mRNA_H-elongata_contig61596.13711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61596.13711.1
Unique NamemRNA_H-elongata_contig61596.13711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: D7FK12_ECTSI (Outer dynein arm docking complex protein like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK12_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 8.350e-122
Identity = 204/263 (77.57%), Postives = 219/263 (83.27%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNAREGGGRGKGRGGRIK 789
            VR FVKNEDQNFSLFNYVNEQQNEVEKLE QLH+L+E++++FTQESGSDVHQHKQ +KDLE KL HTEA SEK+E+RCSEA  T++ LKD VQNLFGRVF GE LPETV  GS TDSN+MTFLGMIEEKTN LLQ FA AKEREK  A AAAA M    E G GE+DL  GR LA          A+ATVLG GPQTPMRQELIHVNPPKLEDFSSSEESGSDDD ARPLTR+ELKGRTLNKIQRKNAREGGGRGKGRGGR K
Sbjct:  374 VRTFVKNEDQNFSLFNYVNEQQNEVEKLEEQLHQLQEEEQKFTQESGSDVHQHKQALKDLEAKLVHTEAASEKYEVRCSEASLTIDALKDGVQNLFGRVFGGEALPETVSGGSVTDSNMMTFLGMIEEKTNSLLQAFARAKEREKVRANAAAALMASGSEHGGGEDDLGMGRTLAVGXXXXXXXXAVATVLGHGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDDARPLTRDELKGRTLNKIQRKNAREGGGRGKGRGGRGK 636          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S2W848_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W848_9STRA)

HSP 1 Score: 219 bits (559), Expect = 7.160e-67
Identity = 125/251 (49.80%), Postives = 180/251 (71.71%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNAREG 753
            VR F+KNEDQNFSLFNYVNEQ NEVEKLE Q+ +L+E+++++ QESG DVHQHKQ++K+LE KL  TE   +KF+++C + + T+E+LK  +Q++F ++  G  +   +   S T++N++ FLG+IE++ N +LQ++A  +++E+ E QA AA   G GE+  GE   T G + AA+     S AA+  VLG GP TPM QELIHVNPPKL+D+SS E S  ++D  RPLTR+ELK +TLN++ R+  + G
Sbjct:   84 VRTFIKNEDQNFSLFNYVNEQTNEVEKLEEQIQQLKEEEQKYAQESGEDVHQHKQILKELEAKLQSTETMVDKFDMKCQDTQKTIESLKRGIQSMFNKLECG--VDTMLSDSSVTEANVLQFLGLIEQRANEVLQQYAVFQQKER-ERQAVAAE--GDGEEPEGEARDTVGSLAAAS-----SRAAVLQVLGAGPTTPMGQELIHVNPPKLDDYSSDEGSSEEEDETRPLTRDELKAKTLNRMHRRGGKGG 324          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S1XXH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH8_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.630e-52
Identity = 112/254 (44.09%), Postives = 158/254 (62.20%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAE----AQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNARE 750
            VR F+KNEDQNFSLFNYVNEQ NE+EKLE Q+  L E++ R+ QESG D +QHK ++KDLE +L  TE+ +EK+E +C +A  T+E LK  +Q+ F  +  G  + + +   + T++N+MTFLGM E++ N +LQ +A  + R++      AQ    + + A  QG  E     G              ++  +LG GP TPM  +LIHVNPPKLED+S  +  G DDD  RPLTR+ELK RT N I ++  ++
Sbjct:  343 VRTFIKNEDQNFSLFNYVNEQTNEIEKLEEQIQGLREEEARYAQESGDDANQHKAILKDLEARLQATESMAEKYEHKCVDASATLERLKRGIQSTFKNIECGS-MSDMISESTVTETNMMTFLGMCEQRANEILQAYAFVQRRDQERTAKMAQEDMEAEMDAAAQGAAERAAQEGTT------------SMMQMLGTGPMTPMGHDLIHVNPPKLEDYSEVDVDGDDDD-ERPLTRDELKARTQNSISKRGGQK 582          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: F0Y5D3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5D3_AURAN)

HSP 1 Score: 181 bits (458), Expect = 1.800e-49
Identity = 104/246 (42.28%), Postives = 152/246 (61.79%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVFDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRK 738
