mRNA_H-elongata_contig6189.13750.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 166 bits (421), Expect = 8.840e-46 Identity = 95/248 (38.31%), Postives = 135/248 (54.44%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQ 741
+HVDD+ G + + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +GSL W+ T P I+NA+R V R H+P + +W+A +KI+ YL +T L F ++ D VYVD D+A+K ND RSVS +V+V V S TQ V+ EAEY AM G K ALF ++ FL+P ID++EDN+
Sbjct: 12 IHVDDILYTGTKSLAEVVVAALADSLPTKNLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNE 259
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.660e-45 Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +GSL W+ T P I+NAVR VAR H+P + +W+A +KI+ YL +T L F ++ D VYVD D+A+K ND RSVS +V+V V S TQ V+ T EAEY+AM G K ALF ++ FL+P ID++EDN+G
Sbjct: 643 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 891
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.970e-45 Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +GSL W+ T P I+NAVR VAR H+P + +W+A +KI+ YL +T L F ++ D VYVD D+A+K ND RSVS +V+V V S TQ V+ T EAEY+AM G K ALF ++ FL+P ID++EDN+G
Sbjct: 910 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 1158
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 168 bits (425), Expect = 7.710e-44 Identity = 100/249 (40.16%), Postives = 141/249 (56.63%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +GSL W+ T P I+NAVR VAR H+P++ +W+A +KI+ YL +T L + ++ D VYVD D+A++ D RS S +V+V D +V S TQ VTL T EAEYVAM G K ALF K ++ FL+P I + EDN+G
Sbjct: 344 IHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEG 592
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 162 bits (411), Expect = 8.480e-44 Identity = 99/249 (39.76%), Postives = 137/249 (55.02%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ G + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +GSL W+ T P I+NAVR VAR H+P + + +A +KI+ YL + L + ++ D VYVD D+A+K D RSVS +V+V D +V S TQ VTL T EAEYVAM G K ALF K ++ FL+P I + EDN+G
Sbjct: 59 IHVDDILYEGIERLAKMVVEALGDSLPTKNLGEIRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEG 307
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 168 bits (426), Expect = 8.700e-44 Identity = 97/249 (38.96%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +G L W+ T P +NAVRTVAR H+P + W+A +KI++YL +T L + ++ D VYVD D+A+K D RSVS +V+V +V+ S TQ V+L T EAEY+AM G K ALF ++ L+P ID+ EDN+G
Sbjct: 408 IHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEG 656
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 167 bits (424), Expect = 5.180e-43 Identity = 99/250 (39.60%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKN---DDQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + L T GE+ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +G L W+ T P I+NAVR VAR H+P +R W+A +KI+ YL T L + ++ DD VYVD D+A+K D RSVS +VIV +V S TQ V+ T EAEY+AM G K +LF ++ FL+P + ID++EDN+G
Sbjct: 975 IHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEG 1224
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.340e-42 Identity = 96/249 (38.55%), Postives = 138/249 (55.42%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGC + RDRK + +SQ ++I S + R+ S +PAS + + S +E P R +GSL W+ T I+NAVR VAR H+P + +W+A +KI+ YL +T L F ++ D VYVD D+A+K D RSVS +V V +V S TQ V+ T EAEY+AM G K ALF ++ FL+P + ID++EDN+G
Sbjct: 1084 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 1332
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.170e-42 Identity = 95/249 (38.15%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T G++ +FLGCAF RDR+ + +SQ ++I S + R+ S +PAS + + S DE P R +G L W+ T P +NAVRTVAR H+P + W+A ++I++ L +T L + ++ D VYVD D+A+K D RSVS +V+V +V+ S TQ V+L T EAEY+AM G K ALF ++ FL+P ID+ EDN+G
Sbjct: 963 IHVDDILYAGTKRLAEVIVEALGDSLPTKNLGKVIFFLGCAFSRDREAGTIEISQESYIRSVLERFNISRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQRILSNLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEG 1211
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.670e-42 Identity = 95/249 (38.15%), Postives = 138/249 (55.42%), Query Frame = 1
Query: 7 VHVDDVTVAGEPGAYDFLSTRLLGKFQTTR-GELSWFLGCAFERDRKYDALRVSQRAFIESAVSRYGADAISDLPASQSGNLGSRRNDEPVCKNPVRAALGSLSWLGGMTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 744
+HVDD+ AG + + L T GE+ +FLGC + RDRK + +SQ ++I S + R+ S +PAS + + S +E P R +GSL W+ T I+NAVR VAR H+P + +W+A +KI+ YL +T L F ++ D VYVD D+A+K D RSVS +V V +V S TQ V+ T E+EY+AM G K ALF ++ FL+P + ID++EDN+G
Sbjct: 874 IHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 1122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6189.13750.1 >prot_H-elongata_contig6189.13750.1 ID=prot_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKNDDback to top mRNA from alignment at H-elongata_contig6189:3104..4008- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6189.13750.1 ID=mRNA_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig6189:3104..4008- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6189:3104..4008- >mRNA_H-elongata_contig6189.13750.1 ID=mRNA_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig6189:3104..4008- (Himanthalia elongata Himel1 dioecious)back to top |