mRNA_H-elongata_contig63260.13900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63260.13900.1
Unique NamemRNA_H-elongata_contig63260.13900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 323 bits (827), Expect = 5.200e-104
Identity = 162/217 (74.65%), Postives = 179/217 (82.49%), Query Frame = 1
Query:    1 GGIESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDEGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFCVPESQEDDVS-EILDVEAVEDQAFAEL 648
            GG   VFLLPMAV EGSP HPAYPSGHA+NLGAY+TVLKAFLGFE GQRCFPSP +SNDAGTDRI +  S  DR+G C+N +G++E GLTYEGELNKV +NV +GRSHLGVH+RMDGVFGAEMGEAGAIRRLQQELGGLPEARD+ EG IP ASYKFRLYSG MIELFP N Y L DQMCKG FTGDDFCVP  +E+    E L + +V DQ  AEL
Sbjct:  426 GGTNQVFLLPMAVGEGSPVHPAYPSGHAINLGAYLTVLKAFLGFELGQRCFPSPMISNDAGTDRIPFVPSDGDRVGTCINEDGEEEVGLTYEGELNKVTSNVAIGRSHLGVHWRMDGVFGAEMGEAGAIRRLQQELGGLPEARDT-EGPIPPASYKFRLYSGTMIELFPDNRYMLGDQMCKGFFTGDDFCVPADEEETAELEDLVLGSVVDQTCAEL 641          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.880e-82
Identity = 135/213 (63.38%), Postives = 162/213 (76.06%), Query Frame = 1
Query:   10 ESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSD----EGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFCVPESQEDDVSEILDVEAVEDQA 636
            E  FLLPMA  +GSP HPAYPSGHA+N GAYIT LKAFLG+E GQ+CFP+P VSND GT RI Y+ S  + +G CVN  G    GLTYEGELNK++ANV+LGRSH+GVH+RMDGV+GA MGE   +RRLQQEL GLPEAR+ +     G IP A+YKFRLYSGK++EL+  NLYKL+ ++C+G FTGDDFC P   EDD S   D+  VE+ A
Sbjct:  463 EKTFLLPMAAAQGSPTHPAYPSGHAINNGAYITALKAFLGYEAGQKCFPNPVVSNDEGTKRIKYKPSGREIVGECVNEKGKLVEGLTYEGELNKISANVLLGRSHIGVHWRMDGVYGALMGETSCVRRLQQELPGLPEAREVEGKKRRGDIPPATYKFRLYSGKILELYGRNLYKLDGKLCEGAFTGDDFCDP-IDEDDYSSFDDI--VEEHA 672          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 265 bits (677), Expect = 2.630e-81
Identity = 136/215 (63.26%), Postives = 163/215 (75.81%), Query Frame = 1
Query:    1 GGIESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDE---GSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFCVPESQEDDVSEILDVEAVEDQA 636
            G  E  FLLPMA  +GSP HPAYPSGHA+N+GAYIT LKAFLGFE GQRCFP P VSN+ GT+RI Y  S  + +G C+N+ G    GLTYEGELNKV+ANV++GRSHLGVH+RMDGV+GA +GE  A+RRLQQEL GL EAR +D+     IP A+Y FRLYSGKM+EL+ +NLYKL+ ++C+G FTGDDFC  E QEDD      +  VED A
Sbjct:  459 GDGEKTFLLPMASAQGSPTHPAYPSGHAINVGAYITSLKAFLGFEAGQRCFPDPVVSNNEGTERIPYVPSGREIVGECINDKGKKVDGLTYEGELNKVSANVLIGRSHLGVHWRMDGVYGALVGEVSAVRRLQQELPGLAEARPNDDLKRKEIPPATYNFRLYSGKMLELYGANLYKLDGKLCEGAFTGDDFC-DEVQEDDYESFEHI--VEDLA 670          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 265 bits (677), Expect = 3.310e-81
Identity = 136/215 (63.26%), Postives = 163/215 (75.81%), Query Frame = 1
Query:    1 GGIESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDE---GSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFCVPESQEDDVSEILDVEAVEDQA 636
            G  E  FLLPMA  +GSP HPAYPSGHA+N+GAYIT LKAFLGFE GQRCFP P VSN+ GT+RI Y  S  + +G C+N+ G    GLTYEGELNKV+ANV++GRSHLGVH+RMDGV+GA +GE  A+RRLQQEL GL EAR +D+     IP A+Y FRLYSGKM+EL+ +NLYKL+ ++C+G FTGDDFC  E QEDD      +  VED A
Sbjct:  470 GDGEKTFLLPMASAQGSPTHPAYPSGHAINVGAYITSLKAFLGFEAGQRCFPDPVVSNNEGTERIPYVPSGREIVGECINDKGKKVDGLTYEGELNKVSANVLIGRSHLGVHWRMDGVYGALVGEVSAVRRLQQELPGLAEARPNDDLKRKEIPPATYNFRLYSGKMLELYGANLYKLDGKLCEGAFTGDDFC-DEVQEDDYESFEHI--VEDLA 681          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 7.010e-79