            VR F+KNEDQNFSLFNYVNEQ NE+EKLE Q+  L++++ ++TQESG DV+QHK ++ DLE+KLA TEA + K+E +C E +  +++LK  + + F +        E     S T++N++++L +IEE+ N +++++   K R+  +  A AA + GA                          A   +VLG GP TPM Q+LIHVNPPKLED+SS       +   RPLTR+ELK +TLN++ R+
Sbjct:  333 VRMFIKNEDQNFSLFNYVNEQTNEIEKLEEQVQALQDEQAKYTQESGDDVNQHKLILLDLESKLATTEANASKYESKCEEYQAVIDSLKKAIASAFTKTQCERASSEIFADSSVTEANMLSYLAIIEEQCNTIIKDYVAVKARQHKQTSAEAADVAGA--------------------------APPPSVLGMGPTTPMGQDLIHVNPPKLEDYSSEXXXXXXEGETRPLTRDELKAKTLNRMYRR 552          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A7S3GTF5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTF5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.040e-49
Identity = 115/256 (44.92%), Postives = 162/256 (63.28%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVF---DGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAA-AASMVGAGEQGT------GENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRK 738
            VR F+KNE+ NFSLFNYVNEQ NE+EK E Q+  L+E++ +F QESG+DV+QHK++++DLE+KL  +EA + K+E RC + +   E+LK  +Q++F +     DGE LP  V     T+ N++  LG+IE+K N+LLQ ++  ++  +A   AA  AS    G  G       G +D          G +S +   L +VLG GP+ PM Q+L+ VNPPK ED+ S E  G DD   RPLTR+ELK RTLNK+ +K
Sbjct:  330 VRTFIKNEEHNFSLFNYVNEQNNEIEKYEEQIQLLKEEELKFAQESGNDVNQHKEILRDLESKLQASEAMAAKYEQRCQDLQRITESLKRGMQSIFSKFDFDQDGEGLPPPV----VTEVNMVQNLGLIEQKANLLLQHYSRVRQLLQAPPSAAKGASRTPFGASGAHHAHNAGMDDFDLEDPHGPGGEMSAN---LVSVLGTGPKVPMGQDLLRVNPPKSEDYRSDESDGDDDGDTRPLTRDELKQRTLNKLTKK 578          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A329RTY9_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A329RTY9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.090e-45
Identity = 109/258 (42.25%), Postives = 167/258 (64.73%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQ-------ESGSD--VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
            V +F+K EDQNFSLFNYVNEQ NE+EKLE  +  L ++++R+T        ++G D  V QHKQ+++DLE +LA TE  +EK E RC+EA+ T+ T+K  +Q+LF +   + +++ E +     T++N+M +LG+IE+KTN +L ++A    +++A+A     +     +    E+  TA  V  AAG  +G+ A L ++LG GP  PM QE + +NPP L+D+SS +E SG ++D   PLTR+ELK RTL  ++R N
Sbjct:  330 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWIAALRDEERRYTGNGDGANGDAGDDDGVGQHKQLLRDLEVRLALTEQAAEKCEARCAEAQKTVNTVKRAIQSLFTKTGCNAQVMVEMLGDSVVTEANMMAYLGVIEQKTNEILHQYAAVVTKQQADAHKNKTTS----DAYDRESQFTAAAV-GAAGGTNGAVATLHSILGVGPIAPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 582          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A8K1C459_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C459_PYTOL)

HSP 1 Score: 168 bits (426), Expect = 1.010e-44
Identity = 106/258 (41.09%), Postives = 161/258 (62.40%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFAC---------AKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEES-GSDDDGARPLTREELKGRTLNKIQRKN 741
            V +F+K EDQNFSLFNYVNEQ NE+EKLE  +  L E++K+++ +SG D+ QHKQ++K+LE KL  TE T++K E +C +A+  +  +K  +Q LF ++  + + + E +     T++N+M +LG+IE+KTN +L ++A           K+ ++ E +A  A+   A    T    +  G  +AAA        AL +VLG GP TPM QE + +NPP LED+SS ++  G ++D   PLTR+ELK RTL  ++R N
