mRNA_H-elongata_contig61557.13708.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61557.13708.1
Unique NamemRNA_H-elongata_contig61557.13708.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.760e-40
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            YVS NLHHWIDLIFGYKQRGPAA++AHNVFYYLTY GAVDLA IQDEGLRRATELQIAHFGQCPAQLF RPHPAR
Sbjct: 1984 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQCPAQLFGRPHPAR 2058          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A835ZH49_9STRA (BEACH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH49_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.090e-36
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            +VS NLHHWIDLIFG+KQ+G AA +AHNVFYYLTYYGA+DL KI+D+ LRRATELQIAHFGQCP QLF+RPHP R
Sbjct:  282 HVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPR 356          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A7S2WRZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRZ9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.430e-32
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            +VS+ LHHWIDLIFGY+QRG AA +AHNVFYYLTY G VD+++I+D  +RRATELQIAHFGQCP QLF RPHP R
Sbjct:  695 HVSSQLHHWIDLIFGYQQRGQAAVQAHNVFYYLTYAGCVDISQIEDPVMRRATELQIAHFGQCPQQLFTRPHPTR 769          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A7S1ZT33_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZT33_TRICV)

HSP 1 Score: 117 bits (293), Expect = 8.310e-32
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    4 VSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
             SA+L  WIDLIFG KQ+GP + EAHNVF+YLTYYG+VD+A I+DEGLRR+TE QIAHFGQCP QLF RPH A+
Sbjct:   71 ASASLPRWIDLIFGRKQQGPESVEAHNVFFYLTYYGSVDVASIEDEGLRRSTEDQIAHFGQCPMQLFWRPHVAK 144          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A7S3MHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHR3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.580e-31
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            YV+ +LH WIDLIFGYKQRGP A EA+NVFYYLTYYG+V+   I+DE LRRATELQIAHFGQ P QLF  PHPAR
Sbjct:  137 YVTTHLHEWIDLIFGYKQRGPDAVEANNVFYYLTYYGSVNHYMIKDESLRRATELQIAHFGQTPMQLFKVPHPAR 211          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A7S0NBQ1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBQ1_9CRYP)

HSP 1 Score: 114 bits (285), Expect = 3.000e-31
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            +VSANLHHWIDLIFG KQRGPAA+EA NVFYYLTY G  DL  I D GLRR+ E QI  FGQ P QLF +PHP R
Sbjct:   15 FVSANLHHWIDLIFGCKQRGPAAEEAVNVFYYLTYEGGADLDAIADPGLRRSAEAQIRSFGQTPRQLFTKPHPQR 89          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A482SZ90_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ90_9ARCH)

HSP 1 Score: 124 bits (310), Expect = 3.040e-31
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            YV+ +LH WIDLIFGYKQRGP A EA NVFYYLTYYGAVD   I+DE LRRATELQIAHFGQ P QLF  PHPAR
Sbjct: 1939 YVTEHLHEWIDLIFGYKQRGPDAVEAKNVFYYLTYYGAVDHYMIEDETLRRATELQIAHFGQVPMQLFKTPHPAR 2013          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: M4BVS8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVS8_HYAAE)

HSP 1 Score: 122 bits (305), Expect = 1.430e-30
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            YVS++LH WIDLIFGYKQRG AA +A+NVFYYLTYYG VDL K++D  LR + ELQIAHFGQCP QLF  PHPAR
Sbjct: 1150 YVSSHLHSWIDLIFGYKQRGRAALQANNVFYYLTYYGVVDLDKVEDPCLRESMELQIAHFGQCPMQLFAAPHPAR 1224          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A7S2AUL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AUL0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.080e-30
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            +VS NLH WIDLIFG KQRGP+A +A NVFYYLTYYG+VDLA I D  +R A E+QIAHFGQCP QLF RPHPAR
Sbjct:  275 HVSRNLHKWIDLIFGEKQRGPSAVKADNVFYYLTYYGSVDLASITDSTMRLAYEMQIAHFGQCPMQLFTRPHPAR 349          
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Match: A0A3M6VIH4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIH4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.990e-30
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLRRATELQIAHFGQCPAQLFNRPHPAR 225
            YVS++LH WIDLIFGYKQRG A+ +A+NVFYYLTYYG VDL K++D  LR + ELQIAHFGQCP QLF  PHP R
Sbjct: 2185 YVSSHLHSWIDLIFGYKQRGRASLQANNVFYYLTYYGVVDLDKVEDSSLRESMELQIAHFGQCPMQLFAAPHPKR 2259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61557.13708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE2.760e-4092.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZH49_9STRA1.090e-3680.00BEACH domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2WRZ9_9STRA3.430e-3274.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1ZT33_TRICV8.310e-3272.97Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3MHR3_9STRA1.580e-3176.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0NBQ1_9CRYP3.000e-3172.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A482SZ90_9ARCH3.040e-3178.67DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
M4BVS8_HYAAE1.430e-3074.67Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S2AUL0_9STRA2.080e-3074.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A3M6VIH4_9STRA4.990e-3072.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61557contigH-elongata_contig61557:1327..2492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.5e-33
Seed eggNOG ortholog2880.D8LFY8
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930993.2892888-CDS-H-elongata_contig61557:1326..15121622930993.2892888-CDS-H-elongata_contig61557:1326..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61557 1327..1512 +
1691679654.0909522-CDS-H-elongata_contig61557:1326..15121691679654.0909522-CDS-H-elongata_contig61557:1326..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61557 1327..1512 +
1622930993.312031-CDS-H-elongata_contig61557:2453..24921622930993.312031-CDS-H-elongata_contig61557:2453..2492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61557 2454..2492 +
1691679654.1025054-CDS-H-elongata_contig61557:2453..24921691679654.1025054-CDS-H-elongata_contig61557:2453..2492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61557 2454..2492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61557.13708.1prot_H-elongata_contig61557.13708.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61557 1327..2492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61557.13708.1

