mRNA_H-elongata_contig61116.13658.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61116.13658.1
Unique NamemRNA_H-elongata_contig61116.13658.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 3.470e-142
Identity = 197/254 (77.56%), Postives = 220/254 (86.61%), Query Frame = 1
Query:    1 KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            K PRIC+S+Q  PK V LDR++KKGD+PA AAAGANHS+L T EG+LFRWGVEDGD++PFP  +CTQIPLPC+EVCCGRKHT+ALMKGG        +VM+WGTGYFGQLGHGDN SYRHPRLLRRLDPQRLGERV+QVACGGYHSAV TDAGRVF+WGFNRYGQCGNGSKDNTVPEP LV+LS V PG VGE PKV+CGRHHSALVT  GALY+WGAC FGKLGLQD  KTVC P+EV FF D+PL+ AAAG+
Sbjct:   25 KEPRICASVQETPKAVPLDRFVKKGDSPAFAAAGANHSILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGG--------FVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGD 270          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC)

HSP 1 Score: 218 bits (555), Expect = 2.160e-64
Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 1
Query:   22 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            S+  LP+ ++L+RY+ + D      A GA  ++ LT  G  ++WG  +G  YP P+ +   +PL C++V CGRKH +ALM+GG        +V +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:  107 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 344          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.570e-64
Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 1
Query:   22 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            S+  LP+ ++L+RY+ + D      A GA  ++ LT  G  ++WG  +G  YP P+ +   +PL C++V CGRKH +ALM+GG        +V +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:   61 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 298          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.180e-55
Identity = 98/198 (49.49%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  172 YPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            YP P+ +   +PL C++V CGRKH +ALM+GG        YV +WG GYFGQLG GDN+S   PRL+  LDP RLG +RV+ VACGG HSAV T    VF +GFNRYGQ G G   N +  P  VN+S +   ++ +   +VCGRHH++++T  G ++SWGA  FG+LGL D  K V  P EV  FR  PL   A G+
Sbjct:   28 YPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------YVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 214          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.470e-48
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  202 IPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGS-KDNTVPEPVLVNLSNVPPGRVGEAPKVV-CGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPL--LTAAAGE 762
            +PL  V++ CGR+H++ALM+GG        +VMTWG GYFGQLGHGDN S  +PRLL +L+PQ+    ++ VA GGYHS  VT AGR F+WGFNRYGQCG G   D  V EP  V L  +     GE  +   CGRHH   V + G +Y+WGA GFG+LG+ D  K    P EV   R + +  +  A GE
Sbjct:    3 VPLAAVQIACGRRHSVALMEGG--------FVMTWGIGYFGQLGHGDNASCTNPRLLHQLEPQQ----IVSVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALREL--RARGEGVRAAACGRHHCVAVGTGGGVYAWGAGGFGRLGVADPPKVAPYPVEVGALRGQRVAEVRVACGE 179          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.820e-46
