mRNA_H-elongata_contig61116.13658.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 3.470e-142 Identity = 197/254 (77.56%), Postives = 220/254 (86.61%), Query Frame = 1
Query: 1 KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
K PRIC+S+Q PK V LDR++KKGD+PA AAAGANHS+L T EG+LFRWGVEDGD++PFP +CTQIPLPC+EVCCGRKHT+ALMKGG +VM+WGTGYFGQLGHGDN SYRHPRLLRRLDPQRLGERV+QVACGGYHSAV TDAGRVF+WGFNRYGQCGNGSKDNTVPEP LV+LS V PG VGE PKV+CGRHHSALVT GALY+WGAC FGKLGLQD KTVC P+EV FF D+PL+ AAAG+
Sbjct: 25 KEPRICASVQETPKAVPLDRFVKKGDSPAFAAAGANHSILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGG--------FVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGD 270
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC) HSP 1 Score: 218 bits (555), Expect = 2.160e-64 Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 22 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
S+ LP+ ++L+RY+ + D A GA ++ LT G ++WG +G YP P+ + +PL C++V CGRKH +ALM+GG +V +WG GYFGQLG GDN+S PRL+ LDP RLG +RV+ VACGG HSAV T VF +GFNRYGQ G G N + P VN+S + ++ + +VCGRHH++++T G ++SWGA FG+LGL D K V P EV FR PL A G+
Sbjct: 107 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 344
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA) HSP 1 Score: 218 bits (555), Expect = 3.570e-64 Identity = 113/249 (45.38%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 22 SIQPLPKVVSLDRYLKKGDAPAL-AAAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
S+ LP+ ++L+RY+ + D A GA ++ LT G ++WG +G YP P+ + +PL C++V CGRKH +ALM+GG +V +WG GYFGQLG GDN+S PRL+ LDP RLG +RV+ VACGG HSAV T VF +GFNRYGQ G G N + P VN+S + ++ + +VCGRHH++++T G ++SWGA FG+LGL D K V P EV FR PL A G+
Sbjct: 61 SVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------FVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 298
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA) HSP 1 Score: 193 bits (491), Expect = 3.180e-55 Identity = 98/198 (49.49%), Postives = 126/198 (63.64%), Query Frame = 1
Query: 172 YPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLG-ERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
YP P+ + +PL C++V CGRKH +ALM+GG YV +WG GYFGQLG GDN+S PRL+ LDP RLG +RV+ VACGG HSAV T VF +GFNRYGQ G G N + P VN+S + ++ + +VCGRHH++++T G ++SWGA FG+LGL D K V P EV FR PL A G+
Sbjct: 28 YPEPSRVSLGVPLRCLQVSCGRKHALALMEGG--------YVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQ---LVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGD 214
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.470e-48 Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 1
Query: 202 IPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGS-KDNTVPEPVLVNLSNVPPGRVGEAPKVV-CGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPL--LTAAAGE 762
+PL V++ CGR+H++ALM+GG +VMTWG GYFGQLGHGDN S +PRLL +L+PQ+ ++ VA GGYHS VT AGR F+WGFNRYGQCG G D V EP V L + GE + CGRHH V + G +Y+WGA GFG+LG+ D K P EV R + + + A GE
Sbjct: 3 VPLAAVQIACGRRHSVALMEGG--------FVMTWGIGYFGQLGHGDNASCTNPRLLHQLEPQQ----IVSVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALREL--RARGEGVRAAACGRHHCVAVGTGGGVYAWGAGGFGRLGVADPPKVAPYPVEVGALRGQRVAEVRVACGE 179
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.820e-46 Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 1
Query: 304 WGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNG----SKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
WGTGYFGQLGHGD+ S+ PR++ L+P+RLG +VI VACGG HS V+TD+GRVF WG NR GQCG G K ++V EP V+ S++ +V GR+HSA++++ G +++WG GFG+LGL D KT P EV F P++T +AG+
Sbjct: 1 WGTGYFGQLGHGDDSSWDSPRMISVLEPKRLGAKVINVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVKSLVLGRNHSAMLSTTGRVFTWGEAGFGRLGLNDVKKTQLIPAEVMAFSKNPVVTLSAGD 157
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2CLQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLQ1_9STRA) HSP 1 Score: 134 bits (337), Expect = 7.190e-35 Identity = 76/185 (41.08%), Postives = 108/185 (58.38%), Query Frame = 1