Sbjct:  330 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEELIAELREEEKKYSDDSGDDISQHKQLLKELEGKLHVTEQTADKCESKCQDAQKVVNAVKIGIQTLFTKIGCNSQTMVEMLGDAVVTEANLMQYLGVIEQKTNEILHQYATNVLQQPSHKGKKSDQIEQEAIFAAH--ATTNATSSTSMAHGTGMAAA-------TALHSVLGMGPLTPMGQEPLQINPPNLEDYSSEDDDDGDNEDSTHPLTRDELKVRTLKGLRRLN 578          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A0P1AYX1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYX1_PLAHL)

HSP 1 Score: 167 bits (424), Expect = 1.600e-44
Identity = 107/256 (41.80%), Postives = 156/256 (60.94%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQES--------GSDVHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKN 741
            V +F+K EDQNFSLFNYVNEQ NE+EKLE     L ++++  +  +        G ++ QHKQV+ DLET+LAHTE  +EK E RC+EA+  ++ +K  + +LF ++  +  ++ E V   + TD+N+MT+LG+IE+KTN +LQ++A           A  A  V + +  +   D  A   + AAG  +G+ A L ++LG  P  PM QE + +NPP L D+SS E  G  DDG  P TR+ELK RTL  ++R N
Sbjct:  320 VTSFIKKEDQNFSLFNYVNEQNNEIEKLEEWNELLRDEERGLSGNTDSATEIREGKNIRQHKQVLCDLETRLAHTEQAAEKCEARCAEAQQRVDAIKGAIHHLFTKIECNTHLMVELVGDSNVTDANLMTYLGVIEQKTNEILQQYA-----------ALVAIDVQSNKVQSDILDQAASVAVGAAGGTNGAVAKLHSILGVRPIAPMGQEPLQINPPNLNDYSSDE--GDTDDGMHPFTRDELKARTLKGMRRTN 562          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: A0A225X440_9STRA (Outer Dynein Arm Docking Complex n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X440_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.550e-44
Identity = 106/259 (40.93%), Postives = 162/259 (62.55%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSD--------VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLA--AAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
            V +F+K EDQNFSLFNYVNEQ NE+EKLE  +  L ++++R+T                QHKQ+++DLE +LA TE  +EK E RC+EA+ T+  +K  +QNLF ++  + + + E +     T++N+M +LG+IE+KTN +L ++A A  +++ +A+   A+      +     +  +G   A  AAG   G+ A L ++LG GP TPM QE + +NPP L+D+SS +E SG ++D   PLTR+ELK RTL  ++R N
Sbjct:  373 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWIAALRDEERRYTGNGDGTNGAADDDGAGQHKQLLRDLEARLALTEQAAEKCEARCAEAQKTVNAVKRAIQNLFTKIGCNAQAMVEMLGDSVVTEANMMAYLGVIEQKTNEILHQYAAAMAKQQEDARKNKATSDAYDRESQFAANAMSGNPTAVGAAGGTKGAVATLHSILGVGPITPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 631          
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Match: H3H449_PHYRM (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3H449_PHYRM)

HSP 1 Score: 167 bits (422), Expect = 4.370e-44
Identity = 105/259 (40.54%), Postives = 163/259 (62.93%), Query Frame = 1
Query:    1 VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQE-------SGSD---VHQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRV-FDGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQAAAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMRQELIHVNPPKLEDFSSSEE-SGSDDDGARPLTREELKGRTLNKIQRKN 741
            V +F+K EDQNFSLFNYVNEQ NE+EKLE  +  L ++++R+T         +G D   V QHKQ++++LE +LA TE  +EK E RC+EA+ T+  +K  +Q+LF +   + + + E +     T++N+M +LG+IE+KTN +L  +A    +++A+A     +      +     +  +G  +  AG  +G+ AAL ++LG GP TPM QE + +NPP L+D+SS +E SG ++D   PLTR+ELK RTL  ++R N
