mRNA_H-elongata_contig6189.13750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6189.13750.1
Unique NamemRNA_H-elongata_contig6189.13750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 8.840e-46
Identity = 95/248 (38.31%), Postives = 135/248 (54.44%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQ 741
            +HVDD+   G     + +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +GSL W+   T P I+NA+R V R  H+P + +W+A +KI+ YL +T  L   F  ++  D    VYVD D+A+K ND RSVS  +V+V    V   S TQ  V+    EAEY AM  G K ALF   ++ FL+P      ID++EDN+
Sbjct:   12 IHVDDILYTGTKSLAEVVVAALADSLPTKNLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNE 259          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.660e-45
Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +GSL W+   T P I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F  ++  D    VYVD D+A+K ND RSVS  +V+V    V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P      ID++EDN+G
Sbjct:  643 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 891          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.970e-45
Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +GSL W+   T P I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F  ++  D    VYVD D+A+K ND RSVS  +V+V    V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P      ID++EDN+G
Sbjct:  910 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 1158          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 7.710e-44
Identity = 100/249 (40.16%), Postives = 141/249 (56.63%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +GSL W+   T P I+NAVR VAR  H+P++ +W+A +KI+ YL +T  L   + ++   D    VYVD D+A++  D RS S  +V+V D +V   S TQ  VTL T EAEYVAM  G K ALF K ++ FL+P      I + EDN+G
Sbjct:  344 IHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEG 592          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.480e-44
Identity = 99/249 (39.76%), Postives = 137/249 (55.02%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+   G       +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +GSL W+   T P I+NAVR VAR  H+P + + +A +KI+ YL +   L   + ++   D    VYVD D+A+K  D RSVS  +V+V D +V   S TQ  VTL T EAEYVAM  G K ALF K ++ FL+P      I + EDN+G
Sbjct:   59 IHVDDILYEGIERLAKMVVEALGDSLPTKNLGEIRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEG 307          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 8.700e-44
Identity = 97/249 (38.96%), Postives = 139/249 (55.82%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +G L W+   T P  +NAVRTVAR  H+P +  W+A +KI++YL +T  L   + ++   D    VYVD D+A+K  D RSVS  +V+V   +V+  S TQ  V+L T EAEY+AM  G K ALF   ++  L+P      ID+ EDN+G
Sbjct:  408 IHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEG 656          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.180e-43
Identity = 99/250 (39.60%), Postives = 139/250 (55.60%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKN---DDQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG       +   L     T   GE+ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +G L W+   T P I+NAVR VAR  H+P +R W+A +KI+ YL  T  L   + ++   DD    VYVD D+A+K  D RSVS  +VIV   +V   S TQ  V+  T EAEY+AM  G K +LF   ++ FL+P +    ID++EDN+G
Sbjct:  975 IHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEG 1224          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.340e-42
Identity = 96/249 (38.55%), Postives = 138/249 (55.42%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGC + RDRK   + +SQ ++I S + R+     S +PAS + +  S   +E     P R  +GSL W+   T   I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F ++   D    VYVD D+A+K  D RSVS  +V V   +V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P +    ID++EDN+G
Sbjct: 1084 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 1332          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.170e-42
Identity = 95/249 (38.15%), Postives = 139/249 (55.82%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   G++ +FLGCAF RDR+   + +SQ ++I S + R+     S +PAS + +  S   DE     P R  +G L W+   T P  +NAVRTVAR  H+P +  W+A ++I++ L +T  L   + ++   D    VYVD D+A+K  D RSVS  +V+V   +V+  S TQ  V+L T EAEY+AM  G K ALF   ++ FL+P      ID+ EDN+G
Sbjct:  963 IHVDDILYAGTKRLAEVIVEALGDSLPTKNLGKVIFFLGCAFSRDREAGTIEISQESYIRSVLERFNISRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQRILSNLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEG 1211          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 5.670e-42
Identity = 95/249 (38.15%), Postives = 138/249 (55.42%), Query Frame = 1
Query:    7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
            +HVDD+  AG     + +   L     T   GE+ +FLGC + RDRK   + +SQ ++I S + R+     S +PAS + +  S   +E     P R  +GSL W+   T   I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F ++   D    VYVD D+A+K  D RSVS  +V V   +V   S TQ  V+  T E+EY+AM  G K ALF   ++ FL+P +    ID++EDN+G
