mRNA_H-elongata_contig61595.13710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61595.13710.1
Unique NamemRNA_H-elongata_contig61595.13710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 4.110e-84
Identity = 139/246 (56.50%), Postives = 173/246 (70.33%), Query Frame = 1 
Query:   61 GTGSKGPAAAATAPARS---PVPIDALTRTKMVLMEKKRQAAAAGLTRVCSAGAGGLKKAKIKIAGALPSAATVMLDPLKYPASGFLLTQEFHSFERAEDAGDQDYVPTEPLVKALKKFGLAEDGNGDGGSVGASKAQFNETLVIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDDAGFHIAIDGKYCTTFVKRKELPMNGE 789
            G G  G AAA    A     P P DA++R KM+L EKKR+AAA   +   S  AG L+KAKI  A   PS+    LDP+KYPASG LL  E+ +F   E  G++ Y P +PLV+ LK FG+A+  +G   + G +K QF+ETLV+R T+P HS SW INICP +HKDF EILFHFNPRRRFVAMNNRE N+WGQQEKHM   +WP++FNVSI++AVQID AGFH+A+DGKYC TF  R ++P +GE
Sbjct:  119 GDGKPGIAAATVPQAEEKPGPAPTDAVSRAKMIL-EKKRKAAARFGSGASSGAAGVLRKAKITKATGTPSS-NPRLDPIKYPASGLLLRDEYRTFAEIEKDGERVYEPLDPLVRLLKNFGIADSNSG---ADGVAKKQFHETLVMRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGE 359
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BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 4.340e-72
Identity = 104/167 (62.28%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:  289 KYPASGFLLTQEFHSFERAEDAGDQDYVPTEPLVKALKKFGLAEDGNGDGGSVGASKAQFNETLVIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDDAGFHIAIDGKYCTTFVKRKELPMNGE 789
            KYPASG LL  E+ +F   E  G++ Y P +PLV+ LK FG+A+  +G  G V   K QF+ETLV+R T+P HS SW INICP +HK+F EILFHFNPRRRFVAMNNRE N+WGQQEKHM   +WP++FNVSI+LAVQID AGFH+A+DGKYC TF  R ++P N E
Sbjct:   13 KYPASGLLLRDEYRTFAEIEKEGERAYEPLDPLVRLLKNFGIADSNSGADGVV---KKQFHETLVMRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDE 176
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BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Match: A0A835YJA2_9STRA (Galectin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.360e-21
Identity = 65/216 (30.09%), Postives = 103/216 (47.69%), Query Frame = 1 
Query:  151 LMEKKRQAAAAGLTRVCSAGAGGLKKAK-IKIAGALPSAATVMLDPLKYPASGFLLTQEFHSFERAEDAGDQDYVPTEP---LVKALKKFGLAEDGNGDGGSVGASKAQFNETLVIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRR----FVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDDAGFHIAIDGKYCTTFVKRKEL 774
            ++++KR+A  A   R  S GA   K+AK + +AG   S     ++   +P SG +               +QD+ PT+    LV  L  F L +                 +TLV+R+TVP  S  WGI++CP +H DF  +L+HFNPR +     +  N+R D  W          ++P +F ++   A+QID  GFH+ + G Y  +F  R+ +
Sbjct:    1 MLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVS---TEINKDAFPVSGLVW--------------NQDWDPTQETARLVVPLTDFALDQ----------------KQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLN-EFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPI 182
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BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Match: A0A7S0GIA8_9STRA (Galectin (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIA8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.520e-17