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 1
Query:  304 WGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNG----SKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            WGTGYFGQLGHGD+ S+  PR++  L+P+RLG +VI VACGG HS V+TD+GRVF WG NR GQCG G     K ++V EP  V+ S++          +V GR+HSA++++ G +++WG  GFG+LGL D  KT   P EV  F   P++T +AG+
Sbjct:    1 WGTGYFGQLGHGDDSSWDSPRMISVLEPKRLGAKVINVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVKSLVLGRNHSAMLSTTGRVFTWGEAGFGRLGLNDVKKTQLIPAEVMAFSKNPVVTLSAGD 157          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2CLQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLQ1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.190e-35
Identity = 76/185 (41.08%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRL-GERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCG-------NGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVT 624
            A G + +V  T +G ++ WG + G++ P P  +     +  V V CGRKHT+ L++G          V+++GTGYFGQLGHG++ S R+PR++  LD + L G+RV  VA G  HS VVT  GR++ WG NR  QCG       +G   +T+  P   +LSNV     G   ++VCGRHH AL+T
Sbjct:   68 ACGGHFTVAATTQGTVYHWGSDGGEMRPKPELMELGTKVCAVTVACGRKHTLILVEGAR--------VLSYGTGYFGQLGHGNDSSLRNPRVIESLDSKALNGDRVTAVAAGFAHSGVVTHTGRLYMWGLNRSCQCGVEPPTGSSGLAASTLFAPHPTDLSNVKDH--GRPVQLVCGRHHPALLT 242          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2A6T9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T9_TRICV)

HSP 1 Score: 123 bits (308), Expect = 6.370e-29
Identity = 77/230 (33.48%), Postives = 113/230 (49.13%), Query Frame = 1
Query:   94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAA 756
            A G+ H+ ++T  G L+ WG ++  +         Q     +E   G++         HT  L   GE        V TWG G FG+LGHG   +   PRL+  L    LG+R  QVACGG+H+AV+T+ GR++++G   +GQ G+G K N V    +  L  +         ++ CG  HS  +TS G +Y+WG    GKLG    GK V TP+ V    D  ++  A+
Sbjct:   41 ACGSRHTAVITSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRIVQLSACGFHTGCLTDAGE--------VYTWGEGKFGRLGHGAERNCHSPRLVEAL----LGKRPRQVACGGFHTAVITEDGRMYTFGGGEHGQLGHGDKVNKVKPTFVQALEGI------FVSQITCGWSHSVALTSKGRVYTWGNGDHGKLG-HGSGKKVSTPQMVEKLSDHKVVRVAS 251          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A182GBT3_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GBT3_AEDAL)

HSP 1 Score: 121 bits (303), Expect = 8.130e-28
Identity = 80/235 (34.04%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   91 AAAGANHSVLLTKEGRLFRWGVEDG-------DIYPF--PAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNV-SYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLV-NLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
            AA G  H++LLTK+G+LF  G  D        D  P   P  I +        V CG  H++AL   G+ FS        WG+   GQLGH  ++ +Y  PR+++ +  +     VIQ+A G +HS  +T++G +FSWG N YGQ G G+    V  P LV +L+ +P         + CG +HS  V+  GA++ WG   FG+LGL D   + C P+++   R+  +   + G+