Identity = 122/190 (64.21%), Postives = 147/190 (77.37%), Query Frame = 1
Query:   10 ESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSD---EGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFC 570
            E  FLLPMA  +GSP HPAYPSGHA+NLG YIT LKAF+GFE GQ+CFP+P  S+D G  R+ Y  + T+ L  CV+ +G+   GLT EGELNKVA+NVI+GRSHLGVH+RMDGV+GA MGE  A+RRLQQEL GLPEAR  D      IP A+YKFRLYSGKM+E+F   L++L+ Q+CKG +TGDDFC
Sbjct:  212 EKTFLLPMATAQGSPNHPAYPSGHAINLGGYITTLKAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQELSGLPEARVVDGARSDDIPPATYKFRLYSGKMLEIFSVTLFRLDGQLCKGAYTGDDFC 401          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 7.180e-76
Identity = 125/188 (66.49%), Postives = 149/188 (79.26%), Query Frame = 1
Query:   10 ESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKV-SNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDEGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFC 570
            +  +LLPMAV EGSP HPAYPSGHA+NLGAYIT LKAFLGFE GQRC+    V SND GT RI+Y     +    C++ NG +  GLTYEGELNKVA+NVI+GRSH+GVHYRMDGV+GA MGE  A+RRLQQEL  L EARD+ +GSIP ASYKFRLYSGK++EL   +++KL+ + CKGL+TGDDFC
Sbjct:  433 DGTYLLPMAVAEGSPVHPAYPSGHAINLGAYITTLKAFLGFELGQRCYLGDLVVSNDEGTKRIEYVPRKGE---TCIDQNGREVQGLTYEGELNKVASNVIIGRSHIGVHYRMDGVYGALMGETSAVRRLQQELPNLSEARDT-KGSIPPASYKFRLYSGKVLELLAKDIFKLDGRTCKGLYTGDDFC 616          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 8.250e-75
Identity = 122/190 (64.21%), Postives = 145/190 (76.32%), Query Frame = 1
Query:   10 ESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSD---EGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKGLFTGDDFC 570
            E  FLLPMA  +GSP HPAYPSGHA+NLG YIT LKAF+GFE GQ+CFP+   S+D G  R+ Y  + T+ L  CV+ +G+   GLT EGELNKVA+NVI+GRSHLGVH+RMDGV GA MGE  A+RRLQQEL GLPEAR  D      IP A+YKFRLYSGKM+E+F   LY+L+ Q+CKG +TGDDFC
Sbjct:  429 EKTFLLPMATAQGSPNHPAYPSGHAINLGGYITTLKAFVGFEAGQKCFPNLVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVSGALMGETSAVRRLQQELSGLPEARVVDGARSDDIPPATYKFRLYSGKMLEIFGVTLYRLDGQLCKGAYTGDDFC 618          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.050e-36
Identity = 83/192 (43.23%), Postives = 106/192 (55.21%), Query Frame = 1
Query:    1 GGIESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAG-LTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDEGSIPQASYKFRLYSGKMIELFPSNLYKLEDQMCKG-LFTGDDFC 570
            G ++  +LL  A+PEGSP HP+YP+GHA   GA+ TVLKA +G ERG  CF  P   +D G   + Y               GDD    LT+EGE+NK+A NV LGR+ LGVH+R+D   G  +GE  A+R LQQE    PE           A Y+FRL SGK I L     + ++D +C G  F G D C
Sbjct:  457 GVLDRTYLLSQALPEGSPTHPSYPAGHATQNGAFATVLKALVGLERGSVCFNDPVFPDDEGLTLLPYT--------------GDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPE----------NAGYEFRLMSGKTIRLETDGTFFIDDTLCSGDAFMGADLC 624          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 131 bits (330), Expect = 1.230e-31
Identity = 75/162 (46.30%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    4 GIESVFLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDEGSIPQASYKFRLYSGK 489
            GI S FLLP  V EGSP HP+YPSGHAV  GA+ T+LKA +G ERG  CF  P V +D G   + +          C          LT+EGE+NK AANV LGR+ +GVH+RMD   G  +GE  A+R L QEL G PE             Y+FR+ SG+
