAD---TTLFVGVSSFRDKRCPQTLVNYFTKARNPERLTVAIVQQNDHEDVDCVAEYCRM----RGQKEGPLCPFFDNIKTLRVEAKHAAGPCYGRHLQASSYMLRDEEFCMQTDSHMDVVQDWDAKLLEMWGRVNNEYGVLTTYVHRIEQLKE-----GMENKKEVPHLCQVSFTDNFDHPRYVQAKLATKLPRPKLTNTWAAGLSVAKCHAWKATPYDPGLRKVFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVTNGPA 879
W+ +VD +D D + P P + D + +FV +++FRD C TL F +A P+R+ VA+VQQN ED DC YC RG + CP+ D+I R + A GP + R Q + + D EFC++TDSHM DWD K + W NEY VL+TYV Q+ E + N EVPHLC + + D H R +QAK A L +PKLT WAAGLS ++CHA +A PYDP +F GEEFS AR +T GYD YTP +++V HDY P+
Sbjct: 32 WVKVVDAEDVDSSAPVPCPPAGAPGDHDASIVFVAIAAFRDSLCATTLEGLFGRAEYPDRVRVAVVQQNKPEDDDCYEAYCAKARASRGLGDDAPCPYGDHISVKRFSSDEAKGPTWAR-AQDADMLPDDAEFCLRTDSHMAFANDWDTKQIAQWYGARNEYAVLSTYVADANQINEDGSEKNINNVWEVPHLCSILWQDG--HVRNMQAKAARLLEKPKLTTLWAAGLSFSRCHAERAVPYDPHTPYIFWGEEFSRTARFFTNGYDIYTPPRTIVAHDYKHTQGDPS 316 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63783.13950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63783.13950.1 >prot_H-elongata_contig63783.13950.1 ID=prot_H-elongata_contig63783.13950.1|Name=mRNA_H-elongata_contig63783.13950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=295bp MVDAKVTPNGGMVWDGNGWIALVDDDSDHAPPSPKTESWKRADTTLFVGVback to top mRNA from alignment at H-elongata_contig63783:1067..3228+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63783.13950.1 ID=mRNA_H-elongata_contig63783.13950.1|Name=mRNA_H-elongata_contig63783.13950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2162bp|location=Sequence derived from alignment at H-elongata_contig63783:1067..3228+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63783:1067..3228+ >mRNA_H-elongata_contig63783.13950.1 ID=mRNA_H-elongata_contig63783.13950.1|Name=mRNA_H-elongata_contig63783.13950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1770bp|location=Sequence derived from alignment at H-elongata_contig63783:1067..3228+ (Himanthalia elongata Himel1 dioecious)back to top |