Sbjct:   63 AACGTTHTLLLTKDGKLFSCGNNDHGQLGHDTDCLPNKRPQFISSLENYIITHVSCGTTHSLALTNWGQVFS--------WGSNSIGQLGHDSDLQTYTTPRMVKTIATKT----VIQIASGQFHSLALTNSGELFSWGANGYGQLGLGTTSEKVVTPTLVKSLAGIP------IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDL-VSRCFPQQLKTLRNLGVRYISCGD 278          
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2PM89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PM89_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.140e-27
Identity = 78/217 (35.94%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREV 717
            A G+ H+ ++T +G L+ WG ++  +         Q     +E   G+K         HT  L   GE F        TWG G FG+LGHG   +   PRL+  L    LG+R  Q+ACGG+HSAVVT+ G+++++G   +GQ G+G K N V +P LV   +   G V +  ++ CG  HS  +T+ G +++WG    GKLG    GK V TP+ V
Sbjct:   93 ACGSRHTAVVTNKGCLYTWGDKENGVAGHGDTDGHQYTPKLLERLSGKKVVQLSACGFHTGCLTDQGECF--------TWGEGKFGRLGHGAERNCHSPRLIETL----LGKRPKQIACGGFHSAVVTEDGKMYTFGGGEHGQLGHGDKVNKV-KPTLVQALD---GIVLQ--QITCGWSHSVALTTNGEVFTWGNGDHGKLG-HGNGKKVSTPQLV 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE1_ECTSI3.470e-14277.56Similar to retinitis pigmentosa GTPase regulator n... [more]
K8Z8W0_NANGC2.160e-6445.38Hect domain and rld 4 (Fragment) n=1 Tax=Nannochlo... [more]
W7U0Q3_9STRA3.570e-6445.38Putative e3 ubiquitin-protein ligase herc4 n=1 Tax... [more]
A0A4D9DAH8_9STRA3.180e-5549.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z434_9STRA1.470e-4848.69Regulator of chromosome condensation 1/beta-lactam... [more]
A0A7S3GVQ9_9STRA5.820e-4649.68Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2CLQ1_9STRA7.190e-3541.08Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2A6T9_TRICV6.370e-2933.48Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A182GBT3_AEDAL8.130e-2834.04Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A7S2PM89_9STRA2.140e-2735.94Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61116contigH-elongata_contig61116:550..2829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.1
Seed ortholog evalue4.5e-119
Seed eggNOG ortholog2880.D8LKE1
KEGG koko:K04575
KEGG Pathwayko05014,map05014
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-16_002650.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61116.13658.1prot_H-elongata_contig61116.13658.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61116 550..2829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930986.1747053-CDS-H-elongata_contig61116:549..6421622930986.1747053-CDS-H-elongata_contig61116:549..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 550..642 -
1691679651.5344334-CDS-H-elongata_contig61116:549..6421691679651.5344334-CDS-H-elongata_contig61116:549..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 550..642 -
1622930986.2021704-CDS-H-elongata_contig61116:1115..11961622930986.2021704-CDS-H-elongata_contig61116:1115..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 1116..1196 -
1691679651.5467792-CDS-H-elongata_contig61116:1115..11961691679651.5467792-CDS-H-elongata_contig61116:1115..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 1116..1196 -