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:  451 ASKAQFNETLVIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDDAGFHIAIDGKYCTTFVKRKELP 777
            A + Q N TL I+   PP S+ + INI    H+DF ++LFHFNPR+R     + +N R+D +WGQ    +P    P +F   S  L VQ++  GF + ID K+C     R +LP
Sbjct:  228 AMRGQGNNTLAIKFAAPPESERFSINIAGPGHRDFFDVLFHFNPRQRHKGGQLVVNERQDGIWGQGVA-VPLSTLPLIFGQNSCTLTVQVNGGGFDVFIDEKHCARLEHRTQLP 340
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BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Match: A0A7S4K6P9_9STRA (Galectin n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6P9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.690e-13
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:  442 SVGASKAQFNETLVIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDDAGFHIAIDGKYCTTFVKRKELPMN 783
            S  A     N TL ++   P  S+ + +NI    H+D+ +ILFHFNPR+R     V +N++++ +WG    ++P  + P +F   S+ L +QI   G+ + ID K+C     R +LP N
Sbjct:  250 SAQAQAGAGNNTLAVKFMAPEDSRRFSLNIAGPGHRDYHDILFHFNPRQREKGGQVVINDKQEGIWGSAV-NVPLSQCPIIFGQPSMTLIIQITGDGYDVFIDNKHCARLEHRTQLPPN 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61595.13710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJF5_ECTSI4.110e-8456.50Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JWU1_9PHAE4.340e-7262.28Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
A0A835YJA2_9STRA9.360e-2130.09Galectin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A7S0GIA8_9STRA5.520e-1739.47Galectin (Fragment) n=1 Tax=Proboscia inermis TaxI... [more]
A0A7S4K6P9_9STRA2.690e-1333.61Galectin n=3 Tax=Odontella aurita TaxID=265563 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61595contigH-elongata_contig61595:13..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.9
Seed ortholog evalue2.5e-69
Seed eggNOG ortholog2880.D7FJF5
EggNOG free text desc.Galactoside-binding lectin
EggNOG OGs28MKM@1,2QU4C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size791
Cds size759
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61595.13710.1prot_H-elongata_contig61595.13710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61595 13..1673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.4621966-CDS-H-elongata_contig61595:12..341622930993.4621966-CDS-H-elongata_contig61595:12..34Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 13..34 -
1691679654.1410332-CDS-H-elongata_contig61595:12..341691679654.1410332-CDS-H-elongata_contig61595:12..34Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 13..34 -
1622930993.480906-CDS-H-elongata_contig61595:349..4801622930993.480906-CDS-H-elongata_contig61595:349..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 350..480 -