Query: 94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRL-GERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCG-------NGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVT 624
A G + +V T +G ++ WG + G++ P P + + V V CGRKHT+ L++G V+++GTGYFGQLGHG++ S R+PR++ LD + L G+RV VA G HS VVT GR++ WG NR QCG +G +T+ P +LSNV G ++VCGRHH AL+T
Sbjct: 68 ACGGHFTVAATTQGTVYHWGSDGGEMRPKPELMELGTKVCAVTVACGRKHTLILVEGAR--------VLSYGTGYFGQLGHGNDSSLRNPRVIESLDSKALNGDRVTAVAAGFAHSGVVTHTGRLYMWGLNRSCQCGVEPPTGSSGLAASTLFAPHPTDLSNVKDH--GRPVQLVCGRHHPALLT 242
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2A6T9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T9_TRICV) HSP 1 Score: 123 bits (308), Expect = 6.370e-29 Identity = 77/230 (33.48%), Postives = 113/230 (49.13%), Query Frame = 1
Query: 94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAA 756
A G+ H+ ++T G L+ WG ++ + Q +E G++ HT L GE V TWG G FG+LGHG + PRL+ L LG+R QVACGG+H+AV+T+ GR++++G +GQ G+G K N V + L + ++ CG HS +TS G +Y+WG GKLG GK V TP+ V D ++ A+
Sbjct: 41 ACGSRHTAVITSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRIVQLSACGFHTGCLTDAGE--------VYTWGEGKFGRLGHGAERNCHSPRLVEAL----LGKRPRQVACGGFHTAVITEDGRMYTFGGGEHGQLGHGDKVNKVKPTFVQALEGI------FVSQITCGWSHSVALTSKGRVYTWGNGDHGKLG-HGSGKKVSTPQMVEKLSDHKVVRVAS 251
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A182GBT3_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GBT3_AEDAL) HSP 1 Score: 121 bits (303), Expect = 8.130e-28 Identity = 80/235 (34.04%), Postives = 121/235 (51.49%), Query Frame = 1
Query: 91 AAAGANHSVLLTKEGRLFRWGVEDG-------DIYPF--PAAICTQIPLPCVEVCCGRKHTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNV-SYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLV-NLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREVNFFRDRPLLTAAAGE 762
AA G H++LLTK+G+LF G D D P P I + V CG H++AL G+ FS WG+ GQLGH ++ +Y PR+++ + + VIQ+A G +HS +T++G +FSWG N YGQ G G+ V P LV +L+ +P + CG +HS V+ GA++ WG FG+LGL D + C P+++ R+ + + G+
Sbjct: 63 AACGTTHTLLLTKDGKLFSCGNNDHGQLGHDTDCLPNKRPQFISSLENYIITHVSCGTTHSLALTNWGQVFS--------WGSNSIGQLGHDSDLQTYTTPRMVKTIATKT----VIQIASGQFHSLALTNSGELFSWGANGYGQLGLGTTSEKVVTPTLVKSLAGIP------IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDL-VSRCFPQQLKTLRNLGVRYISCGD 278
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Match: A0A7S2PM89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PM89_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.140e-27 Identity = 78/217 (35.94%), Postives = 114/217 (52.53%), Query Frame = 1
Query: 94 AAGANHSVLLTKEGRLFRWGVEDGDIYPFPAAICTQIPLPCVEVCCGRK---------HTMALMKGGEWFSRTGSYVMTWGTGYFGQLGHGDNVSYRHPRLLRRLDPQRLGERVIQVACGGYHSAVVTDAGRVFSWGFNRYGQCGNGSKDNTVPEPVLVNLSNVPPGRVGEAPKVVCGRHHSALVTSWGALYSWGACGFGKLGLQDQGKTVCTPREV 717
A G+ H+ ++T +G L+ WG ++ + Q +E G+K HT L GE F TWG G FG+LGHG + PRL+ L LG+R Q+ACGG+HSAVVT+ G+++++G +GQ G+G K N V +P LV + G V + ++ CG HS +T+ G +++WG GKLG GK V TP+ V
Sbjct: 93 ACGSRHTAVVTNKGCLYTWGDKENGVAGHGDTDGHQYTPKLLERLSGKKVVQLSACGFHTGCLTDQGECF--------TWGEGKFGRLGHGAERNCHSPRLIETL----LGKRPKQIACGGFHSAVVTEDGKMYTFGGGEHGQLGHGDKVNKV-KPTLVQALD---GIVLQ--QITCGWSHSVALTTNGEVFTWGNGDHGKLG-HGNGKKVSTPQLV 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61116.13658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61116.13658.1 >prot_H-elongata_contig61116.13658.1 ID=prot_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp KGPRICSSIQPLPKVVSLDRYLKKGDAPALAAAGANHSVLLTKEGRLFRWback to top mRNA from alignment at H-elongata_contig61116:550..2829- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61116.13658.1 ID=mRNA_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2280bp|location=Sequence derived from alignment at H-elongata_contig61116:550..2829- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61116:550..2829- >mRNA_H-elongata_contig61116.13658.1 ID=mRNA_H-elongata_contig61116.13658.1|Name=mRNA_H-elongata_contig61116.13658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig61116:550..2829- (Himanthalia elongata Himel1 dioecious)back to top |