Sbjct:  440 GIPSTFLLPQTVREGSPTHPSYPSGHAVQNGAFSTILKALVGLERGLECFNDPVVPSDDGLTLLPFDG--------C----------LTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQELAGFPELEP----------YEFRVMSGE 573          
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Match: UPI00054CF2F9 (phosphatase PAP2 family protein n=1 Tax=Ectobacillus panaciterrae TaxID=363872 RepID=UPI00054CF2F9)

HSP 1 Score: 103 bits (256), Expect = 8.790e-22
Identity = 59/127 (46.46%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   19 FLLPMAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDAGTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLGVHYRMDGVFGAEMGEAGAIRRLQ 399
            +LLPMA PEG P HPAYP+GHA   GA +TVLKAF          P+P V+N  G   + Y  SP                 LT  GELNK+AAN+ +GR   GVH+R DG+ G ++GEA AI  LQ
Sbjct:  381 YLLPMAYPEGCPTHPAYPAGHACIAGAGVTVLKAFFN---ESFVIPNPVVANSDGRSLLSYSGSP-----------------LTIGGELNKLAANIAIGRDTAGVHWRSDGIEGLKLGEAVAIGILQ 487          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63260.13900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO5.200e-10474.65Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
Q7X9V0_9PHAE1.880e-8263.38Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
A0A3G3BM34_SACJA2.630e-8163.26Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
A0A411NJW8_SACJA3.310e-8163.26Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
B7ZGM5_9PHAE7.010e-7964.21Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
D8LTP5_ECTSI7.180e-7666.49Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
B7ZGM1_9PHAE8.250e-7564.21Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
Q4LDE6_9PHAE4.050e-3643.23Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA1.230e-3146.30Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
UPI00054CF2F98.790e-2246.46phosphatase PAP2 family protein n=1 Tax=Ectobacill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63260contigH-elongata_contig63260:1298..3159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue2.4e-62
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size690
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63260.13900.1prot_H-elongata_contig63260.13900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63260 1328..3120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.9269965-UTR-H-elongata_contig63260:1297..13271622931015.9269965-UTR-H-elongata_contig63260:1297..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 1298..1327 +
1691679663.2150116-UTR-H-elongata_contig63260:1297..13271691679663.2150116-UTR-H-elongata_contig63260:1297..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 1298..1327 +
1622931016.0469584-UTR-H-elongata_contig63260:3120..31591622931016.0469584-UTR-H-elongata_contig63260:3120..3159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 3121..3159 +
1691679663.2864761-UTR-H-elongata_contig63260:3120..31591691679663.2864761-UTR-H-elongata_contig63260:3120..3159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63260 3121..3159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.9483342-CDS-H-elongata_contig63260:1327..14141622931015.9483342-CDS-H-elongata_contig63260:1327..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1328..1414 +