Sbjct:  874 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 1122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBM6_9PHAE8.840e-4638.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.660e-4540.16Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.970e-4540.16Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KN43_9PHAE7.710e-4440.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGA6_9PHAE8.480e-4439.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE8.700e-4438.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE5.180e-4339.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZH7_9PHAE2.340e-4238.55Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.170e-4238.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE5.670e-4238.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6189contigH-elongata_contig6189:3104..4008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog7029.ACYPI066108-PA
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs396RY@33154,3C358@33208,3DI66@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size905
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6189.13750.1prot_H-elongata_contig6189.13750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6189 3247..3681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.581514-UTR-H-elongata_contig6189:3103..32461622930998.581514-UTR-H-elongata_contig6189:3103..3246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6189 3104..3246 -
1691679656.2400162-UTR-H-elongata_contig6189:3103..32461691679656.2400162-UTR-H-elongata_contig6189:3103..3246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6189 3104..3246 -
1622930998.6163473-UTR-H-elongata_contig6189:3681..40081622930998.6163473-UTR-H-elongata_contig6189:3681..4008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6189 3682..4008 -
1691679656.2659016-UTR-H-elongata_contig6189:3681..40081691679656.2659016-UTR-H-elongata_contig6189:3681..4008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6189 3682..4008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.5970294-CDS-H-elongata_contig6189:3246..36811622930998.5970294-CDS-H-elongata_contig6189:3246..3681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6189 3247..3681 -
1691679656.2493396-CDS-H-elongata_contig6189:3246..36811691679656.2493396-CDS-H-elongata_contig6189:3246..3681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6189 3247..3681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6189.13750.1

>prot_H-elongata_contig6189.13750.1 ID=prot_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKNDD
QHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEA
EYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQGTDKAH*
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mRNA from alignment at H-elongata_contig6189:3104..4008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6189.13750.1 ID=mRNA_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig6189:3104..4008- (Himanthalia elongata Himel1 dioecious)
TTGTTTGTTCATGTGGATGATGTTACTGTTGCAGGGGAGCCTGGTGCGTA CGATTTTCTGAGCACCCGTCTTCTTGGGAAGTTCCAGACTACGAGAGGGG AACTCTCGTGGTTCCTAGGGTGCGCATTTGAGCGTGATAGGAAATACGAC GCTCTTCGTGTGTCACAGAGAGCGTTTATCGAGTCTGCTGTGAGTAGATA TGGAGCTGATGCAATCTCTGATCTCCCGGCTTCTCAATCAGGAAACCTCG GGTCTAGGAGAAATGATGAGCCAGTCTGTAAAAATCCGGTTCGTGCGGCT CTCGGGAGTTTGAGTTGGTTGGGTGGTATGACTGGGCCAGGCATTGCTAA TGCAGTTAGAACAGTAGCACGTCAAGTCCACGATCCTGATGAGAGGTACT GGCGAGCTGTTAGGAAGATAATCACGTACCTCAATAAGACGAAAGACCTG GGGTTTGTGTTCGCAAAAAATGACGACCAACATCTCTCCGTGTATGTAGA CGTGGATTACGCCAATAAGGATAATGATCTACGTTCAGTGTCTAGAGTGG TGGTGATAGTAGGGGACACAGTTGTGAATGCTAGTAGTACTACGCAGCAC TATGTTACGCTTTTTACTTGTGAGGCAGAATACGTAGCCATGGCGCAAGG GGCGAAGGCCGCGTTGTTCACAAAGGCCGTAATGGGTTTCTTGCAGCCAA AGATCGTCAATGAGACTATTGACTTGGTTGAAGACAATCAGGGGACGGAC AAAGCACATTGATGTTCGTTATCATTTTATGAGGGAGCTGGTACTTAAGG TTCTTCGTCCTTCGTATCCCGTACACGGAGTCTAGCAATCAACATGTGGA CATTCTGACGAAGCCGCTTGGACTTGAGGCTTTCGCTAGATACCGTTCGT TTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig6189:3104..4008-

>mRNA_H-elongata_contig6189.13750.1 ID=mRNA_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig6189:3104..4008- (Himanthalia elongata Himel1 dioecious)
ATGACTGGGCCAGGCATTGCTAATGCAGTTAGAACAGTAGCACGTCAAGT
CCACGATCCTGATGAGAGGTACTGGCGAGCTGTTAGGAAGATAATCACGT
ACCTCAATAAGACGAAAGACCTGGGGTTTGTGTTCGCAAAAAATGACGAC
CAACATCTCTCCGTGTATGTAGACGTGGATTACGCCAATAAGGATAATGA
TCTACGTTCAGTGTCTAGAGTGGTGGTGATAGTAGGGGACACAGTTGTGA
ATGCTAGTAGTACTACGCAGCACTATGTTACGCTTTTTACTTGTGAGGCA
GAATACGTAGCCATGGCGCAAGGGGCGAAGGCCGCGTTGTTCACAAAGGC
CGTAATGGGTTTCTTGCAGCCAAAGATCGTCAATGAGACTATTGACTTGG
TTGAAGACAATCAGGGGACGGACAAAGCACATTGAATGACTGGGCCAGGC
ATTGCTAATGCAGTTAGAACAGTAGCACGTCAAGTCCACGATCCTGATGA
GAGGTACTGGCGAGCTGTTAGGAAGATAATCACGTACCTCAATAAGACGA
AAGACCTGGGGTTTGTGTTCGCAAAAAATGACGACCAACATCTCTCCGTG
TATGTAGACGTGGATTACGCCAATAAGGATAATGATCTACGTTCAGTGTC
TAGAGTGGTGGTGATAGTAGGGGACACAGTTGTGAATGCTAGTAGTACTA
CGCAGCACTATGTTACGCTTTTTACTTGTGAGGCAGAATACGTAGCCATG
GCGCAAGGGGCGAAGGCCGCGTTGTTCACAAAGGCCGTAATGGGTTTCTT
GCAGCCAAAGATCGTCAATGAGACTATTGACTTGGTTGAAGACAATCAGG
GGACGGACAAAGCACATTGA
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