mRNA_H-elongata_contig62837.13860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62837.13860.1
Unique NamemRNA_H-elongata_contig62837.13860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.550e-28
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPMH 177
            VLGCPHYRRACK+RAPCCQ+LFTCRLCHDQ SDHKVDR+EV EMLCMRC TLQP++
Sbjct:  838 VLGCPHYRRACKIRAPCCQKLFTCRLCHDQVSDHKVDREEVTEMLCMRCETLQPIN 893          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.270e-22
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            +LGCPHY+R  K+RAPCC RLFTCRLCHDQ  DH +DR  V EMLCM CG LQP+
Sbjct:    1 MLGCPHYQRRTKLRAPCCGRLFTCRLCHDQVMDHTMDRYRVVEMLCMVCGALQPI 55          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   13 LGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            LGCPHY+R  K+RAPCC +L TCRLCHDQA DH ++R  V+EMLCM CGTLQP+
Sbjct:  531 LGCPHYKRKVKLRAPCCDKLVTCRLCHDQACDHMMNRFAVEEMLCMVCGTLQPV 584          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: G7L9R6_MEDTR (CHY zinc finger protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7L9R6_MEDTR)

HSP 1 Score: 92.0 bits (227), Expect = 2.730e-20
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 GEIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            GE+V GC HY+R CK+RA CC +LFTCR CHD  SDH +DR    EM+CMRC  +QP+
Sbjct:  993 GELVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPI 1050          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A068RF09_9FUNG (Chy and ring finger domain n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RF09_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 2.150e-19
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    4 EIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQP 171
            E +LGC HY+R  K++A CC RLFTCR CHD+ASDH +DR   K M+CM C TLQP
Sbjct:  110 ETILGCTHYQRKVKLQAECCGRLFTCRFCHDEASDHMIDRHTTKNMMCMLCKTLQP 165          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: D8TUF3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUF3_VOLCA)

HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            +LGC HY+R C++ APCC ++FTCRLCHD ASDH++DR  V EM CM CGT QP+
Sbjct:  967 ILGCQHYQRKCQLVAPCCGKIFTCRLCHDAASDHRMDRYAVTEMRCMMCGTRQPV 1021          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A7J7PIT3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIT3_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            VLGC HYRR+ ++ APCC +++TCRLCHD+ASDH++DR  V EM+CM CGT QP+
Sbjct:  981 VLGCKHYRRSAQLVAPCCGKVYTCRLCHDEASDHRLDRCAVSEMVCMLCGTRQPV 1035          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A835XVX6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVX6_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            VLGC HY+R C++ APCC ++FTCRLCHD+ASDH++DR  V EM CM CG  QP+
Sbjct: 1320 VLGCQHYQRRCQLVAPCCDKIFTCRLCHDEASDHRMDRYAVSEMRCMLCGERQPV 1374          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: UPI000C9D812A (zinc finger protein BRUTUS-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D812A)

HSP 1 Score: 83.6 bits (205), Expect = 2.930e-19
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            V GC HY+R CK+ A CC +LFTCR CHD  SDH +DR    EM+CM C T+QP+
Sbjct:   40 VFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPV 94          
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: V7C7K5_PHAVU (Uncharacterized protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C7K5_PHAVU)

HSP 1 Score: 89.0 bits (219), Expect = 3.270e-19
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
            + GC HY+R CK+RA CC +LFTCR CHD ASDH +DR    EM+CMRC T+QP+
Sbjct:  380 IFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMRCLTIQPV 434          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L587_9PHAE1.550e-2885.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9Z4_9STRA7.270e-2270.91Zinc ion binding protein n=1 Tax=Tribonema minus T... [more]
A0A7S1XWB5_9STRA1.460e-2070.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
G7L9R6_MEDTR2.730e-2060.34CHY zinc finger protein n=6 Tax=Trifolieae TaxID=1... [more]
A0A068RF09_9FUNG2.150e-1962.50Chy and ring finger domain n=1 Tax=Lichtheimia cor... [more]
D8TUF3_VOLCA2.420e-1963.64Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A7J7PIT3_9CHLO2.420e-1963.64Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A835XVX6_9CHLO2.420e-1963.64Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI000C9D812A2.930e-1958.18zinc finger protein BRUTUS-like n=1 Tax=Cucurbita ... [more]
V7C7K5_PHAVU3.270e-1961.82Uncharacterized protein n=1 Tax=Phaseolus vulgaris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62837contigH-elongata_contig62837:160..342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.2e-23
Seed eggNOG ortholog2880.D7FUX1
KEGG koko:K16276
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.709913-CDS-H-elongata_contig62837:159..3421622931011.709913-CDS-H-elongata_contig62837:159..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62837 160..342 -
1691679661.6041324-CDS-H-elongata_contig62837:159..3421691679661.6041324-CDS-H-elongata_contig62837:159..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62837 160..342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62837.13860.1prot_H-elongata_contig62837.13860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62837 160..342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62837.13860.1

>prot_H-elongata_contig62837.13860.1 ID=prot_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
GEIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCM
RCGTLQPMHR*
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mRNA from alignment at H-elongata_contig62837:160..342-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62837.13860.1 ID=mRNA_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig62837:160..342- (Himanthalia elongata Himel1 dioecious)
GGCGAGATCGTCCTTGGGTGCCCACACTATCGGCGGGCCTGCAAGATGCG CGCCCCGTGCTGCCAACGGCTGTTCACGTGCCGGCTGTGCCACGATCAGG CGTCGGATCACAAGGTCGACCGAGATGAGGTAAAGGAGATGCTGTGCATG CGGTGCGGGACCCTGCAGCCGATGCACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62837:160..342-

>mRNA_H-elongata_contig62837.13860.1 ID=mRNA_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig62837:160..342- (Himanthalia elongata Himel1 dioecious)
GGCGAGATCGTCCTTGGGTGCCCACACTATCGGCGGGCCTGCAAGATGCG
CGCCCCGTGCTGCCAACGGCTGTTCACGTGCCGGCTGTGCCACGATCAGG
CGTCGGATCACAAGGTCGACCGAGATGAGGTAAAGGAGATGCTGTGCATG
CGGTGCGGGACCCTGCAGCCGATGCACAGGTGAGGCGAGATCGTCCTTGG
GTGCCCACACTATCGGCGGGCCTGCAAGATGCGCGCCCCGTGCTGCCAAC
GGCTGTTCACGTGCCGGCTGTGCCACGATCAGGCGTCGGATCACAAGGTC
GACCGAGATGAGGTAAAGGAGATGCTGTGCATGCGGTGCGGGACCCTGCA
GCCGATGCACAGGTGA
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