1691679663.2241545-CDS-H-elongata_contig63260:1327..14141691679663.2241545-CDS-H-elongata_contig63260:1327..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1328..1414 +
1622931015.9700577-CDS-H-elongata_contig63260:1689..18631622931015.9700577-CDS-H-elongata_contig63260:1689..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1690..1863 +
1691679663.232003-CDS-H-elongata_contig63260:1689..18631691679663.232003-CDS-H-elongata_contig63260:1689..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 1690..1863 +
1622931015.9851456-CDS-H-elongata_contig63260:2126..22371622931015.9851456-CDS-H-elongata_contig63260:2126..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2127..2237 +
1691679663.2396405-CDS-H-elongata_contig63260:2126..22371691679663.2396405-CDS-H-elongata_contig63260:2126..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2127..2237 +
1622931016.0015833-CDS-H-elongata_contig63260:2425..25121622931016.0015833-CDS-H-elongata_contig63260:2425..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2426..2512 +
1691679663.2556252-CDS-H-elongata_contig63260:2425..25121691679663.2556252-CDS-H-elongata_contig63260:2425..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2426..2512 +
1622931016.016327-CDS-H-elongata_contig63260:2767..28511622931016.016327-CDS-H-elongata_contig63260:2767..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2768..2851 +
1691679663.271413-CDS-H-elongata_contig63260:2767..28511691679663.271413-CDS-H-elongata_contig63260:2767..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 2768..2851 +
1622931016.030417-CDS-H-elongata_contig63260:3042..31201622931016.030417-CDS-H-elongata_contig63260:3042..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 3043..3120 +
1691679663.2788951-CDS-H-elongata_contig63260:3042..31201691679663.2788951-CDS-H-elongata_contig63260:3042..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63260 3043..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63260.13900.1

>prot_H-elongata_contig63260.13900.1 ID=prot_H-elongata_contig63260.13900.1|Name=mRNA_H-elongata_contig63260.13900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MAVPEGSPAHPAYPSGHAVNLGAYITVLKAFLGFERGQRCFPSPKVSNDA
GTDRIDYQSSPTDRLGVCVNNNGDDEAGLTYEGELNKVAANVILGRSHLG
VHYRMDGVFGAEMGEAGAIRRLQQELGGLPEARDSDEGSIPQASYKFRLY
SGKMIELFPSNLYKLEDQMCKGLFTGDDFCVPESQEDDVSEILDVEAVED
QAFAEL*
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mRNA from alignment at H-elongata_contig63260:1298..3159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63260.13900.1 ID=mRNA_H-elongata_contig63260.13900.1|Name=mRNA_H-elongata_contig63260.13900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1862bp|location=Sequence derived from alignment at H-elongata_contig63260:1298..3159+ (Himanthalia elongata Himel1 dioecious)