Sbjct:  331 VTSFIKKEDQNFSLFNYVNEQSNEIEKLEEWITALRDEERRYTGNGDGANGAAGGDDDGVGQHKQLLRELEARLALTEQAAEKCESRCAEAQKTVNAVKRAIQSLFTKTGCNAQAMVEMLGDSVVTEANMMAYLGVIEQKTNEILHHYAAVIAKQQADAHKNKTTSDTYDRESQFAANAMSGNPVRTAGGTNGAAAALHSILGVGPITPMGQEPLQINPPNLDDYSSEDEDSGDNEDTMHPLTRDELKVRTLKGMRRLN 589          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61596.13711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK12_ECTSI8.350e-12277.57Outer dynein arm docking complex protein like n=1 ... [more]
A0A7S2W848_9STRA7.160e-6749.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XXH8_9STRA4.630e-5244.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y5D3_AURAN1.800e-4942.28Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3GTF5_9STRA2.040e-4944.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A329RTY9_9STRA2.090e-4542.25Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8K1C459_PYTOL1.010e-4441.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AYX1_PLAHL1.600e-4441.80Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A225X440_9STRA2.550e-4440.93Outer Dynein Arm Docking Complex n=1 Tax=Phytophth... [more]
H3H449_PHYRM4.370e-4440.54Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61596contigH-elongata_contig61596:204..2954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.5
Seed ortholog evalue1.7e-100
Seed eggNOG ortholog2880.D7FK12
Preferred nameODA1
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28K4A@1,2QSIU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionouter dynein arm docking complex protein like
Ec32 orthologEc-18_002850.1
Exons6
Model size792
Cds size792
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61596.13711.1prot_H-elongata_contig61596.13711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61596 204..2954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.602529-CDS-H-elongata_contig61596:203..3921622930993.602529-CDS-H-elongata_contig61596:203..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 204..392 -
1691679654.1851547-CDS-H-elongata_contig61596:203..3921691679654.1851547-CDS-H-elongata_contig61596:203..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 204..392 -
1622930993.6271937-CDS-H-elongata_contig61596:1015..12131622930993.6271937-CDS-H-elongata_contig61596:1015..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 1016..1213 -
1691679654.1945639-CDS-H-elongata_contig61596:1015..12131691679654.1945639-CDS-H-elongata_contig61596:1015..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 1016..1213 -
1622930993.6493735-CDS-H-elongata_contig61596:1456..15941622930993.6493735-CDS-H-elongata_contig61596:1456..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 1457..1594 -
1691679654.2020428-CDS-H-elongata_contig61596:1456..15941691679654.2020428-CDS-H-elongata_contig61596:1456..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 1457..1594 -
1622930993.6753714-CDS-H-elongata_contig61596:2012..20841622930993.6753714-CDS-H-elongata_contig61596:2012..2084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2013..2084 -
1691679654.2130978-CDS-H-elongata_contig61596:2012..20841691679654.2130978-CDS-H-elongata_contig61596:2012..2084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2013..2084 -
