mRNA_H-elongata_contig63043.13882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63043.13882.1
Unique NamemRNA_H-elongata_contig63043.13882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.820e-28
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREV 186
            VL CNPNAGYYESMV+AG+G RNWVSFY S GCDVF+FNYRGY RSGG+ SP+ INKDVRE+
Sbjct:  488 VLFCNPNAGYYESMVLAGEGGRNWVSFYTSVGCDVFLFNYRGYGRSGGKASPANINKDVREI 549          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.980e-16
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVM-AGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYK 201
            VL CNPNAG+YE M + AG   R+W S+Y + GC VF+FNYRG+ RS G P+P+++  D  E  Q+ +
Sbjct:  334 VLFCNPNAGFYEGMCLGAGTEHRDWASYYSAIGCHVFLFNYRGFGRSQGVPTPARLQADACEAVQYLR 401          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A7S1AQK0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AQK0_NOCSC)

HSP 1 Score: 72.8 bits (177), Expect = 2.550e-13
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKD 174
            ++ CNPNAGYYES+V+      +W++FY S GC+VF+FNY G+ RS G PSPS +  D
Sbjct:  330 IIWCNPNAGYYESLVVES----HWLNFYLSCGCNVFVFNYSGFGRSTGSPSPSSLAAD 383          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A8J1ZLQ9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZLQ9_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 2.570e-13
Identity = 33/64 (51.56%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQ 192
            V++CNPNAGYYES    GD    WV FY S  C V +FNYRG+ RS G   P  +  D R V Q
Sbjct:  353 VIMCNPNAGYYESTAFQGD----WVDFYLSLNCSVVLFNYRGFARSTGAVHPENVRADGRAVYQ 412          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A7S2RNC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.490e-13
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQ 192
            V+ CNPNAG YE    A   S +W+ FY   GC V ++NYRGY RS G PSP+  N D+ E+ Q
Sbjct:  336 VIFCNPNAGLYEC-ANASPKSSDWIQFYTEMGCQVIVWNYRGYGRSTGLPSPASNNADIAELVQ 398          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A0V0QQS5_PSEPJ (Hydrolase_4 domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QQS5_PSEPJ)

HSP 1 Score: 67.8 bits (164), Expect = 1.480e-11
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYKLFF 210
            ++ CNPNAGYYE +    +    WV FY+  G ++ ++NYRGY RS G P+P +I KD  ++  + +  F
Sbjct:  302 LIYCNPNAGYYECLYYDSE----WVEFYQKLGMNIVLWNYRGYGRSEGNPTPQRIQKDSEQLVDYVRNEF 367          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A485LBE7_9STRA (Aste57867_18394 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBE7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11
Identity = 33/67 (49.25%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYK 201
            VL+CNPN G YE      D    W+ FY   G +VF+FNYRGY R  G PSPS  N D   V  H K
Sbjct:  382 VLLCNPNCGLYEFHHFQSD----WIQFYTKYGVNVFVFNYRGYGRCKGYPSPSANNMDGMAVVAHLK 444          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: F0WL56_9STRA (Uncharacterized protein AlNc14C141G7244 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL56_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYK 201
            +L+CNPN G YE   +  D    WV FY   GCDV ++NYRGY R+ G P P+  N D   +  H K
Sbjct:  324 ILLCNPNGGLYEFHHIQTD----WVRFYIERGCDVLVYNYRGYGRNKGHPQPALNNADALAIIAHIK 386          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A6G0WU86_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU86_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.000e-11
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYK 201
            VL+CNPN G YE      D    W+ FY   G +VF+FNYRGY R  G PSP   N D   + +H K
Sbjct:  374 VLLCNPNCGLYEFHHFQSD----WIQFYTKFGINVFVFNYRGYGRCKGYPSPHANNMDGMAIIEHLK 436          
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Match: A0A7S2DCA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCA1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.980e-11
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRPSPSKINKDVREVSQHYK 201
            VL CNPNAG YE    +   + +WV  Y + G  V  FNYRGY RS G PSP++ + D   ++ H +
Sbjct:    3 VLFCNPNAGLYECAASSTKAT-DWVQLYTALGFHVVFFNYRGYGRSTGIPSPTRNSADGAAIALHLR 68          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63043.13882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE1.820e-2879.03AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A835YTB0_9STRA4.980e-1650.00Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
A0A7S1AQK0_NOCSC2.550e-1353.45Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A8J1ZLQ9_9DINO2.570e-1351.56Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S2RNC6_9STRA6.490e-1350.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0V0QQS5_PSEPJ1.480e-1140.00Hydrolase_4 domain-containing protein n=1 Tax=Pseu... [more]
A0A485LBE7_9STRA2.750e-1149.25Aste57867_18394 protein n=1 Tax=Aphanomyces stella... [more]
F0WL56_9STRA2.750e-1144.78Uncharacterized protein AlNc14C141G7244 n=1 Tax=Al... [more]
A0A6G0WU86_9STRA7.000e-1146.27AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
A0A7S2DCA1_9STRA7.980e-1143.28Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63043contigH-elongata_contig63043:457..965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog653948.CCA22017
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.0942383-CDS-H-elongata_contig63043:456..6011622931014.0942383-CDS-H-elongata_contig63043:456..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63043 457..601 -
1691679662.5269115-CDS-H-elongata_contig63043:456..6011691679662.5269115-CDS-H-elongata_contig63043:456..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63043 457..601 -
1622931014.1055138-CDS-H-elongata_contig63043:894..9651622931014.1055138-CDS-H-elongata_contig63043:894..965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63043 895..965 -
1691679662.5390127-CDS-H-elongata_contig63043:894..9651691679662.5390127-CDS-H-elongata_contig63043:894..965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63043 895..965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63043.13882.1prot_H-elongata_contig63043.13882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63043 457..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63043.13882.1

