mRNA_H-elongata_contig63013.13879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63013.13879.1
Unique NamemRNA_H-elongata_contig63013.13879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.870e-36
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQV 243
            G+Y+MQ DLN+VFVGP FDFTTRYSYLLTLLF AM +SGGMF MN LSF F F+TYWVDK  +LR+YRRPPHREDALQ+QV
Sbjct:  420 GEYVMQGDLNEVFVGPVFDFTTRYSYLLTLLFTAMAYSGGMFAMNALSFAFFFITYWVDKAMLLRYYRRPPHREDALQQQV 500          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1CHI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHI6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.790e-13
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQVI 246
            G Y+ QSD+ND FVG  FD + RY  L+  LF  +++  GM  +  ++     + +W+DKI +LR+Y++PP  ++AL +Q I
Sbjct:   49 GSYLTQSDMNDAFVGAEFDLSIRYPELMNTLFTTLLYCAGMPYLLPMAVGSFVLRFWIDKILLLRYYKKPPAYDEALGKQAI 130          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7R9U1E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1E9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.930e-12
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   10 IMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPH 216
            + Q +LND F+GP FD + RY+ ++  +FV M++S GM ++N + F  + + YWVDK+  LR +R PP+
Sbjct:  249 LTQRELNDAFLGPDFDISLRYAQIIATIFVCMMYSAGMPMLNVICFLSMLIFYWVDKLMFLRLWRTPPY 317          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S3NH94_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3NH94_9SPIT)

HSP 1 Score: 66.2 bits (160), Expect = 5.760e-11
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQR 237
            + + Q D   +++GP +    RYS +LT++F+A++F  GM ++   +    FVTYWVDKI +LR YR+PP     L +
Sbjct:  118 RKLFQIDYETLYMGPEYMLEYRYSNMLTMIFIALMFGCGMPILYLFAALTFFVTYWVDKIALLRIYRKPPRYGSMLMK 195          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1CHA1_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHA1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.820e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQR 237
            + + QS L  +++GP F    RYS  +  ++VA  +S GM ++  L+  F FVT+WVDKI  +RFYRRPP  + ++ R
Sbjct:  975 RQVTQSHLEHLYLGPEFHLADRYSQAVMTIWVAFSYSAGMPLLLPLAACFFFVTFWVDKILFVRFYRRPPTYDASIAR 1052          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A1Y1HRS1_KLENI (RRM domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRS1_KLENI)

HSP 1 Score: 63.5 bits (153), Expect = 6.890e-10
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   10 IMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDAL 231
            ++QSDLN +  G  F    RY  LLTL+FVAMVFS G+ +++ +    + + YWVDKI +LR  R P   +D +
Sbjct:  638 LIQSDLNKLMEGLEFTLADRYGQLLTLIFVAMVFSAGIPILHLILTAAIHIIYWVDKITLLRLSRTPAQYDDTM 711          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1MA19_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MA19_ALECA)

HSP 1 Score: 60.1 bits (144), Expect = 6.150e-9
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPP 213
            K   Q++L +++  P FD +TRY+ L+  +FV +++S G+ ++N  +  ++F+ YWVDK  +LR  +RPP
Sbjct:    5 KGYAQTELLELYTNPVFDISTRYAQLVMTVFVTLMYSSGLPLLNLFAAAYMFMMYWVDKYVLLRASKRPP 74          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A1R2B7R1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B7R1_9CILI)

