mRNA_H-elongata_contig63013.13879.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI) HSP 1 Score: 138 bits (347), Expect = 3.870e-36 Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query: 1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQV 243
G+Y+MQ DLN+VFVGP FDFTTRYSYLLTLLF AM +SGGMF MN LSF F F+TYWVDK +LR+YRRPPHREDALQ+QV
Sbjct: 420 GEYVMQGDLNEVFVGPVFDFTTRYSYLLTLLFTAMAYSGGMFAMNALSFAFFFITYWVDKAMLLRYYRRPPHREDALQQQV 500
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1CHI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHI6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.790e-13 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQVI 246
G Y+ QSD+ND FVG FD + RY L+ LF +++ GM + ++ + +W+DKI +LR+Y++PP ++AL +Q I
Sbjct: 49 GSYLTQSDMNDAFVGAEFDLSIRYPELMNTLFTTLLYCAGMPYLLPMAVGSFVLRFWIDKILLLRYYKKPPAYDEALGKQAI 130
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7R9U1E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1E9_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.930e-12 Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 10 IMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPH 216
+ Q +LND F+GP FD + RY+ ++ +FV M++S GM ++N + F + + YWVDK+ LR +R PP+
Sbjct: 249 LTQRELNDAFLGPDFDISLRYAQIIATIFVCMMYSAGMPMLNVICFLSMLIFYWVDKLMFLRLWRTPPY 317
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S3NH94_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3NH94_9SPIT) HSP 1 Score: 66.2 bits (160), Expect = 5.760e-11 Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQR 237
+ + Q D +++GP + RYS +LT++F+A++F GM ++ + FVTYWVDKI +LR YR+PP L +
Sbjct: 118 RKLFQIDYETLYMGPEYMLEYRYSNMLTMIFIALMFGCGMPILYLFAALTFFVTYWVDKIALLRIYRKPPRYGSMLMK 195
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1CHA1_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHA1_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.820e-11 Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQR 237
+ + QS L +++GP F RYS + ++VA +S GM ++ L+ F FVT+WVDKI +RFYRRPP + ++ R
Sbjct: 975 RQVTQSHLEHLYLGPEFHLADRYSQAVMTIWVAFSYSAGMPLLLPLAACFFFVTFWVDKILFVRFYRRPPTYDASIAR 1052
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A1Y1HRS1_KLENI (RRM domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRS1_KLENI) HSP 1 Score: 63.5 bits (153), Expect = 6.890e-10 Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 10 IMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDAL 231
++QSDLN + G F RY LLTL+FVAMVFS G+ +++ + + + YWVDKI +LR R P +D +
Sbjct: 638 LIQSDLNKLMEGLEFTLADRYGQLLTLIFVAMVFSAGIPILHLILTAAIHIIYWVDKITLLRLSRTPAQYDDTM 711
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1MA19_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MA19_ALECA) HSP 1 Score: 60.1 bits (144), Expect = 6.150e-9 Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 4 KYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPP 213
K Q++L +++ P FD +TRY+ L+ +FV +++S G+ ++N + ++F+ YWVDK +LR +RPP
Sbjct: 5 KGYAQTELLELYTNPVFDISTRYAQLVMTVFVTLMYSSGLPLLNLFAAAYMFMMYWVDKYVLLRASKRPP 74
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A1R2B7R1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B7R1_9CILI) HSP 1 Score: 60.5 bits (145), Expect = 8.080e-9 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 16 QSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPP 213
Q LN F GP FD + S LL ++F + ++S G+ +N L LFVTYW +KI +LR+YR PP
Sbjct: 247 QYKLNKFFRGPNFDISDSLSQLLAVIFTSYMYSAGIPFLNILCGMMLFVTYWTNKILLLRYYRTPP 312
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S3CVV1_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CVV1_9EUKA) HSP 1 Score: 60.5 bits (145), Expect = 8.360e-9 Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 1 GKYIMQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQV 243
GK Q +LN +++GP F R L ++F A+++S G + + LF+ YW+DKI +LRFYR+P +++ R++
Sbjct: 710 GKAKTQEELNKLYLGPDFRIADRLGVNLMIVFAALLYSAGNALFYFIGALVLFLVYWIDKILVLRFYRKPRGFNESISRRL 790
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Match: A0A7S1DZH8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DZH8_HEMAN) HSP 1 Score: 60.1 bits (144), Expect = 1.130e-8 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 16 QSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVTYWVDKIGILRFYRRPPHREDALQRQVI 246
Q LN ++G F +TRY LL +F +++ GM ++ + FVTYW+DKI +LRF R PP D L ++
Sbjct: 494 QQALNIAYLGADFVLSTRYGMLLNTIFTCFMYASGMPILLFVGACICFVTYWIDKIQLLRFSRLPPQYSDKLAMYIL 570 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63013.13879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63013.13879.1 >prot_H-elongata_contig63013.13879.1 ID=prot_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MQSDLNDVFVGPTFDFTTRYSYLLTLLFVAMVFSGGMFVMNGLSFFFLFVback to top mRNA from alignment at H-elongata_contig63013:762..1426- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63013.13879.1 ID=mRNA_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig63013:762..1426- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63013:762..1426- >mRNA_H-elongata_contig63013.13879.1 ID=mRNA_H-elongata_contig63013.13879.1|Name=mRNA_H-elongata_contig63013.13879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig63013:762..1426- (Himanthalia elongata Himel1 dioecious)back to top |