mRNA_H-elongata_contig61596.13711.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: D7FK12_ECTSI (Outer dynein arm docking complex protein like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK12_ECTSI) HSP 1 Score: 370 bits (949), Expect = 8.350e-122 Identity = 204/263 (77.57%), Postives = 219/263 (83.27%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNAREGGGRGKGRGGRIK 789
VR FVKNEDQNFSLFNYVNEQQNEVEKLE QLH+L+E++++FTQESGSDVHQHKQ +KDLE KL HTEA SEK+E+RCSEA T++ LKD VQNLFGRVF GE LPETV GS TDSN+MTFLGMIEEKTN LLQ FA AKEREK A AAAA M E G GE+DL GR LA A+ATVLG GPQTPMRQELIHVNPPKLEDFSSSEESGSDDD ARPLTR+ELKGRTLNKIQRKNAREGGGRGKGRGGR K
Sbjct: 374 VRTFVKNEDQNFSLFNYVNEQQNEVEKLEEQLHQLQEEEQKFTQESGSDVHQHKQALKDLEAKLVHTEAASEKYEVRCSEASLTIDALKDGVQNLFGRVFGGEALPETVSGGSVTDSNMMTFLGMIEEKTNSLLQAFARAKEREKVRANAAAALMASGSEHGGGEDDLGMGRTLAVGXXXXXXXXAVATVLGHGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDDARPLTRDELKGRTLNKIQRKNAREGGGRGKGRGGRGK 636
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S2W848_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W848_9STRA) HSP 1 Score: 219 bits (559), Expect = 7.160e-67 Identity = 125/251 (49.80%), Postives = 180/251 (71.71%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNAREG 753
VR F+KNEDQNFSLFNYVNEQ NEVEKLE Q+ +L+E+++++ QESG DVHQHKQ++K+LE KL TE +KF+++C + + T+E+LK +Q++F ++ G + + S T++N++ FLG+IE++ N +LQ++A +++E+ E QA AA G GE+ GE T G + AA+ S AA+ VLG GP TPM QELIHVNPPKL+D+SS E S ++D RPLTR+ELK +TLN++ R+ + G
Sbjct: 84 VRTFIKNEDQNFSLFNYVNEQTNEVEKLEEQIQQLKEEEQKYAQESGEDVHQHKQILKELEAKLQSTETMVDKFDMKCQDTQKTIESLKRGIQSMFNKLECG--VDTMLSDSSVTEANVLQFLGLIEQRANEVLQQYAVFQQKER-ERQAVAAE--GDGEEPEGEARDTVGSLAAAS-----SRAAVLQVLGAGPTTPMGQELIHVNPPKLDDYSSDEGSSEEEDETRPLTRDELKAKTLNRMHRRGGKGG 324
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S1XXH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH8_9STRA) HSP 1 Score: 187 bits (476), Expect = 4.630e-52 Identity = 112/254 (44.09%), Postives = 158/254 (62.20%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAE----AQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNARE 750
VR F+KNEDQNFSLFNYVNEQ NE+EKLE Q+ L E++ R+ QESG D +QHK ++KDLE +L TE+ +EK+E +C +A T+E LK +Q+ F + G + + + + T++N+MTFLGM E++ N +LQ +A + R++ AQ + + A QG E G ++ +LG GP TPM +LIHVNPPKLED+S + G DDD RPLTR+ELK RT N I ++ ++
Sbjct: 343 VRTFIKNEDQNFSLFNYVNEQTNEIEKLEEQIQGLREEEARYAQESGDDANQHKAILKDLEARLQATESMAEKYEHKCVDASATLERLKRGIQSTFKNIECGS-MSDMISESTVTETNMMTFLGMCEQRANEILQAYAFVQRRDQERTAKMAQEDMEAEMDAAAQGAAERAAQEGTT------------SMMQMLGTGPMTPMGHDLIHVNPPKLEDYSEVDVDGDDDD-ERPLTRDELKARTQNSISKRGGQK 582
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: F0Y5D3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5D3_AURAN) HSP 1 Score: 181 bits (458), Expect = 1.800e-49 Identity = 104/246 (42.28%), Postives = 152/246 (61.79%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRK 738
VR F+KNEDQNFSLFNYVNEQ NE+EKLE Q+ L++++ ++TQESG DV+QHK ++ DLE+KLA TEA + K+E +C E + +++LK + + F + E S T++N++++L +IEE+ N +++++ K R+ + A AA + GA A +VLG GP TPM Q+LIHVNPPKLED+SS + RPLTR+ELK +TLN++ R+