1622930993.7044106-CDS-H-elongata_contig61596:2512..25751622930993.7044106-CDS-H-elongata_contig61596:2512..2575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2513..2575 -
1691679654.2250729-CDS-H-elongata_contig61596:2512..25751691679654.2250729-CDS-H-elongata_contig61596:2512..2575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2513..2575 -
1622930993.7609723-CDS-H-elongata_contig61596:2822..29541622930993.7609723-CDS-H-elongata_contig61596:2822..2954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2823..2954 -
1691679654.2374558-CDS-H-elongata_contig61596:2822..29541691679654.2374558-CDS-H-elongata_contig61596:2822..2954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61596 2823..2954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61596.13711.1

>prot_H-elongata_contig61596.13711.1 ID=prot_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
VRAFVKNEDQNFSLFNYVNEQQNEVEKLEGQLHRLEEDKKRFTQESGSDV
HQHKQVVKDLETKLAHTEATSEKFELRCSEARHTMETLKDKVQNLFGRVF
DGEILPETVDSGSTTDSNIMTFLGMIEEKTNILLQEFACAKEREKAEAQA
AAASMVGAGEQGTGENDLTAGRVLAAAGNVSGSGAALATVLGRGPQTPMR
QELIHVNPPKLEDFSSSEESGSDDDGARPLTREELKGRTLNKIQRKNARE
GGGRGKGRGGRIK*
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mRNA from alignment at H-elongata_contig61596:204..2954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61596.13711.1 ID=mRNA_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2751bp|location=Sequence derived from alignment at H-elongata_contig61596:204..2954- (Himanthalia elongata Himel1 dioecious)
GTTCGGGCGTTTGTGAAGAACGAGGATCAGAATTTCTCCTTGTTCAACTA CGTCAACGAGCAGCAGAATGAAGTGGAGAAGCTCGAGGGACAGCTTCATC GGCTCGAAGAGGACAAGAAGCGGTTCACGCAGGTGACTGAAATTTCGCTT TAAGCAATGCGCCGTGTACCAAACCGCGTCATGTTGAGTTAACATTACTT GTTACTGTCGGCAGATATGAATGGCAGTTGGAGTGTAACCAACAATGTTT ACAGAATCTGTTCTGAGGACAAGTGAGGATGCACACACCATCTCGTCAAT ACTCATTTGTATTCGTGGTACGCTACAAGCGCATAAAAAGTAACTGGTCT AGCGCCTCCCTGTCGACTGATGGACCTAGGAATCCGGAAGCGACGTTCAT CAGCATAAGCAGGTCGTCAAGGACCTCGAAACCAAGCTCGCGGTGAGCTA ATATAACTTCACGTCCTGATCTCCTGCCATGTCCACACGTGCGTAAAGCA TTCGTATTGCTATCAGACTAGATCGGTGTAATTCCATCGTACCTCGCCGT GGTAATCCCACCTAGCTATAATAATCGATCGGGATGGTACAAATAGCCTA GAAAATAGATAGGAAAATGCCTTTGCTCGACGGAAGGGAGCCTGTCCACG TTCGCATACCACGCGTATAATGTGAGCCGGGTAGATAACATACTGGAGCC CGATGTGGATAACTCGGTGATGTTCACCAGAACTTGGACGACGTTCCCAG GAAAGACAAAAACGCCAGAAGCGCTTCCCTAGAGGGGAGACGTATCGTAT ATTGCATACGTGTACTACTGCTATTGCTTTGTTTACGCATAACCGCACAT GCTCGCATGCACAAATGCAGCACACGGAGGCAACGTCGGAAAAATTCGAG CTCCGTTGTTCCGAGGCACGCCATACCATGGAGACTCTCAAGGTGAGCGA TTAGAGCCTATGTGGCGAAGGTGTACGAGTATACAAGAAATGTGTATTCC CGGCCGACCATTAAATAATGAGACTGAGTCAACGCAGGAAGACATTCTTA TGACGACGGAGAATGGCTGCTGTAGGTAGAGGGTGTACATTAAGGATCTG TCGGGCAACCCTTGTATAAATGATTCCGGTATACGTGGTGTGAGATAAAT CCAGGCTGTTGTTTCAAACGTCGAGGCAATGGGGACTCTGCCGACCACCC ATGATCATCACTTGCTTCTTGTAACTGGTTTATCCCACCTTGAATTTCCG ATAGATCGACTTTTGCCTTCTGTGCTAGTTGTAGGCCCGGCTGCACGCTA TGCTGCTCTGCAGCGCACGCCGTTGCATCGCGCAAACAATTATGACGCTG AACGTTGCAGGATAAAGTGCAAAACCTATTTGGGCGTGTGTTCGACGGCG AGATCTTGCCGGAGACAGTTGACAGTGGCAGCACGACGGACTCGAACATC ATGACTTTTCTCGGCATGATAGAAGAGAAGACGAACATCCTGCTACAGGT TTCTGTTGCACTCACGTTAGCACAAACCACGCTACTGTATGCGGCGAGCT TCGTTGTAATATAATATTATCGTACTGAGTAACAACAAGCAGAATTGTTG ATAATCAGCACCAAGGGCACACGCCCGCTCGTAGTAAACACTAGCCTAGT