1691679654.1502347-CDS-H-elongata_contig61595:349..4801691679654.1502347-CDS-H-elongata_contig61595:349..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 350..480 -
1622930993.4944682-CDS-H-elongata_contig61595:802..11471622930993.4944682-CDS-H-elongata_contig61595:802..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 803..1147 -
1691679654.158081-CDS-H-elongata_contig61595:802..11471691679654.158081-CDS-H-elongata_contig61595:802..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 803..1147 -
1622930993.5117652-CDS-H-elongata_contig61595:1412..16731622930993.5117652-CDS-H-elongata_contig61595:1412..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 1413..1673 -
1691679654.1691198-CDS-H-elongata_contig61595:1412..16731691679654.1691198-CDS-H-elongata_contig61595:1412..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61595 1413..1673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.531312-UTR-H-elongata_contig61595:1673..17031622930993.531312-UTR-H-elongata_contig61595:1673..1703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61595 1674..1703 -
1691679654.1769934-UTR-H-elongata_contig61595:1673..17031691679654.1769934-UTR-H-elongata_contig61595:1673..1703Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61595 1674..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61595.13710.1

>prot_H-elongata_contig61595.13710.1 ID=prot_H-elongata_contig61595.13710.1|Name=mRNA_H-elongata_contig61595.13710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MSAPRRIGDQGTGSKGPAAAATAPARSPVPIDALTRTKMVLMEKKRQAAA
AGLTRVCSAGAGGLKKAKIKIAGALPSAATVMLDPLKYPASGFLLTQEFH
SFERAEDAGDQDYVPTEPLVKALKKFGLAEDGNGDGGSVGASKAQFNETL
VIRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWG
QQEKHMPGPKWPDLFNVSIHLAVQIDDAGFHIAIDGKYCTTFVKRKELPM
NGE
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mRNA from alignment at H-elongata_contig61595:13..1703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61595.13710.1 ID=mRNA_H-elongata_contig61595.13710.1|Name=mRNA_H-elongata_contig61595.13710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1691bp|location=Sequence derived from alignment at H-elongata_contig61595:13..1703- (Himanthalia elongata Himel1 dioecious)
CCGAACGGTGCGAAGGTTTCGCGCTCGCCAATGTCGGCACCTCGTCGCAT
CGGTGATCAAGGAACAGGGTCAAAGGGACCGGCCGCCGCCGCTACCGCAC
CCGCTCGCTCCCCCGTGCCGATTGATGCGCTTACCCGAACAAAGATGGTA
CTTATGGAGAAGAAGCGACAAGCAGCCGCGGCGGGACTGACTAGGGTTTG
CTCGGCGGGTGCCGGAGGGCTGAAAAAGGCAAAAATTAAGATTGCGGGAG
CGCTGCCCTCGGCGGCCACTGTGATGCTGGATCCCCTTAAGGTGCGCTCG
TGTGCTGACCGCCTCAGTTTCGCCGCTGAACGTTTTAAGGCATATATATA
TTAGCCAAGGGCCTGGGACCGGTTGATTTAACGAGCGCGTGCCAAAGACG
GCGAGCTCCGAACCTGACCCTTTAGCGCGCTAGGCACCCCACCTTCCTCT
TCCCCCCTCGATGAGTTTTGGCTGAAGCTCGCCTCCCTTCTTTCGACAGT
ACTTGAACCTTTACCGTTCACGTCGTTCCGGCCGCCGATCCTCTTTGTTA
CCACAGTACCCAGCTTCGGGATTTTTGCTGACCCAAGAATTTCACTCTTT
CGAAAGAGCAGAGGACGCAGGGGACCAGGACTACGTGCCGACCGAACCTC
TCGTAAAGGCTCTGAAAAAATTCGGGCTGGCCGAAGACGGTAACGGCGAC
GGTGGTAGTGTGGGGGCGAGTAAGGCTCAATTTAATGAGACGCTGGTTAT