1622930986.224135-CDS-H-elongata_contig61116:1430..17291622930986.224135-CDS-H-elongata_contig61116:1430..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 1431..1729 -
1691679651.5598752-CDS-H-elongata_contig61116:1430..17291691679651.5598752-CDS-H-elongata_contig61116:1430..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 1431..1729 -
1622930986.2427213-CDS-H-elongata_contig61116:2050..22261622930986.2427213-CDS-H-elongata_contig61116:2050..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 2051..2226 -
1691679651.5743244-CDS-H-elongata_contig61116:2050..22261691679651.5743244-CDS-H-elongata_contig61116:2050..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 2051..2226 -
1622930986.2658627-CDS-H-elongata_contig61116:2716..28291622930986.2658627-CDS-H-elongata_contig61116:2716..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 2717..2829 -
1691679651.5818763-CDS-H-elongata_contig61116:2716..28291691679651.5818763-CDS-H-elongata_contig61116:2716..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61116 2717..2829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61116.13658.1

>prot_H-elongata_contig61116.13658.1 ID=prot_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRW
GVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVM
TWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVT
DAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCG
RHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTA
AAGE
back to top

mRNA from alignment at H-elongata_contig61116:550..2829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61116.13658.1 ID=mRNA_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2280bp|location=Sequence derived from alignment at H-elongata_contig61116:550..2829- (Himanthalia elongata Himel1 dioecious)
AAGGGACCCCGAATATGTTCATCGATCCAGCCGCTGCCCAAGGTGGTGTC GTTAGATCGGTACCTTAAGAAAGGAGACGCTCCTGCCTTGGCGGCGGCTG GAGCCAACCACAGGTAGCTATTATTCCGATATTAAATACTCTGCAGCTAC TGTATAGTAAAGTAGTATTAATAGTTACAAGATTACTATTATAGATTCTG ACCCGCACACTGTACGCCAAGCAGCGTATGCAGCATTCTTCCGGTGAGGT TGGGAGGTGATTCTGAAACGCCCAGGGCCCTGAAGAGCAGCACCACAAGC AGTAGCAGGGTGGAGTTAGATCCAACGGTTACCAGCTGTGGGTAGCGAAC ACATACCACGTGCAACGGTTGCCGCGTCGCGTCGTCTCCACCGCTCCCGC TCAGCTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTTCCCCCCG GGCGCGGCTCTTCTGCGCGCCCCCGCGCCCCCGTTCGCCCGCCCCCCCGC CCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCACCCCTTCCA CACTTCTTTTCCCCGGGGGCGGACTTTCTCGGGGCTCCCTCTTCTCCTGT CAGCGTTCTCTTGACCAAGGAAGGCAGGCTCTTCCGGTGGGGCGTGGAGG ACGGAGATATCTATCCCTTTCCGGCGGCCATATGCACACAGATACCGCTG CCGTGCGTCGAGGTGTGCTGCGGGCGCAAGCATACGATGGCGCTTATGAA GGGAGGCGAGTGGTTTTCTAGGACCGGAAGTCCCACCCTCCACCCCCTCT ATGCCGCGACATGCGATGCTTTCATTAACCGTGCTGTGCTATGCTATGCT ATGCTGTACTGTGCTGTGTTATGTTTTTTTGTTTGTTTTGTCTATGAATG ACCGTGACATAATTCCGCTTTATGCCCTATCCTACCTCTTTACTGTCTCT TCTTCCCTTTTTTCTTCTTCTGGTTTTCTGTGTGATAATCTCCATCCACC CACCCAATCTACCACGCTCTTTACGCCCGGGGCATACGGGGACGGCGACC CCCAATGGCGTGACCACCCTCATCATTCCTCTCTCTTTTGTCACCGCCAG