Sbjct: 333 VRMFIKNEDQNFSLFNYVNEQTNEIEKLEEQVQALQDEQAKYTQESGDDVNQHKLILLDLESKLATTEANASKYESKCEEYQAVIDSLKKAIASAFTKTQCERASSEIFADSSVTEANMLSYLAIIEEQCNTIIKDYVAVKARQHKQTSAEAADVAGA--------------------------APPPSVLGMGPTTPMGQDLIHVNPPKLEDYSSEXXXXXXEGETRPLTRDELKAKTLNRMYRR 552
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S3GTF5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTF5_9STRA) HSP 1 Score: 181 bits (460), Expect = 2.040e-49 Identity = 115/256 (44.92%), Postives = 162/256 (63.28%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVF---DGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAA-AASMVGAGEQGT------GENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRK 738
VR F+KNE+ NFSLFNYVNEQ NE+EK E Q+ L+E++ +F QESG+DV+QHK++++DLE+KL +EA + K+E RC + + E+LK +Q++F + DGE LP V T+ N++ LG+IE+K N+LLQ ++ ++ +A AA AS G G G +D G +S + L +VLG GP+ PM Q+L+ VNPPK ED+ S E G DD RPLTR+ELK RTLNK+ +K
Sbjct: 330 VRTFIKNEEHNFSLFNYVNEQNNEIEKYEEQIQLLKEEELKFAQESGNDVNQHKEILRDLESKLQASEAMAAKYEQRCQDLQRITESLKRGMQSIFSKFDFDQDGEGLPPPV----VTEVNMVQNLGLIEQKANLLLQHYSRVRQLLQAPPSAAKGASRTPFGASGAHHAHNAGMDDFDLEDPHGPGGEMSAN---LVSVLGTGPKVPMGQDLLRVNPPKSEDYRSDESDGDDDGDTRPLTRDELKQRTLNKLTKK 578
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A329RTY9_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A329RTY9_9STRA) HSP 1 Score: 170 bits (431), Expect = 2.090e-45 Identity = 109/258 (42.25%), Postives = 167/258 (64.73%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQ-------ESGSD--VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
V +F+K EDQNFSLFNYVNEQ NE+EKLE + L ++++R+T ++G D V QHKQ+++DLE +LA TE +EK E RC+EA+ T+ T+K +Q+LF + + +++ E + T++N+M +LG+IE+KTN +L ++A +++A+A + + E+ TA V AAG +G+ A L ++LG GP PM QE + +NPP L+D+SS +E SG ++D PLTR+ELK RTL ++R N
Sbjct: 330 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWIAALRDEERRYTGNGDGANGDAGDDDGVGQHKQLLRDLEVRLALTEQAAEKCEARCAEAQKTVNTVKRAIQSLFTKTGCNAQVMVEMLGDSVVTEANMMAYLGVIEQKTNEILHQYAAVVTKQQADAHKNKTTS----DAYDRESQFTAAAV-GAAGGTNGAVATLHSILGVGPIAPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 582
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A8K1C459_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C459_PYTOL) HSP 1 Score: 168 bits (426), Expect = 1.010e-44 Identity = 106/258 (41.09%), Postives = 161/258 (62.40%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFAC---------AKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEES-GSDDDGARPLTREELKGRTLNKIQRKN 741
V +F+K EDQNFSLFNYVNEQ NE+EKLE + L E++K+++ +SG D+ QHKQ++K+LE KL TE T++K E +C +A+ + +K +Q LF ++ + + + E + T++N+M +LG+IE+KTN +L ++A K+ ++ E +A A+ A T + G +AAA AL +VLG GP TPM QE + +NPP LED+SS ++ G ++D PLTR+ELK RTL ++R N
Sbjct: 330 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEELIAELREEEKKYSDDSGDDISQHKQLLKELEGKLHVTEQTADKCESKCQDAQKVVNAVKIGIQTLFTKIGCNSQTMVEMLGDAVVTEANLMQYLGVIEQKTNEILHQYATNVLQQPSHKGKKSDQIEQEAIFAAH--ATTNATSSTSMAHGTGMAAA-------TALHSVLGMGPLTPMGQEPLQINPPNLEDYSSEDDDDGDNEDSTHPLTRDELKVRTLKGLRRLN 578
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A0P1AYX1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYX1_PLAHL) HSP 1 Score: 167 bits (424), Expect = 1.600e-44 Identity = 107/256 (41.80%), Postives = 156/256 (60.94%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQES--------GSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKN 741