GGTGGAATCGAAAGCGTTTTCCTCCTCCCAATGGCCGTCCCTGAGGGTTC GCCCGCGCACCCCGCATATCCGAGTGGACACGCCGTCAATCTCGGCGCTT ATATCACTGTGCTCAAGGTTAGGGCACCGATGCCAATTTTCCAATCAATA GCTTGATATCTGTATCATGAGCCCCTCCCTTCTCTGTGGCCTGTAGCCGT GCATTATTTACTTCTTTTACAACGATCGCACCCCGACGAGCTTCTTTGCC TTCGAAATTTTAGCCCTTTTTCGTTCCGTGCTCAGAGAACGCCTTGCAAG AAAGGCGCAGAAACCAACAGCCGTCAGTGTTCCTGTCACGATTACTTGAT CACACCCCCCGCTCCCCTCGGTATATTTCCCGATATCACCAGGCTTTCCT TGGCTTCGAGCGCGGGCAGCGTTGCTTCCCCTCGCCGAAGGTCTCAAATG ACGCTGGCACGGATCGGATCGATTACCAGTCGTCTCCAACGGACCGCTTG GGTGTCTGTGTTAACAACAACGGGGATGACGAGGCTGGGCTCACGTACGA GGGCGAGCTTAACAAGGCAAGCCGATACATCTGTATCATATCGTCGGGCG CTACTCGATTAACTGGCCTGATTCAGCAGTTCTGATATTTTGAGCCGAGC TTCCATCTTGGGACTTCAAACTATAGATTTTCGTTTGAGTGATTACTACG CTTTCCATATCGGCACTACGAATTAATTCATTTTGGGTTGCGAAAATTGA AAACAATGCCGCACGCGGAAGCACTTTTTCAAATCTCAGACGGATATGCC CACGTTGACCTTATTTCAAATGCTGCCAGGTGGCCGCGAACGTCATCTTG GGTCGATCGCATCTAGGTGTCCACTACCGTATGGATGGTGTCTTCGGTGC TGAGATGGGCGAGGCCGGTGCCATCCGCCGCCTGCAGCAGGTGCATTATT CCACTCGAAACAATGGAATGTTCAGAGCGACTTTCACCTAGTTAAGACGA TCGACCCAGAAAATATTACAACCCGATTCCATTCGATAGCGACATCATCT TGATGATGTCCATACTTTCTTCCATCGTGGCCGTTTGCGCGTCCTCCGTG AATTATTTTGAAATCTATTGCCCAGCAGGAACTCGGTGGTCTTCCCGAGG CCAGGGACAGCGATGAGGGGTCCATTCCTCAAGCGTCATACAAGTTCCGC CTATATAGCGGCAAGGTGGGTCATTCCAGACACACAGGAGAGAGCGGGCC AGGTCTTCTCGCATTTCAACTGTTTTCTCATTGTGACTTTATTTGATTAC TTTATTTTGCGCAGGGCACAAAGACATCAATTGCTTGATATGTTTCCCCT TGTTTGAGCCAGTGGTGGGAGAAGCATCGTCAGGATTAACGCGCCCTAGA TCTAACATTATCAATCAATATATTACACATGTTCCCCACCCCTTACCTCG ATTGTCGTCTGCTCAAGCAGATGATTGAGCTGTTCCCCAGCAACCTTTAC AAGCTGGAGGACCAAATGTGCAAAGGCTTGTTTACGGGCGATGACTTTTG TGTGGTAAGTATGCGACCGTCCAAGTGTGGCTCTGTATGCTTAGAGCCCT TCCTAAGGCGTACATGCGTGATTACTGTTACTTCGATTCTTCTACATTAT TGGTTTATTAGACGGCGCTTGATGCACGAACTTTATTACGCAGTGGTTAG CCCATATCAATCTCTGCCATCTGGCCCTCGTGCTCTTGCTCGCAGCCGGA AAGCCAGGAGGACGACGTGTCTGAGATTCTCGATGTTGAGGCGGTCGAAG ACCAAGCCTTCGCCGAGCTATAACGGAGAATGAAATAGTGGAATGATACA TTGCATCTCATA
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Coding sequence (CDS) from alignment at H-elongata_contig63260:1298..3159+

>mRNA_H-elongata_contig63260.13900.1 ID=mRNA_H-elongata_contig63260.13900.1|Name=mRNA_H-elongata_contig63260.13900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig63260:1298..3159+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGTCCCTGAGGGTTCGCCCGCGCACCCCGCATATCCGAGTGGACA
CGCCGTCAATCTCGGCGCTTATATCACTGTGCTCAAGATGGCCGTCCCTG
AGGGTTCGCCCGCGCACCCCGCATATCCGAGTGGACACGCCGTCAATCTC
GGCGCTTATATCACTGTGCTCAAGGCTTTCCTTGGCTTCGAGCGCGGGCA
GCGTTGCTTCCCCTCGCCGAAGGTCTCAAATGACGCTGGCACGGATCGGA
TCGATTACCAGTCGTCTCCAACGGACCGCTTGGGTGTCTGTGTTAACAAC
AACGGGGATGACGAGGCTGGGCTCACGTACGAGGGCGAGCTTAACAAGGC
TTTCCTTGGCTTCGAGCGCGGGCAGCGTTGCTTCCCCTCGCCGAAGGTCT
CAAATGACGCTGGCACGGATCGGATCGATTACCAGTCGTCTCCAACGGAC
CGCTTGGGTGTCTGTGTTAACAACAACGGGGATGACGAGGCTGGGCTCAC
GTACGAGGGCGAGCTTAACAAGGTGGCCGCGAACGTCATCTTGGGTCGAT
CGCATCTAGGTGTCCACTACCGTATGGATGGTGTCTTCGGTGCTGAGATG
GGCGAGGCCGGTGCCATCCGCCGCCTGCAGCAGGTGGCCGCGAACGTCAT
CTTGGGTCGATCGCATCTAGGTGTCCACTACCGTATGGATGGTGTCTTCG
GTGCTGAGATGGGCGAGGCCGGTGCCATCCGCCGCCTGCAGCAGGAACTC
GGTGGTCTTCCCGAGGCCAGGGACAGCGATGAGGGGTCCATTCCTCAAGC
GTCATACAAGTTCCGCCTATATAGCGGCAAGGAACTCGGTGGTCTTCCCG
AGGCCAGGGACAGCGATGAGGGGTCCATTCCTCAAGCGTCATACAAGTTC
CGCCTATATAGCGGCAAGATGATTGAGCTGTTCCCCAGCAACCTTTACAA
GCTGGAGGACCAAATGTGCAAAGGCTTGTTTACGGGCGATGACTTTTGTG
TGATGATTGAGCTGTTCCCCAGCAACCTTTACAAGCTGGAGGACCAAATG
TGCAAAGGCTTGTTTACGGGCGATGACTTTTGTGTGCCGGAAAGCCAGGA
GGACGACGTGTCTGAGATTCTCGATGTTGAGGCGGTCGAAGACCAAGCCT
TCGCCGAGCTATAACCGGAAAGCCAGGAGGACGACGTGTCTGAGATTCTC
GATGTTGAGGCGGTCGAAGACCAAGCCTTCGCCGAGCTATAA
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