mRNA_H-elongata_contig62951.13873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62951.13873.1
Unique NamemRNA_H-elongata_contig62951.13873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62951.13873.1 vs. uniprot
Match: D7FS78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS78_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.160e-27
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   19 LGQFLSALIATMSISAASLDDRGVNLPSLLNCMSYAMLMLVFFIPTVIS--RGTLKLSLPAWRYAVYSLIDVEANTLAVWAYRYTTITS 279
            LGQ LS LIA MSISAASLDDRG+++PS +N ++Y+ +M +FF P + S  +G+L+L+LP WRYA Y+L+DVEANTLAV AYRYT+ITS
Sbjct:   59 LGQILSLLIAMMSISAASLDDRGISIPSFVNFVNYSFIMALFFFPMLFSWFQGSLQLTLPWWRYAFYALVDVEANTLAVLAYRYTSITS 147
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BLAST of mRNA_H-elongata_contig62951.13873.1 vs. uniprot
Match: A0A836CB98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB98_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   10 SIGLGQFLSALIATMSISAASLDDRGVNLPSLLNCMSYAMLMLVFFIPTVISRGTLKLSLPAWRYAVYSLIDVEANTLAV 249
            ++ LGQ +S  I+  SI+AASL DRG+N P  ++ + Y  L         + R    L LP WRYAVY+L+DVEAN L V
Sbjct:   32 NLALGQVISFFISGASIAAASLSDRGMNFPVFMSFIVYLCLC------GYLVRVRRPLRLPVWRYAVYALMDVEANFLVV 105
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BLAST of mRNA_H-elongata_contig62951.13873.1 vs. uniprot
Match: UPI001B88B024 (solute carrier family 35 member F1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B024)

HSP 1 Score: 59.3 bits (142), Expect = 2.900e-8
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    1 FWGSIGLGQFLSALIATMSISAASLDDRGVNLPSLLNCMSYAMLMLVFFIPTVISRGTLK-------LSLPAWRYAVYSLIDVEANTLAVWAYRYTTITS 279
            F  ++ LGQFLS L+    I    L   GV+ P+  + ++Y +L LVF   TVI     K       L    W+Y + SL+DVEAN LA+ AY YTT+TS
Sbjct:   46 FLKALLLGQFLSLLLCGTGIFTGLLAQEGVHTPAAQSFVNYVLLCLVF---TVILACRYKERTFGFLLKNYWWKYLLLSLVDVEANYLAIKAYSYTTVTS 142
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BLAST of mRNA_H-elongata_contig62951.13873.1 vs. uniprot
Match: A0A7S3K4V2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4V2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.520e-8
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   19 LGQFLSALIATMSISAASLDDRGVNLPSLLNCMSYAMLMLVFFIPTVISRGTLKLSLPAWRYAVYSLIDVEANTLAVWAYRYTTITS 279
            LGQF +   A    +A++L  RG+N+P+L N  SYA+L  +F +     +         +++   +LIDVEAN LAVWAY +T++TS
Sbjct:   18 LGQFAAICTAATGAAASTLARRGINVPTLQNMPSYALLSTLFLLQKDKEKPD-----HWYKWFFLALIDVEANCLAVWAYSHTSLTS 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62951.13873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS78_ECTSI3.160e-2764.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CB98_9STRA1.300e-945.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001B88B0242.900e-841.00solute carrier family 35 member F1-like n=1 Tax=Gi... [more]
A0A7S3K4V2_9STRA5.520e-839.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62951contigH-elongata_contig62951:1101..1943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FS78
KEGG koko:K15287
EggNOG free text desc.transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG2766@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.1001441-CDS-H-elongata_contig62951:1100..11601622931013.1001441-CDS-H-elongata_contig62951:1100..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62951 1101..1160 -
1691679662.1224532-CDS-H-elongata_contig62951:1100..11601691679662.1224532-CDS-H-elongata_contig62951:1100..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62951 1101..1160 -
1622931013.1178474-CDS-H-elongata_contig62951:1724..19431622931013.1178474-CDS-H-elongata_contig62951:1724..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62951 1725..1943 -
1691679662.1354373-CDS-H-elongata_contig62951:1724..19431691679662.1354373-CDS-H-elongata_contig62951:1724..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62951 1725..1943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62951.13873.1prot_H-elongata_contig62951.13873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62951 1101..1943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62951.13873.1