V +F+K EDQNFSLFNYVNEQ NE+EKLE L ++++ + + G ++ QHKQV+ DLET+LAHTE +EK E RC+EA+ ++ +K + +LF ++ + ++ E V + TD+N+MT+LG+IE+KTN +LQ++A A A V + + + D A + AAG +G+ A L ++LG P PM QE + +NPP L D+SS E G DDG P TR+ELK RTL ++R N
Sbjct: 320 VTSFIKKEDQNFSLFNYVNEQNNEIEKLEEWNELLRDEERGLSGNTDSATEIREGKNIRQHKQVLCDLETRLAHTEQAAEKCEARCAEAQQRVDAIKGAIHHLFTKIECNTHLMVELVGDSNVTDANLMTYLGVIEQKTNEILQQYA-----------ALVAIDVQSNKVQSDILDQAASVAVGAAGGTNGAVAKLHSILGVRPIAPMGQEPLQINPPNLNDYSSDE--GDTDDGMHPFTRDELKARTLKGMRRTN 562
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A225X440_9STRA (Outer Dynein Arm Docking Complex n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X440_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.550e-44 Identity = 106/259 (40.93%), Postives = 162/259 (62.55%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSD--------VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLA--AAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
V +F+K EDQNFSLFNYVNEQ NE+EKLE + L ++++R+T QHKQ+++DLE +LA TE +EK E RC+EA+ T+ +K +QNLF ++ + + + E + T++N+M +LG+IE+KTN +L ++A A +++ +A+ A+ + + +G A AAG G+ A L ++LG GP TPM QE + +NPP L+D+SS +E SG ++D PLTR+ELK RTL ++R N
Sbjct: 373 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWIAALRDEERRYTGNGDGTNGAADDDGAGQHKQLLRDLEARLALTEQAAEKCEARCAEAQKTVNAVKRAIQNLFTKIGCNAQAMVEMLGDSVVTEANMMAYLGVIEQKTNEILHQYAAAMAKQQEDARKNKATSDAYDRESQFAANAMSGNPTAVGAAGGTKGAVATLHSILGVGPITPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 631
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: H3H449_PHYRM (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3H449_PHYRM) HSP 1 Score: 167 bits (422), Expect = 4.370e-44 Identity = 105/259 (40.54%), Postives = 163/259 (62.93%), Query Frame = 1
Query: 1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQE-------SGSD---VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
V +F+K EDQNFSLFNYVNEQ NE+EKLE + L ++++R+T +G D V QHKQ++++LE +LA TE +EK E RC+EA+ T+ +K +Q+LF + + + + E + T++N+M +LG+IE+KTN +L +A +++A+A + + + +G + AG +G+ AAL ++LG GP TPM QE + +NPP L+D+SS +E SG ++D PLTR+ELK RTL ++R N
Sbjct: 331 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWITALRDEERRYTGNGDGANGAAGGDDDGVGQHKQLLRELEARLALTEQAAEKCESRCAEAQKTVNAVKRAIQSLFTKTGCNAQAMVEMLGDSVVTEANMMAYLGVIEQKTNEILHHYAAVIAKQQADAHKNKTTSDTYDRESQFAANAMSGNPVRTAGGTNGAAAALHSILGVGPITPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 589 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61596.13711.1 >prot_H-elongata_contig61596.13711.1 ID=prot_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVback to top mRNA from alignment at H-elongata_contig61596:204..2954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61596.13711.1 ID=mRNA_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2751bp|location=Sequence derived from alignment at H-elongata_contig61596:204..2954- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61596:204..2954- >mRNA_H-elongata_contig61596.13711.1 ID=mRNA_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig61596:204..2954- (Himanthalia elongata Himel1 dioecious)back to top |