HSP 1 Score: 60.5 bits (145), Expect = 8.080e-9
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   16 QSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPP 213
            Q  LN  F GP FD +   S LL ++F + ++S G+  +N L    LFVTYW +KI +LR+YR PP
Sbjct:  247 QYKLNKFFRGPNFDISDSLSQLLAVIFTSYMYSAGIPFLNILCGMMLFVTYWTNKILLLRYYRTPP 312          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S3CVV1_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CVV1_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 8.360e-9
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQV 243
            GK   Q +LN +++GP F    R    L ++F A+++S G  +   +    LF+ YW+DKI +LRFYR+P    +++ R++
Sbjct:  710 GKAKTQEELNKLYLGPDFRIADRLGVNLMIVFAALLYSAGNALFYFIGALVLFLVYWIDKILVLRFYRKPRGFNESISRRL 790          
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1DZH8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DZH8_HEMAN)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-8
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   16 QSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQVI 246
            Q  LN  ++G  F  +TRY  LL  +F   +++ GM ++  +     FVTYW+DKI +LRF R PP   D L   ++
Sbjct:  494 QQALNIAYLGADFVLSTRYGMLLNTIFTCFMYASGMPILLFVGACICFVTYWIDKIQLLRFSRLPPQYSDKLAMYIL 570          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G1M6_ECTSI3.870e-3677.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CHI6_9STRA1.790e-1339.02Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9U1E9_9STRA1.930e-1242.03Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3NH94_9SPIT5.760e-1138.46Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A7S1CHA1_9STRA7.820e-1141.03Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A0A1Y1HRS1_KLENI6.890e-1043.24RRM domain-containing protein n=1 Tax=Klebsormidiu... [more]
A0A7S1MA19_ALECA6.150e-937.14Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A1R2B7R1_9CILI8.080e-945.45Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S3CVV1_9EUKA8.360e-934.57Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A7S1DZH8_HEMAN1.130e-837.66Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63013contigH-elongata_contig63013:762..1426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.2e-28
Seed eggNOG ortholog2880.D7G1M6
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
EggNOG OGs28SCF@1,2QZ1Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Hectar predicted targeting categorysignal anchor
Exons2
Model size246
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63013.13879.1prot_H-elongata_contig63013.13879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63013 762..1414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.8441606-CDS-H-elongata_contig63013:761..9441622931013.8441606-CDS-H-elongata_contig63013:761..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63013 762..944 -
1691679662.418464-CDS-H-elongata_contig63013:761..9441691679662.418464-CDS-H-elongata_contig63013:761..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63013 762..944 -
1622931013.8678846-CDS-H-elongata_contig63013:1363..14141622931013.8678846-CDS-H-elongata_contig63013:1363..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63013 1364..1414 -
1691679662.4353116-CDS-H-elongata_contig63013:1363..14141691679662.4353116-CDS-H-elongata_contig63013:1363..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63013 1364..1414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.8842087-UTR-H-elongata_contig63013:1414..14261622931013.8842087-UTR-H-elongata_contig63013:1414..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63013 1415..1426 -
1691679662.451939-UTR-H-elongata_contig63013:1414..14261691679662.451939-UTR-H-elongata_contig63013:1414..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63013 1415..1426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63013.13879.1

>prot_H-elongata_contig63013.13879.1 ID=prot_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFV
TYWVDKIGILRFYRRPPHREDALQRQVI
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mRNA from alignment at H-elongata_contig63013:762..1426-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63013.13879.1 ID=mRNA_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig63013:762..1426- (Himanthalia elongata Himel1 dioecious)
GGGAAGTATATCATGCAGAGCGACCTCAACGACGTGTTCGTGGGACCGAC CTTTGACTTTACGGTGCGGTGCGGTGCGGCATGTTATGATAGAGGTATTA TGTCTTGAATACGACAAATGGAAATGAGGCGTTGAATGATCATTGATCAT ATATGGTGGTTTGAATCTACTGAATGATAGCTAGGGCCCCTTACGGGGTG ATTTATGATGTATCCTGAGGGCGTAGCGCTACTCCTCTACACAAAGGACT CTACAACACCTCACGGCATCGTCCAAAATATTAAAAACCTACATATATTG TTTTATTTGCCTCGATCTTAGTCATCGGAATGCCCGCTTCACAATCAATC TTGACCTTCCCAGAGAACGTAGTCGGCGTTTCACATATTTTAAGGCCGCA GGTTCCCGTCGTCGTCTTTGAACTTATTCTCCTTCGGTTTCATTAAATTT GTTTACATGTTTTGTCCTCCACACTTCCACAGACGCGCTATTCCTACCTT CTGACGCTGCTCTTTGTGGCCATGGTATTTTCTGGGGGAATGTTCGTCAT GAACGGGCTCTCGTTCTTCTTCTTGTTCGTGACTTATTGGGTCGATAAAA TAGGCATCTTAAGGTTCTACAGAAGACCGCCCCATCGCGAGGACGCTCTG CAACGGCAGGTGATC
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Coding sequence (CDS) from alignment at H-elongata_contig63013:762..1426-

>mRNA_H-elongata_contig63013.13879.1 ID=mRNA_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig63013:762..1426- (Himanthalia elongata Himel1 dioecious)
ATGCAGAGCGACCTCAACGACGTGTTCGTGGGACCGACCTTTGACTTTAC
GATGCAGAGCGACCTCAACGACGTGTTCGTGGGACCGACCTTTGACTTTA
CGACGCGCTATTCCTACCTTCTGACGCTGCTCTTTGTGGCCATGGTATTT
TCTGGGGGAATGTTCGTCATGAACGGGCTCTCGTTCTTCTTCTTGTTCGT
GACTTATTGGGTCGATAAAATAGGCATCTTAAGGTTCTACAGAAGACCGC
CCCATCGCGAGGACGCTCTGCAACGGCAGGTGATCACGCGCTATTCCTAC
CTTCTGACGCTGCTCTTTGTGGCCATGGTATTTTCTGGGGGAATGTTCGT
CATGAACGGGCTCTCGTTCTTCTTCTTGTTCGTGACTTATTGGGTCGATA
AAATAGGCATCTTAAGGTTCTACAGAAGACCGCCCCATCGCGAGGACGCT
CTGCAACGGCAGGTGATC
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