mRNA_H-elongata_contig62837.13860.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.550e-28 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPMH 177
VLGCPHYRRACK+RAPCCQ+LFTCRLCHDQ SDHKVDR+EV EMLCMRC TLQP++
Sbjct: 838 VLGCPHYRRACKIRAPCCQKLFTCRLCHDQVSDHKVDREEVTEMLCMRCETLQPIN 893
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 7.270e-22 Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
+LGCPHY+R K+RAPCC RLFTCRLCHDQ DH +DR V EMLCM CG LQP+
Sbjct: 1 MLGCPHYQRRTKLRAPCCGRLFTCRLCHDQVMDHTMDRYRVVEMLCMVCGALQPI 55
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20 Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 13 LGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
LGCPHY+R K+RAPCC +L TCRLCHDQA DH ++R V+EMLCM CGTLQP+
Sbjct: 531 LGCPHYKRKVKLRAPCCDKLVTCRLCHDQACDHMMNRFAVEEMLCMVCGTLQPV 584
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: G7L9R6_MEDTR (CHY zinc finger protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7L9R6_MEDTR) HSP 1 Score: 92.0 bits (227), Expect = 2.730e-20 Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 1 GEIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
GE+V GC HY+R CK+RA CC +LFTCR CHD SDH +DR EM+CMRC +QP+
Sbjct: 993 GELVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPI 1050
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A068RF09_9FUNG (Chy and ring finger domain n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RF09_9FUNG) HSP 1 Score: 88.6 bits (218), Expect = 2.150e-19 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 4 EIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQP 171
E +LGC HY+R K++A CC RLFTCR CHD+ASDH +DR K M+CM C TLQP
Sbjct: 110 ETILGCTHYQRKVKLQAECCGRLFTCRFCHDEASDHMIDRHTTKNMMCMLCKTLQP 165
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: D8TUF3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUF3_VOLCA) HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
+LGC HY+R C++ APCC ++FTCRLCHD ASDH++DR V EM CM CGT QP+
Sbjct: 967 ILGCQHYQRKCQLVAPCCGKIFTCRLCHDAASDHRMDRYAVTEMRCMMCGTRQPV 1021
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A7J7PIT3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIT3_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19 Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
VLGC HYRR+ ++ APCC +++TCRLCHD+ASDH++DR V EM+CM CGT QP+
Sbjct: 981 VLGCKHYRRSAQLVAPCCGKVYTCRLCHDEASDHRLDRCAVSEMVCMLCGTRQPV 1035
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: A0A835XVX6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVX6_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 2.420e-19 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
VLGC HY+R C++ APCC ++FTCRLCHD+ASDH++DR V EM CM CG QP+
Sbjct: 1320 VLGCQHYQRRCQLVAPCCDKIFTCRLCHDEASDHRMDRYAVSEMRCMLCGERQPV 1374
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: UPI000C9D812A (zinc finger protein BRUTUS-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D812A) HSP 1 Score: 83.6 bits (205), Expect = 2.930e-19 Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
V GC HY+R CK+ A CC +LFTCR CHD SDH +DR EM+CM C T+QP+
Sbjct: 40 VFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPV 94
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Match: V7C7K5_PHAVU (Uncharacterized protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C7K5_PHAVU) HSP 1 Score: 89.0 bits (219), Expect = 3.270e-19 Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 10 VLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMRCGTLQPM 174
+ GC HY+R CK+RA CC +LFTCR CHD ASDH +DR EM+CMRC T+QP+
Sbjct: 380 IFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMRCLTIQPV 434 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62837.13860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62837.13860.1 >prot_H-elongata_contig62837.13860.1 ID=prot_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp GEIVLGCPHYRRACKMRAPCCQRLFTCRLCHDQASDHKVDRDEVKEMLCMback to top mRNA from alignment at H-elongata_contig62837:160..342- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62837.13860.1 ID=mRNA_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig62837:160..342- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62837:160..342- >mRNA_H-elongata_contig62837.13860.1 ID=mRNA_H-elongata_contig62837.13860.1|Name=mRNA_H-elongata_contig62837.13860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig62837:160..342- (Himanthalia elongata Himel1 dioecious)back to top |