>prot_H-elongata_contig62951.13873.1 ID=prot_H-elongata_contig62951.13873.1|Name=mRNA_H-elongata_contig62951.13873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
FWGSIGLGQFLSALIATMSISAASLDDRGVNLPSLLNCMSYAMLMLVFFI
PTVISRGTLKLSLPAWRYAVYSLIDVEANTLAVWAYRYTTITS
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mRNA from alignment at H-elongata_contig62951:1101..1943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62951.13873.1 ID=mRNA_H-elongata_contig62951.13873.1|Name=mRNA_H-elongata_contig62951.13873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig62951:1101..1943- (Himanthalia elongata Himel1 dioecious)
TTCTGGGGGAGCATCGGGCTGGGTCAGTTCCTGTCCGCGCTTATCGCGAC
CATGTCGATTAGCGCCGCTAGTCTGGACGACAGAGGGGTGAACTTGCCCT
CCTTATTGAACTGCATGAGCTACGCCATGCTCATGCTAGTCTTCTTCATC
CCAACAGTTATTTCCCGGGGCACCTTGAAGCTATCCCTCCCTGCATGGCG
ATACGCCGTCTATTCTCTGGTAAGAACTCGCCTCAGGCGTGCTGGTCTTG
CCCTAGAGTTTGGAGGTGTCCCGTGCGACACATAGCGACCGCTCAACCGA
CTCCTTTTCTGTGATCCACTCTCTTTTTCTTTACAGTAGATTGTCGTGAG
ATAAAATCACCGACGAACGAGCGGCTCTGTGTACCACGACCTTCTTAATC
TTGGTTGCTGACTTTCTGCCACTGGTAAGCTCGTCGTCCATTGGACAGTC
GCCGAGCAGGAGATGACTGCATGTGCCATGCGATTGCTCTGGTTCACGCC
GAGCGCTGTGTCGACCCCCCGCCTCGAGCTTGATCCTCGACTGCAGAAAA
GGGAAATATTGTTATTTGTTAACCAGTGTGGCGCCCCCTTCACGTGCCAT
GTGGGTTTGCGCAATCTAAATCGCAATTTGTTTTTTTTTTAAATATTTTT
AAAAAGCGAGGCATGCCAAATTGCTGCCCGTTTGCTCCATGTCTTGCTGT
TTCAAGCTCACTATTATAGAGCTACTAGTCATAATAATGTTCAGAAGCTT
ACAATTGCATTCTTCCAACAAAACCTGTCTCAGATTGACGTTGAGGCGAA
CACCCTGGCGGTATGGGCCTACCGTTACACGACTATCACCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig62951:1101..1943-

>mRNA_H-elongata_contig62951.13873.1 ID=mRNA_H-elongata_contig62951.13873.1|Name=mRNA_H-elongata_contig62951.13873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig62951:1101..1943- (Himanthalia elongata Himel1 dioecious)
TTCTGGGGGAGCATCGGGCTGGGTCAGTTCCTGTCCGCGCTTATCGCGAC
CATGTCGATTAGCGCCGCTAGTCTGGACGACAGAGGGGTGAACTTGCCCT
CCTTATTGAACTGCATGAGCTACGCCATGCTCATGCTAGTCTTCTTCATC
CCAACAGTTATTTCCCGGGGCACCTTGAAGCTATCCCTCCCTGCATGGCG
ATACGCCGTCTATTCTCTGTTCTGGGGGAGCATCGGGCTGGGTCAGTTCC
TGTCCGCGCTTATCGCGACCATGTCGATTAGCGCCGCTAGTCTGGACGAC
AGAGGGGTGAACTTGCCCTCCTTATTGAACTGCATGAGCTACGCCATGCT
CATGCTAGTCTTCTTCATCCCAACAGTTATTTCCCGGGGCACCTTGAAGC
TATCCCTCCCTGCATGGCGATACGCCGTCTATTCTCTGATTGACGTTGAG
GCGAACACCCTGGCGGTATGGGCCTACCGTTACACGACTATCACCAGCAT
TGACGTTGAGGCGAACACCCTGGCGGTATGGGCCTACCGTTACACGACTA
TCACCAGC
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