ACCGAAGTCAATATTTTGGATGCTTACTCCCAGTTTTGCAGCTTTAGAGA GACGTAACAATTTCCCGCCGTACTCACCAATATTGATATAGGAGTTCGCC TGCGCAAAAGAACGAGAGAAGGCCGAAGCCCAGGCAGCGGCAGCATCGAT GGTGGGCGCAGGCGAACAGGGGACGGGGGAGAATGACTTGACAGCGGGTC GGGTATTGGCGGCGGCAGGGAACGTCAGCGGCAGCGGGGCAGCGTTGGCG ACTGTACTGGGGCGCGGTCCCCAAACACCTATGCGGCAGGTAGGTGGTGG GGGGAGTCAGAGGTGGACGCGTACGTGAGCCTGGGTGGCCAAGAATTTGG GAGGGAGATTGGTTGAGTCTTCCCTCAAGTGTAAGGGGAGGCGGTATCGA AACAGCTTCCCATGAGGTAAGGACAACCCATTCCCTCACCTAATTGACTC GTATGCCCCCAACATATCAATTTCGCCAGCAACTAAACAAATCTATCCCC GGGAGGGTCTGTCTTGATACCGACATCCCCTGAAAGTGTGTTCACATCCT TCTAATCCTCCACCCCTTCACCTATCACTGAAATACTCGACTCGAGCAAT GACTAGACTACGCAATCAGCTAACCCTCAAACGCGCTGATAATCTTCAGG CAAGGCTAGTCTTGTAAACATTCAGAAGGAGGCAAATCATTCCTTTAATT ATAGTTTTAGCAGTAAACACTCTATAGTAGCTACAGTTCATTCGAATATC AAAGCCAGCGAACATCGCCCATAATCTCCAAGGGTCGTAGATATGGTAAT ACGTGGCGGCTACTATCCCCCGAGTACGCACAAGACGACTTAATTTTTTG TTCCACTAACTCCACACCTACACACCCACGTTTTTTATTTCACCCGTCAC GGGAATTTGTAGGAACTGATCCACGTCAATCCACCGAAGCTAGAAGATTT TTCGTCATCAGAAGAAAGCGGTAGTGATGACGACGGCGCACGTCCTCTCA CGAGGGAAGAGCTCAAGGGGCGCACCCTCAACAAGATCCAGCGGAAGAAT GCCAGAGAGGGGGGGGGTAGGGGCAAAGGAAGAGGCGGGCGAATCAAGTA A
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Coding sequence (CDS) from alignment at H-elongata_contig61596:204..2954-

>mRNA_H-elongata_contig61596.13711.1 ID=mRNA_H-elongata_contig61596.13711.1|Name=mRNA_H-elongata_contig61596.13711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig61596:204..2954- (Himanthalia elongata Himel1 dioecious)
GTTCGGGCGTTTGTGAAGAACGAGGATCAGAATTTCTCCTTGTTCAACTA
CGTCAACGAGCAGCAGAATGAAGTGGAGAAGCTCGAGGGACAGCTTCATC
GGCTCGAAGAGGACAAGAAGCGGTTCACGCAGGTTCGGGCGTTTGTGAAG
AACGAGGATCAGAATTTCTCCTTGTTCAACTACGTCAACGAGCAGCAGAA
TGAAGTGGAGAAGCTCGAGGGACAGCTTCATCGGCTCGAAGAGGACAAGA
AGCGGTTCACGCAGGAATCCGGAAGCGACGTTCATCAGCATAAGCAGGTC
GTCAAGGACCTCGAAACCAAGCTCGCGGAATCCGGAAGCGACGTTCATCA
GCATAAGCAGGTCGTCAAGGACCTCGAAACCAAGCTCGCGCACACGGAGG
CAACGTCGGAAAAATTCGAGCTCCGTTGTTCCGAGGCACGCCATACCATG
GAGACTCTCAAGCACACGGAGGCAACGTCGGAAAAATTCGAGCTCCGTTG
TTCCGAGGCACGCCATACCATGGAGACTCTCAAGGATAAAGTGCAAAACC
TATTTGGGCGTGTGTTCGACGGCGAGATCTTGCCGGAGACAGTTGACAGT
GGCAGCACGACGGACTCGAACATCATGACTTTTCTCGGCATGATAGAAGA
GAAGACGAACATCCTGCTACAGGATAAAGTGCAAAACCTATTTGGGCGTG
TGTTCGACGGCGAGATCTTGCCGGAGACAGTTGACAGTGGCAGCACGACG
GACTCGAACATCATGACTTTTCTCGGCATGATAGAAGAGAAGACGAACAT
CCTGCTACAGGAGTTCGCCTGCGCAAAAGAACGAGAGAAGGCCGAAGCCC
AGGCAGCGGCAGCATCGATGGTGGGCGCAGGCGAACAGGGGACGGGGGAG
AATGACTTGACAGCGGGTCGGGTATTGGCGGCGGCAGGGAACGTCAGCGG
CAGCGGGGCAGCGTTGGCGACTGTACTGGGGCGCGGTCCCCAAACACCTA
TGCGGCAGGAGTTCGCCTGCGCAAAAGAACGAGAGAAGGCCGAAGCCCAG
GCAGCGGCAGCATCGATGGTGGGCGCAGGCGAACAGGGGACGGGGGAGAA
TGACTTGACAGCGGGTCGGGTATTGGCGGCGGCAGGGAACGTCAGCGGCA
GCGGGGCAGCGTTGGCGACTGTACTGGGGCGCGGTCCCCAAACACCTATG
CGGCAGGAACTGATCCACGTCAATCCACCGAAGCTAGAAGATTTTTCGTC
ATCAGAAGAAAGCGGTAGTGATGACGACGGCGCACGTCCTCTCACGAGGG
AAGAGCTCAAGGGGCGCACCCTCAACAAGATCCAGCGGAAGAATGCCAGA
GAGGGGGGGGGTAGGGGCAAAGGAAGAGGCGGGCGAATCAAGTAAGAACT
GATCCACGTCAATCCACCGAAGCTAGAAGATTTTTCGTCATCAGAAGAAA
GCGGTAGTGATGACGACGGCGCACGTCCTCTCACGAGGGAAGAGCTCAAG
GGGCGCACCCTCAACAAGATCCAGCGGAAGAATGCCAGAGAGGGGGGGGG
TAGGGGCAAAGGAAGAGGCGGGCGAATCAAGTAA
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