GCTACGTGATGACGTGGGGCACGGGATACTTCGGACAGCTGGGCCACGGC GACAACGTGTCCTACCGACACCCGAGGCTTCTGCGGAGGCTCGACCCGCA GCGCCTCGGGGAGCGCGTCATCCAGGTGGCGTGCGGGGGCTACCACTCCG CCGTGGTAACCGACGCGGGAAGGGTCTTCTCGTGGGGCTTTAACCGCTAC GGTCAGTGCGGTAACGGCAGCAAGGACAACACCGTGCCAGAGCCGGTCCT CGTCAATTTATCGAACGTGCCACCGGGGCGTGTCGGGGAGGCACCCAAGG TGTGTATGTTCTCCTCCGCTCAAGGGAGGAAGGGGGTAAGGGTTTCCAGC GTGGGGGGGAGGAGGTTTCATCATCGCAATTAATTGAGTCGAGAGCGAGA AAGGGCGTAGAAAGGGTCACCCCCCCCTCTCCCGCCCCGCGGGTGGCCGT GTGATTCAGACGCACATGAGCTGGTGCTCAAACTCAACTCGCTCCGCGCC TTTGAATGGATCTCCGTTCCATCGACACCACAGGTGGTGTGTGGGCGACA CCACAGCGCGTTGGTTACGAGCTGGGGGGCGCTGTACTCGTGGGGGGCCT GCGGATTCGGCAAGGTGAGCCAATGGTGGCTAACACAGAGCGAGTTTATG GTCCCGCGCGGATGGAGGCAAGGAAGGGGGCTACCGCACATACGACTTCG CCACAGCCTAAAGCAGCACTTTGTTTACTCACCTTTTTGTTTGTTTGTAA AGTGTGGCGATAACTCACTTTGTAAATAACCTGTGAGAAATAATATAGCA ATAATTAATTGCCTGTGGGTGGCGTGCATTGCTTTAAGAAGGCACCGTTC GGTAGATCGAGTGCTGACGTCGTAACATGCATTCGACCGGCGCCCCGCGA TTGGCAAGAGTACCGATCCCCCCGCCTATCATTGAATTACTCTTTCATAT TAGATTTGAAGTATTCGCGTGAGTGTCACGTGTTACGGCGCGTGGTTTTT CTTCTTTTTGTTGTTGTTGTTGTTGTTGGCTTCGTCTCTCATGCTTGGTG ATGTCCGTGCCTCGTGCCTTGTGGTGGTGTTGCACAGCTGGGATTGCAGG ACCAAGGCAAGACTGTGTGCACACCCCGCGAGGTTAACTTCTTCAGGGAT AGACCGCTCTTGACGGCGGCAGCTGGTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61116:550..2829-

>mRNA_H-elongata_contig61116.13658.1 ID=mRNA_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig61116:550..2829- (Himanthalia elongata Himel1 dioecious)
AAGGGACCCCGAATATGTTCATCGATCCAGCCGCTGCCCAAGGTGGTGTC
GTTAGATCGGTACCTTAAGAAAGGAGACGCTCCTGCCTTGGCGGCGGCTG
GAGCCAACCACAGAAGGGACCCCGAATATGTTCATCGATCCAGCCGCTGC
CCAAGGTGGTGTCGTTAGATCGGTACCTTAAGAAAGGAGACGCTCCTGCC
TTGGCGGCGGCTGGAGCCAACCACAGCGTTCTCTTGACCAAGGAAGGCAG
GCTCTTCCGGTGGGGCGTGGAGGACGGAGATATCTATCCCTTTCCGGCGG
CCATATGCACACAGATACCGCTGCCGTGCGTCGAGGTGTGCTGCGGGCGC
AAGCATACGATGGCGCTTATGAAGGGAGGCGAGTGGTTTTCTAGGACCGG
AACGTTCTCTTGACCAAGGAAGGCAGGCTCTTCCGGTGGGGCGTGGAGGA
CGGAGATATCTATCCCTTTCCGGCGGCCATATGCACACAGATACCGCTGC
CGTGCGTCGAGGTGTGCTGCGGGCGCAAGCATACGATGGCGCTTATGAAG
GGAGGCGAGTGGTTTTCTAGGACCGGAAGCTACGTGATGACGTGGGGCAC
GGGATACTTCGGACAGCTGGGCCACGGCGACAACGTGTCCTACCGACACC
CGAGGCTTCTGCGGAGGCTCGACCCGCAGCGCCTCGGGGAGCGCGTCATC
CAGGTGGCGTGCGGGGGCTACCACTCCGCCGTGGTAACCGACGCGGGAAG
GGTCTTCTCGTGGGGCTTTAACCGCTACGGTCAGTGCGGTAACGGCAGCA
AGGACAACACCGTGCCAGAGCCGGTCCTCGTCAATTTATCGAACGTGCCA
CCGGGGCGTGTCGGGGAGGCACCCAAGGCTACGTGATGACGTGGGGCACG
GGATACTTCGGACAGCTGGGCCACGGCGACAACGTGTCCTACCGACACCC
GAGGCTTCTGCGGAGGCTCGACCCGCAGCGCCTCGGGGAGCGCGTCATCC
AGGTGGCGTGCGGGGGCTACCACTCCGCCGTGGTAACCGACGCGGGAAGG
GTCTTCTCGTGGGGCTTTAACCGCTACGGTCAGTGCGGTAACGGCAGCAA
GGACAACACCGTGCCAGAGCCGGTCCTCGTCAATTTATCGAACGTGCCAC
CGGGGCGTGTCGGGGAGGCACCCAAGGTGGTGTGTGGGCGACACCACAGC
GCGTTGGTTACGAGCTGGGGGGCGCTGTACTCGTGGGGGGCCTGCGGATT
CGGCAAGGTGGTGTGTGGGCGACACCACAGCGCGTTGGTTACGAGCTGGG
GGGCGCTGTACTCGTGGGGGGCCTGCGGATTCGGCAAGCTGGGATTGCAG
GACCAAGGCAAGACTGTGTGCACACCCCGCGAGGTTAACTTCTTCAGGGA
TAGACCGCTCTTGACGGCGGCAGCTGGTGAGCTGGGATTGCAGGACCAAG
GCAAGACTGTGTGCACACCCCGCGAGGTTAACTTCTTCAGGGATAGACCG
CTCTTGACGGCGGCAGCTGGTGAG
back to top