TCGTCTCACCGTGCCGCCCCACAGTCAGTCGTGGGGCATCAACATATGCC
CCTCGGAACACAAGGACTTTTCGGAAATACTTTTCCACTTCAACCCTCGC
CGGAGGTTCGTGGCAATGAATAACCGCGAAGATAACGTTTGGGGACAACA
GGTACACTCATGTATGTGTCAGTCAATACGGGGGTCGCTGGCGACGATTT
GAGTCGTCTATAGCAATATTGCCTGCTTGACGCTGAGGAATTGGTGTGAA
TTGTACGTGGCGCTTATCTACCAGTCGCCCGTTTCCGACCCCGGTTTTGG
TGTGGGGCGTGTATGTGTCCATTTGAGCCTTTTGCGACGCGTTCGATTCA
TTGCAATGTCGTTTCGAACGCAAGTTGCGGAACGCGCCCTCGATGGGTTA
TGTATAATCGTTCATCCCCTGAGCTCCCAATACGATGACTCCTTGTACTT
GTTATGTTGTATCTCGCCAACAGGAAAAGCATATGCCGGGACCGAAATGG
CCGGATTTGTTCAACGTATCGATCCACCTTGCGGTGCAGATTGACGATGC
TGGCTTCCACATCGCCATCGACGGAAAATACTGCACTACGTTCGTCAAGA
GAAAGTGAGGCTTAGGGAAAAAGGAGAAGCGAGGTTCAGGGTCGAAAGCA
ACCGATTGCCCGCCACCTTCGTGCTGACCCCGTACACAAAAGTGCTATAT
TTTTTGTGTTTCGTAATACGCCGAAACAATACGTGTCGGAAGGTTGCCTA
TGCCTTGATTTATTTCAACTGGCAAGGGGATCCTCACACATTTATGTCGA
TGTTTCCCGGAAACCGTGAGGTAAAGGGTTGTTTGCGTACGATTTCGGAC
CGTGGGACGTCAAATAGCCAAAAGGCGATTATCGAAACGTCTCTTGTTTG
TCTGCGTGGGTCCCGACAGGGAACTGCCAATGAATGGGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig61595:13..1703-

>mRNA_H-elongata_contig61595.13710.1 ID=mRNA_H-elongata_contig61595.13710.1|Name=mRNA_H-elongata_contig61595.13710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig61595:13..1703- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCACCTCGTCGCATCGGTGATCAAGGAACAGGGTCAAAGGGACC
GGCCGCCGCCGCTACCGCACCCGCTCGCTCCCCCGTGCCGATTGATGCGC
TTACCCGAACAAAGATGGTACTTATGGAGAAGAAGCGACAAGCAGCCGCG
GCGGGACTGACTAGGGTTTGCTCGGCGGGTGCCGGAGGGCTGAAAAAGGC
AAAAATTAAGATTGCGGGAGCGCTGCCCTCGGCGGCCACTGTGATGCTGG
ATCCCCTTAAGATGTCGGCACCTCGTCGCATCGGTGATCAAGGAACAGGG
TCAAAGGGACCGGCCGCCGCCGCTACCGCACCCGCTCGCTCCCCCGTGCC
GATTGATGCGCTTACCCGAACAAAGATGGTACTTATGGAGAAGAAGCGAC
AAGCAGCCGCGGCGGGACTGACTAGGGTTTGCTCGGCGGGTGCCGGAGGG
CTGAAAAAGGCAAAAATTAAGATTGCGGGAGCGCTGCCCTCGGCGGCCAC
TGTGATGCTGGATCCCCTTAAGTACCCAGCTTCGGGATTTTTGCTGACCC
AAGAATTTCACTCTTTCGAAAGAGCAGAGGACGCAGGGGACCAGGACTAC
GTGCCGACCGAACCTCTCGTAAAGGCTCTGAAAAAATTCGGGCTGGCCGA
AGACGGTAACGGCGACGGTGGTAGTGTGGGGGCGAGTAAGGCTCAATTTA
ATGAGACGCTGGTTATTCGTCTCACCGTGCCGCCCCACAGTCAGTCGTGG
GGCATCAACATATGCCCCTCGGAACACAAGGACTTTTCGGAAATACTTTT
CCACTTCAACCCTCGCCGGAGGTTCGTGGCAATGAATAACCGCGAAGATA
ACGTTTGGGGACAACAGTACCCAGCTTCGGGATTTTTGCTGACCCAAGAA
TTTCACTCTTTCGAAAGAGCAGAGGACGCAGGGGACCAGGACTACGTGCC
GACCGAACCTCTCGTAAAGGCTCTGAAAAAATTCGGGCTGGCCGAAGACG
GTAACGGCGACGGTGGTAGTGTGGGGGCGAGTAAGGCTCAATTTAATGAG
ACGCTGGTTATTCGTCTCACCGTGCCGCCCCACAGTCAGTCGTGGGGCAT
CAACATATGCCCCTCGGAACACAAGGACTTTTCGGAAATACTTTTCCACT
TCAACCCTCGCCGGAGGTTCGTGGCAATGAATAACCGCGAAGATAACGTT
TGGGGACAACAGGAAAAGCATATGCCGGGACCGAAATGGCCGGATTTGTT
CAACGTATCGATCCACCTTGCGGTGCAGATTGACGATGCTGGCTTCCACA
TCGCCATCGACGGAAAATACTGCACTACGTTCGTCAAGAGAAAGAAAAGC
ATATGCCGGGACCGAAATGGCCGGATTTGTTCAACGTATCGATCCACCTT
GCGGTGCAGATTGACGATGCTGGCTTCCACATCGCCATCGACGGAAAATA
CTGCACTACGTTCGTCAAGAGAAAGGAACTGCCAATGAATGGGGAAGGAA
CTGCCAATGAATGGGGAA
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