>prot_H-elongata_contig63043.13882.1 ID=prot_H-elongata_contig63043.13882.1|Name=mRNA_H-elongata_contig63043.13882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
VLICNPNAGYYESMVMAGDGSRNWVSFYKSAGCDVFMFNYRGYCRSGGRP
SPSKINKDVREVSQHYKLFFK*
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mRNA from alignment at H-elongata_contig63043:457..965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63043.13882.1 ID=mRNA_H-elongata_contig63043.13882.1|Name=mRNA_H-elongata_contig63043.13882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=509bp|location=Sequence derived from alignment at H-elongata_contig63043:457..965- (Himanthalia elongata Himel1 dioecious)
GTGCTCATCTGCAACCCCAACGCAGGGTACTACGAGAGTATGGTGATGGC GGGAGACGGCAGTCGTAACTGGTGAGAGTGCGGCCGTATAATTGACGTTT CGAGATGGAAAAGGAGGGGGGCAACGATCATGCGCAGGATGGGTAAAATA CAACACTGTAATGTAATACGTAATGTATCGCCGTGAGGCCAGCCTTTTTC GTTTTGTTTTGTTTTTTCCACAATATGTTTCGATACTTGACCCACTATTG CATCAATGGCGATCCATTTATGCATCGTGACTGCCCCTCATCCCCCCATC CCCCTCCTTACCTCTCGGTACTCCCTGTTCTGGAAAATTATGTTTTGTAT CTCCTCGATGACAGGGTATCGTTCTACAAGTCCGCGGGGTGCGATGTGTT CATGTTCAACTACCGCGGCTACTGTCGCTCTGGCGGGAGGCCTTCGCCAT CGAAGATCAACAAGGACGTGCGCGAAGTGAGTCAACATTATAAATTATTT TTTAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig63043:457..965-

>mRNA_H-elongata_contig63043.13882.1 ID=mRNA_H-elongata_contig63043.13882.1|Name=mRNA_H-elongata_contig63043.13882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig63043:457..965- (Himanthalia elongata Himel1 dioecious)
GTGCTCATCTGCAACCCCAACGCAGGGTACTACGAGAGTATGGTGATGGC
GGGAGACGGCAGTCGTAACTGGTGCTCATCTGCAACCCCAACGCAGGGTA
CTACGAGAGTATGGTGATGGCGGGAGACGGCAGTCGTAACTGGGTATCGT
TCTACAAGTCCGCGGGGTGCGATGTGTTCATGTTCAACTACCGCGGCTAC
TGTCGCTCTGGCGGGAGGCCTTCGCCATCGAAGATCAACAAGGACGTGCG
CGAAGTGAGTCAACATTATAAATTATTTTTTAAATAAGGTATCGTTCTAC
AAGTCCGCGGGGTGCGATGTGTTCATGTTCAACTACCGCGGCTACTGTCG
CTCTGGCGGGAGGCCTTCGCCATCGAAGATCAACAAGGACGTGCGCGAAG
TGAGTCAACATTATAAATTATTTTTTAAATAA
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