>prot_H-elongata_contig61557.13708.1 ID=prot_H-elongata_contig61557.13708.1|Name=mRNA_H-elongata_contig61557.13708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
YVSANLHHWIDLIFGYKQRGPAAKEAHNVFYYLTYYGAVDLAKIQDEGLR
RATELQIAHFGQCPAQLFNRPHPAR
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mRNA from alignment at H-elongata_contig61557:1327..2492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61557.13708.1 ID=mRNA_H-elongata_contig61557.13708.1|Name=mRNA_H-elongata_contig61557.13708.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig61557:1327..2492+ (Himanthalia elongata Himel1 dioecious)
TACGTGTCGGCGAATCTCCACCACTGGATCGACCTGATCTTTGGGTACAA ACAGCGAGGGCCCGCCGCGAAGGAGGCTCACAACGTCTTCTACTACCTTA CGTACTACGGCGCCGTCGACCTGGCCAAGATTCAGGACGAGGGACTGCGG CGCGCCACCGAGCTCCAGATCGCCCACTTTGGTCAGGTATGGGGGGAGGC GTTTTTGACGCGGGAGGGAGGGAGATGGTGCTGTCTGTCTATTGGGGTGG AAGGGGTGGAATATTCTTACATTCAGAAACACAGTGAAGACTCGTGATTT GATTGGTCAGATGGTGAAATAAATGACAGTTCCGGAGTTGTCTTCACCGC GAAGTCGTACACCTCACGTCAGTGGGGCACAATAAGAGCAATAAGAGCTG ACAAAAGCTACCCCAGTAGAATAGCAGTGGACACCGGTGTCGATTACGTT TCTAGGAAAGTAGTTAATACCATCTAACCAATCATACCGCAAGAACGGCG GGTCTTCTTTTAAGACGTCGTATGTACACAAGAGGTTTTCCCCGATTGAG AGGAGGCGTTATGGTGTAATAATAAAAGGGTTTTGAGGGTTTGGATGGGG AGGGGCTGGTGTTTGGATTCACGGGAATTTTACACGGCTCGTGATCTACG TTTGTTGCAGACATGATCGTTGTAGAGCTTCGGCCGCATTGTACGTGGTG TGTGCTTAGCTCTAGACCTAACACGACGATAGTTGCTCCCCTGGACTGCA TCTCTCACGGGACTAAGAAGGCGTGGGACGTTCGAAGGGTTGGAATGAGT TCAAGTTTTTAAAAAAAATATAAATGTTGCAAATCGTACGTACTGATTTA AGTTTGTCGGGTGCTCGTAAATGTAGTATCATCACATTATGCGCATGATT ATATTTTGAAAAGCTAGAGAGGGAGGGGTCCAACATTTACGTTTGTCGTT TTTTTTAAAAGATGGTAATCGCGAGCTATGCTTTGTTTTAACCGTACTAT TTCGCCCGCGCAGCATTTGACTCTCACATACTCTTTATCCCTCCCCCTTG TTCCTCTCTCCCCCTATCACATACGCATCTTTCTTTTACAAAACCCCGTT GGCCGTTTATCCCTGGCCCTTCTTCAGTGCCCGGCACAACTGTTCAACAG GCCGCACCCCGCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig61557:1327..2492+

>mRNA_H-elongata_contig61557.13708.1 ID=mRNA_H-elongata_contig61557.13708.1|Name=mRNA_H-elongata_contig61557.13708.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig61557:1327..2492+ (Himanthalia elongata Himel1 dioecious)
TACGTGTCGGCGAATCTCCACCACTGGATCGACCTGATCTTTGGGTACAA
ACAGCGAGGGCCCGCCGCGAAGGAGGCTCACAACGTCTTCTACTACCTTA
CGTACTACGGCGCCGTCGACCTGGCCAAGATTCAGGACGAGGGACTGCGG
CGCGCCACCGAGCTCCAGATCGCCCACTTTGGTCAGTACGTGTCGGCGAA
TCTCCACCACTGGATCGACCTGATCTTTGGGTACAAACAGCGAGGGCCCG
CCGCGAAGGAGGCTCACAACGTCTTCTACTACCTTACGTACTACGGCGCC
GTCGACCTGGCCAAGATTCAGGACGAGGGACTGCGGCGCGCCACCGAGCT
CCAGATCGCCCACTTTGGTCAGTGCCCGGCACAACTGTTCAACAGGCCGC
ACCCCGCCCGCTGCCCGGCACAACTGTTCAACAGGCCGCACCCCGCCCGC
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